CsaV3_4G031750 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G031750
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 22308025 .. 22309050 (-)
RNA-Seq Expression	CsaV3_4G031750
Synteny	CsaV3_4G031750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGAAAAAAAAAAACGAAGCAAACAAAACAAAACAAAACACACACTCAAAACTCAAAAACTCCCCCGAAAGGACAAACAGAGAAACTCCCGCATGTTCAAACGGAGGGTTTTGGGAGATTTCAGAGGGTAAAATTCGTCGAGAATTAGGTAAAAAACTTTCAGATTTCTTTCGACGTATGCCTTTTAGATTTTCATTTCTTCTTTGTGTTTTCTTTGATCTGTGATTTCTTCCCTGTTTTTTTTTTTTTTTTTGGTTTTGATCTGACAGCATTTCAATGCCTACCCTGTTTCAAAAGTAGGGTTTTCCCTCTCTTCTTCTTTCATTTTTCATTTTTGGCTTTCGTGATCATTTGATTGTTTTCTTTTCTGGGTTTCTGTTTTTCGGTTGCTACTTGCTTCTTTGTTAGGAACAAATTGAGCGTAATTGAAGAAAGTTGAGATGCTTCTTCTTTTCTTTTTTCGTTTGTCAGTCCTAAGTAGCTAAAAGGTTCTCAATTTCGCTTTCTTTTTCTTCTTGTTTGTTGTTGAACTAAAGATACGAGGAAATCCTGGTGTAAAGGTGTTGAAGGATAATTTAATTGCAGAAGTTTTTGGTAAGAGAAATTTTCTAGTTGCGTTTTATCTAAAGGTTTGGCCTTGTTTTCTAAGTTGAAAGCTGGAAAGAGGGATTTAGAAGCTCTTCTTAAATGATTAGACAGAGTCAATTCAACCGAAAAACACTGATTTTCACTTGCATGTTGTGGGGAAGATTTTTCACATTATAGTTCATCTACACTCATTGGAGAATTGATATCATTTCTTCAAACTCGGTTTCTTCTATATTAGTTGTCTTGCATTGGTAGGTAAATAAATCAGCTATACTATTGGTGACTAGTCAATAGTACTTTTAAACTACTCTAATGGCTCTGTTCTCTCCCTCGCTCTGTCTTCTTTGCATCATGGTAATTGTTTATTGTGTTCTTCAGACTTCAAGCTATATAATTCGCACATCAACTACTGGAAGGGTATTTTTGGAGAATGA

mRNA sequence

AAAAAGAAAAAAAAAAACGAAGCAAACAAAACAAAACAAAACACACACTCAAAACTCAAAAACTCCCCCGAAAGGACAAACAGAGAAACTCCCGCATGTTCAAACGGAGGGTTTTGGGAGATTTCAGAGGGTAAAATTCGTCGAGAATTAGACTTCAAGCTATATAATTCGCACATCAACTACTGGAAGGGTATTTTTGGAGAATG

Coding sequence (CDS)

AAAAAGAAAAAAAAAAACGAAGCAAACAAAACAAAACAAAACACACACTCAAAACTCAAAAACTCCCCCGAAAGGACAAACAGAGAAACTCCCGCATGTTCAAACGGAGGGTTTTGGGAGATTTCAGAGGGTAAAATTCGTCGAGAATTAGACTTCAAGCTATATAATTCGCACATCAACTACTGGAAGGGTATTTTTGGAGAATG

Protein sequence

KKKKKNEANKTKQNTHSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHINYWKGIFGEX

Homology

[Close]

BLAST of CsaV3_4G031750 vs. NCBI nr
Match: KGN55393.2 (hypothetical protein Csa_023748, partial [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  KKKKKNEANKTKQNTHSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHIN 60
          KKKKKNEANKTKQNTHSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHIN
Sbjct: 1  KKKKKNEANKTKQNTHSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHIN 60

Query: 61 YWKGIFGE 69
          YWKGIFGE
Sbjct: 61 YWKGIFGE 68

[Close]

BLAST of CsaV3_4G031750 vs. ExPASy TrEMBL
Match: A0A0A0L2T7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G596000 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.2e-28
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  KKKKKNEANKTKQNTHSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHIN 60
          KKKKK + NKTKQNTHSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHIN
Sbjct: 2  KKKKKRKKNKTKQNTHSKLKNSPERTNRETPACSNGGFWEISEGKIRRELDFKLYNSHIN 61

Query: 61 YWKGIFGE 69
          YWKGIFGE
Sbjct: 62 YWKGIFGE 69

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55393.2	2.0e-29	100.00	hypothetical protein Csa_023748, partial [Cucumis sativus]	[more]

BLAST of CsaV3_4G031750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2T7	5.2e-28	95.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G596000 PE=4 SV=1	[more]

BLAST of CsaV3_4G031750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031750.1	CsaV3_4G031750.1	mRNA