CsaV3_4G031790 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G031790
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 22344585 .. 22345676 (-)
RNA-Seq ExpressionCsaV3_4G031790
SyntenyCsaV3_4G031790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGCAGACACTTGTTTGGTTGCCAAGAAACAAAGCAGCCAACCCAAAAGAAAAATACACAAAAATTTCAGGTGGGTCAACCGGAAAACAATTGTATTTGGAACCCATTTCCAGTTTCGACGACTTTCCGAGGAATTTGGAAGTTCTCAGGTCAGTCTAGCACCTCAATATTTCTGTACCTAATTTTTCATGTGGGTCTGGAAGAAGGAGATGTTTTCCTGTTTTTTTTTTTTCTCTAACCCCCATTTGATTATGATTTCTAGAAAATGGAACAGCCTAGTATTTTAGAAGGTTGCATCAAATTTGTTCCTTATAACTGCTGATTATTAGTTGTAAATCCTCAATAATATGTTTCTGCTGTTTATTTGATTGATATACAAAGGATCAAGCCTTACCATTCTATGAACCCTATTAAATTTATGTATTTGAGGGAACAGAAACCATGACTTGTGGATGGAATTGGTTGTATCTTAATGTAACCTAACAATCTTTGGATTTTCAATAACTTTGCCACCAACCCTTTTATTTCTCTGTAAACTATTGAACCTGTCAACTAACCCGTATGGATGTATGATTATGAAGATTGTGCTCTGAGATCGAGGTTATGGAATTTGGACCAGGCCATGAGATCCGTTCTAGGACCAATTGGACCAGGATTCACCAATCTTGGGTGCTGTGGGACTCCATGGTTAGATATCATTACTTCCCCTGTGTTCTGAGATGATATTATTTTATTGATTCTTTGATATTTTCCTTGTTTCTGCTGTATCTTATGAACACATGTCAAAATGTTTTGGTAATCAAAAAATAATAAAACAATAATGGTTCTCTTTAGTCATAGCTCACAGTCATTTCAAGTTCTTTACCATATTTCTATGCTTTTACTTTTCTCCTCCTCCTCCTACCTATCTACCCTTTGGTTCTTTTTTTACATAATCATAACTTGGAGTAAACCTTGCCTTTTTCATAAAGGAAAAACCAATGGATTTCTTCTTTTCTCCTATATTTAAAAGAAACTTGTTGTATTCTGTCTCATCTCCAGGAGCCACCTCCTTCTCAGCCTGCTATAACCTGTGAAACTTGTTAG

mRNA sequence

ATGGAGAAGCAGACACTTGTTTGGTTGCCAAGAAACAAAGCAGCCAACCCAAAAGAAAAATACACAAAAATTTCAGGTGGGTCAACCGGAAAACAATTGTATTTGGAACCCATTTCCAGTTTCGACGACTTTCCGAGGAATTTGGAAGTTCTCAGATTGTGCTCTGAGATCGAGGTTATGGAATTTGGACCAGGCCATGAGATCCGTTCTAGGACCAATTGGACCAGGATTCACCAATCTTGGGTGCTGTGGGACTCCATGGAGCCACCTCCTTCTCAGCCTGCTATAACCTGTGAAACTTGTTAG

Coding sequence (CDS)

ATGGAGAAGCAGACACTTGTTTGGTTGCCAAGAAACAAAGCAGCCAACCCAAAAGAAAAATACACAAAAATTTCAGGTGGGTCAACCGGAAAACAATTGTATTTGGAACCCATTTCCAGTTTCGACGACTTTCCGAGGAATTTGGAAGTTCTCAGATTGTGCTCTGAGATCGAGGTTATGGAATTTGGACCAGGCCATGAGATCCGTTCTAGGACCAATTGGACCAGGATTCACCAATCTTGGGTGCTGTGGGACTCCATGGAGCCACCTCCTTCTCAGCCTGCTATAACCTGTGAAACTTGTTAG

Protein sequence

MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVMEFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCETC*
Homology
[Close]
BLAST of CsaV3_4G031790 vs. NCBI nr
Match: KAE8649779.1 (hypothetical protein Csa_012265 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 4.4e-54
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM 60
           MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM
Sbjct: 1   MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM 60

Query: 61  EFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCETC 102
           EFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCETC
Sbjct: 61  EFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCETC 101

[Close]
BLAST of CsaV3_4G031790 vs. NCBI nr
Match: KAG6570707.1 (Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-12
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 56  EIEVMEFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCET 101
           E+EVMEFGPG E RS T WTRIH SWVLW S EPPPS+P+I CET
Sbjct: 32  EVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACET 76

[Close]
BLAST of CsaV3_4G031790 vs. NCBI nr
Match: KAG7010553.1 (hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-12
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 56  EIEVMEFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCET 101
           E+EVMEFGPG E RS T WTRIH SWVLW S EPPPS+P+I CET
Sbjct: 6   EVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACET 50

[Close]
BLAST of CsaV3_4G031790 vs. NCBI nr
Match: KGN47177.2 (hypothetical protein Csa_020828 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 30/49 (61.22%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 38 ISSFDDFPRNLEVLRLCSEIEVMEFGPGHEIRSRTNWTRIHQSWVLWDS 87
          + SFDDF R LEVLR   E+E MEFGPG E  + T  TRI Q WVLW S
Sbjct: 50 LKSFDDFARKLEVLRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVS 98

[Close]
BLAST of CsaV3_4G031790 vs. ExPASy TrEMBL
Match: A0A0A0KZ13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G598020 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.9e-45
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM 60
          MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM
Sbjct: 1  MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM 60

Query: 61 EFGPGHEIRSRTNWTRIHQSWVLWDSME 89
          EFGPGHEIRSRTNWTRIHQSWVLWDSM+
Sbjct: 61 EFGPGHEIRSRTNWTRIHQSWVLWDSMD 88

The following BLAST results are available for this feature:
BLAST of CsaV3_4G031790 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649779.14.4e-54100.00hypothetical protein Csa_012265 [Cucumis sativus][more]
KAG6570707.13.2e-1275.56Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7010553.13.2e-1275.56hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma][more]
KGN47177.22.6e-0661.22hypothetical protein Csa_020828 [Cucumis sativus][more]
BLAST of CsaV3_4G031790 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ136.9e-4598.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G598020 PE=4 SV=1[more]
BLAST of CsaV3_4G031790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G031790.1CsaV3_4G031790.1mRNA