CsaV3_4G032380 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G032380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DNA/RNA polymerases superfamily protein
Location	chr4: 22892642 .. 22893978 (+)
RNA-Seq Expression	CsaV3_4G032380
Synteny	CsaV3_4G032380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAGTGTTTTAGAGTAATGAGATGTCTTGAGGACAGAAAAGTGGAACTTGAATTTTTTTCTCTTCAAAATAGGTCTGAAGATTGGTGGTGCATGATAGAAAGTAGACGGAAATCTATAGGTGATATAAGTTTGGATGAGTTTAAAAAGACATTCTTTGATAAGTTTTATCCACGCTCTTTTCGTGATGAAAAACAAAGTGAGTTCTTGAAGCTTAATGATTGTTGCTGAATATGAGAAGAAATATACAAAATTATCTAAGTACGCCACTAGTGTGATTGAGGATGAGATTGAAAGGTGCAAGCAATTTGAAGAGGGATTACGAGAGGAAATTCGTACTCTTGTGACAGCTTGTGCAGATTGGGTTGATTTCTCAAAGTCAATGGAGGCAGCACTAAGAGTAGAGAAAAGTGTATATGAAAGAAAGCGTGAAAGAGAAGCTTCCAAGAATGTGTGTACAGTGTACATCAAACAGTCATCGAAACTGCTCAGGTAATGAAAAAAGTGGAAGATTTGTACTGGGGGTGCCCAGTAGAGGAAATTTTAAGTCTCAGTACAGTGGTTCATCTTTTTCTAAGTCTGGATCAGGTGGAGGGACTCAGAGACCGAGCTGTTCTAGTCATCCTATATATCCTACAAGAGCTTCTCATGTTGTTCAATCTGATAAGGTAGTGTCAAGGTCTAGCAAGAGGAGTGTATGTTATAACTATGGTCAACCAGGTCATTATCGTAGAGACTATCTACTTTTGATACCGGAGAACAATACCATTCAGAAAACTACTTCTCAGACAGGAAGTCAACAACCAAAAACCACAAGAACAAGGGGTGAAGGCTCTAGTGGGGTAAAACAAAAAGGATTGGTGGGATCTCGTCAGGAATGGAAGGTTTTTGCAATGACACAATAGGAGGCAGCAAATGCACCAAACATTGTGACTGGTACGTTATCTATATTTTATAAACCTGCACATGTCTTGATGGATCTTGACGCAACACATTCTTTTGTTTCTATTATGTTTAGTGTTGGATTTGATAAAGAGCTAGAAAGTCTAACTAAGGAATTGTTGATAAGTACACCTGTAGGTGATAGTTTCATAGTCAATAGTGTGTACCGAGATTGCATGGTTCATATTGTTGGTAAAACATTAGTAGTGGATTTGATTCCCTTAGATGTTAAGGAGTTTGATGTTATCTTGGGAATGAATTTTCTATCTAGTCACTATGCCTCTATAATTTTTCATTAGAAAGAAGTTATTTTTAAACGTCCAAGAAAGAACAAGATTATTTTCTGCGGTGATAGAAAAATACTTTTCACCTGTGTGATCTATGCCTTAAAAGCC

mRNA sequence

ATGAAAGAAAGCGTGAAAGAGAAGCTTCCAAGAATGTGTGTACAGTGTACATCAAACAGTCATCGAAACTGCTCAGGTAATGAAAAAAGTGGAAGATTTGTACTGGGGGTGCCCAGTAGAGGAAATTTTAAGTCTCAGTACAGTGGTTCATCTTTTTCTAAGTCTGGATCAGGTGGAGGGACTCAGAGACCGAGCTGTTCTAGTCATCCTATATATCCTACAAGAGCTTCTCATGTTGTTCAATCTGATAAGGTAGTGTCAAGGTCTAGCAAGAGGAGTGTATGTTATAACTATGGTCAACCAGGTCATTATCGTAGAGACTATCTACTTTTGATACCGGAGAACAATACCATTCAGAAAACTACTTCTCAGACAGGAAGTCAACAACCAAAAACCACAAGAACAAGGGGTGAAGGCTCTAGTGGGGTAAAACAAAAAGGATTGGTGGGATCTCGTCAGGAATGGAAGGTTTTTGCAATGACACAATAG

Coding sequence (CDS)

ATGAAAGAAAGCGTGAAAGAGAAGCTTCCAAGAATGTGTGTACAGTGTACATCAAACAGTCATCGAAACTGCTCAGGTAATGAAAAAAGTGGAAGATTTGTACTGGGGGTGCCCAGTAGAGGAAATTTTAAGTCTCAGTACAGTGGTTCATCTTTTTCTAAGTCTGGATCAGGTGGAGGGACTCAGAGACCGAGCTGTTCTAGTCATCCTATATATCCTACAAGAGCTTCTCATGTTGTTCAATCTGATAAGGTAGTGTCAAGGTCTAGCAAGAGGAGTGTATGTTATAACTATGGTCAACCAGGTCATTATCGTAGAGACTATCTACTTTTGATACCGGAGAACAATACCATTCAGAAAACTACTTCTCAGACAGGAAGTCAACAACCAAAAACCACAAGAACAAGGGGTGAAGGCTCTAGTGGGGTAAAACAAAAAGGATTGGTGGGATCTCGTCAGGAATGGAAGGTTTTTGCAATGACACAATAG

Protein sequence

MKESVKEKLPRMCVQCTSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFAMTQ*

Homology

[Close]

BLAST of CsaV3_4G032380 vs. NCBI nr
Match: KAE8649800.1 (hypothetical protein Csa_012219 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 4.5e-85
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MKESVKEKLPRMCVQCTSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGG 60
           MKESVKEKLPRMCVQCTSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGG
Sbjct: 1   MKESVKEKLPRMCVQCTSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGG 60

Query: 61  TQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQK 120
           TQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQK
Sbjct: 61  TQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQK 120

Query: 121 TTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFAMTQ 163
           TTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFAMTQ
Sbjct: 121 TTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFAMTQ 162

[Close]

BLAST of CsaV3_4G032380 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 1.0e-44
Identity = 107/147 (72.79%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 17  TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
           +S+ HRN  G E+SGRFV GV SRGNFKSQY+GSSFSKSGS GG QR S SSHPI  T  
Sbjct: 244 SSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFSKSGSSGGAQRSSGSSHPISSTGG 303

Query: 77  SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
           SH+ +SD+VVS SSK SVCYN GQPGHYRRD   LIP  NTI KTTSQT SQQP+ T T 
Sbjct: 304 SHIARSDRVVSESSKSSVCYNCGQPGHYRRDCPHLIPGGNTILKTTSQTVSQQPRITITS 363

Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 163
           GEGSSG KQKG VG SRQE KVFAMTQ
Sbjct: 364 GEGSSGGKQKGPVGRSRQEGKVFAMTQ 390

[Close]

BLAST of CsaV3_4G032380 vs. NCBI nr
Match: KAA0042144.1 (putative polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 4.7e-42
Identity = 103/145 (71.03%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 17  TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
           +S  H+N  G E+SGRFVLGV SRGNFKSQYSGSSFSKSGSGG  QR S SSHPI     
Sbjct: 210 SSLMHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGG 269

Query: 77  SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
           SH+ +SD+VVS S K SVCYN GQP HYRR+   LIP  NTI KTTSQT SQQP+TTRT 
Sbjct: 270 SHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTILKTTSQTVSQQPRTTRTS 329

Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAM 161
           GEGSSG KQKG  G SRQE KVFAM
Sbjct: 330 GEGSSGGKQKGPAGRSRQEGKVFAM 354

[Close]

BLAST of CsaV3_4G032380 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 4.9e-39
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 17  TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
           +S+ HRN  G E+SGRFV  V SRG+FKSQYSGSSFSKS SGGG QR S SSH I  T  
Sbjct: 222 SSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTISSTGG 281

Query: 77  SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
           SHV +S++VVS S K SVCYN  Q GHYRRD   LIP +NTI KTTSQT  QQ +TT T 
Sbjct: 282 SHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRTTGTS 341

Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 163
           GEGSSG KQKGLVG SRQE KVFAMTQ
Sbjct: 342 GEGSSGGKQKGLVGRSRQEGKVFAMTQ 368

[Close]

BLAST of CsaV3_4G032380 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 4.9e-39
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 17  TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
           +S+ HRN  G E+SGRFV  V SRG+FKSQYSGSSFSKS SGGG QR S SSH I  T  
Sbjct: 256 SSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTISSTGG 315

Query: 77  SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
           SHV +S++VVS S K SVCYN  Q GHYRRD   LIP +NTI KTTSQT  QQ +TT T 
Sbjct: 316 SHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRTTGTS 375

Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 163
           GEGSSG KQKGLVG SRQE KVFAMTQ
Sbjct: 376 GEGSSGGKQKGLVGRSRQEGKVFAMTQ 402

[Close]

BLAST of CsaV3_4G032380 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.9e-45
Identity = 107/147 (72.79%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 17  TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
           +S+ HRN  G E+SGRFV GV SRGNFKSQY+GSSFSKSGS GG QR S SSHPI  T  
Sbjct: 244 SSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFSKSGSSGGAQRSSGSSHPISSTGG 303

Query: 77  SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
           SH+ +SD+VVS SSK SVCYN GQPGHYRRD   LIP  NTI KTTSQT SQQP+ T T 
Sbjct: 304 SHIARSDRVVSESSKSSVCYNCGQPGHYRRDCPHLIPGGNTILKTTSQTVSQQPRITITS 363

Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 163
           GEGSSG KQKG VG SRQE KVFAMTQ
Sbjct: 364 GEGSSGGKQKGPVGRSRQEGKVFAMTQ 390

[Close]

BLAST of CsaV3_4G032380 vs. ExPASy TrEMBL
Match: A0A5A7TFE2 (Putative polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006330 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.3e-42
Identity = 103/145 (71.03%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 17  TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
           +S  H+N  G E+SGRFVLGV SRGNFKSQYSGSSFSKSGSGG  QR S SSHPI     
Sbjct: 210 SSLMHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGG 269

Query: 77  SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
           SH+ +SD+VVS S K SVCYN GQP HYRR+   LIP  NTI KTTSQT SQQP+TTRT 
Sbjct: 270 SHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTILKTTSQTVSQQPRTTRTS 329

Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAM 161
           GEGSSG KQKG  G SRQE KVFAM
Sbjct: 330 GEGSSGGKQKGPAGRSRQEGKVFAM 354

[Close]

BLAST of CsaV3_4G032380 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.4e-39
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 17  TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
           +S+ HRN  G E+SGRFV  V SRG+FKSQYSGSSFSKS SGGG QR S SSH I  T  
Sbjct: 256 SSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTISSTGG 315

Query: 77  SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
           SHV +S++VVS S K SVCYN  Q GHYRRD   LIP +NTI KTTSQT  QQ +TT T 
Sbjct: 316 SHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRTTGTS 375

Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 163
           GEGSSG KQKGLVG SRQE KVFAMTQ
Sbjct: 376 GEGSSGGKQKGLVGRSRQEGKVFAMTQ 402

[Close]

BLAST of CsaV3_4G032380 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.4e-39
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 17  TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
           +S+ HRN  G E+SGRFV  V SRG+FKSQYSGSSFSKS SGGG QR S SSH I  T  
Sbjct: 222 SSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTISSTGG 281

Query: 77  SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
           SHV +S++VVS S K SVCYN  Q GHYRRD   LIP +NTI KTTSQT  QQ +TT T 
Sbjct: 282 SHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRTTGTS 341

Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 163
           GEGSSG KQKGLVG SRQE KVFAMTQ
Sbjct: 342 GEGSSGGKQKGLVGRSRQEGKVFAMTQ 368

[Close]

BLAST of CsaV3_4G032380 vs. ExPASy TrEMBL
Match: A0A5A7TG44 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006940 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.2e-37
Identity = 94/147 (63.95%), Postives = 106/147 (72.11%), Query Frame = 0


Query: 17  TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
           +S+ HRN  G  +SG FV GV ++GNFKSQ+SGSSFSKS SGGG  R S SSHP++    
Sbjct: 83  SSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSGSSFSKSRSGGGVHRSSGSSHPMFSAGG 142

Query: 77  SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
           SHV +SD+ +  S K SVCYN GQPGHYRRD   LI E NT+ KT SQT SQQ KTTRT 
Sbjct: 143 SHVARSDRAILESGKSSVCYNCGQPGHYRRDCPQLILEGNTMHKTISQTISQQLKTTRTS 202

Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 163
           GEGSSG KQKG VG S QE KV AM Q
Sbjct: 203 GEGSSGGKQKGPVGCSHQEGKVLAMKQ 229

The following BLAST results are available for this feature:

BLAST of CsaV3_4G032380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649800.1	4.5e-85	100.00	hypothetical protein Csa_012219 [Cucumis sativus]	[more]
KAA0060484.1	1.0e-44	72.79	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
KAA0042144.1	4.7e-42	71.03	putative polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0036813.1	4.9e-39	69.39	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYJ95881.1	4.9e-39	69.39	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_4G032380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G032380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZM6	4.9e-45	72.79	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TFE2	2.3e-42	71.03	Putative polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BB91	2.4e-39	69.39	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1M0	2.4e-39	69.39	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5A7TG44	2.2e-37	63.95	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CsaV3_4G032380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G032380.1	CsaV3_4G032380.1	mRNA