CsaV3_4G031550 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G031550
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 22023341 .. 22023633 (+)
RNA-Seq ExpressionCsaV3_4G031550
SyntenyCsaV3_4G031550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCACAGGGCGTTCGGTGGACGGTTGATGAAGCAAGCGGCGGCTTCACGAATCGGGACGATAGAGACGGAATGAAAGGGCTGAGCAACGACGCTCTGGCTTTAGCCCGACGAACGACAGCGTGTACGGCTGCTGGGCTTCGTCGAACGGAAAAGAGAAAGATGGTGGCAGAACATTTCGACTTCGATAGAGACAGCACCGATGACGGCGGACGGCTACTGAAAACGTCGCGTTGTGGCGTGACCGGCCGAAACGGAAGAATGGGAGAATGGAGACAGACGATGACTGG

mRNA sequence

ATGGCGGCACAGGGCGTTCGGTGGACGGTTGATGAAGCAAGCGGCGGCTTCACGAATCGGGACGATAGAGACGGAATGAAAGGGCTGAGCAACGACGCTCTGGCTTTAGCCCGACGAACGACAGCGTGTACGGCTGCTGGGCTTCGTCGAACGGAAAAGAGAAAGATGGTGGCAGAACATTTCGACTTCGATAGAGACAGCACCGATGACGGCGGACGGCTACTGAAAACGTCGCGTTGTGGCGTGACCGGCCGAAACGGAAGAATGGGAGAATGGAGACAGACGATGACTGG

Coding sequence (CDS)

ATGGCGGCACAGGGCGTTCGGTGGACGGTTGATGAAGCAAGCGGCGGCTTCACGAATCGGGACGATAGAGACGGAATGAAAGGGCTGAGCAACGACGCTCTGGCTTTAGCCCGACGAACGACAGCGTGTACGGCTGCTGGGCTTCGTCGAACGGAAAAGAGAAAGATGGTGGCAGAACATTTCGACTTCGATAGAGACAGCACCGATGACGGCGGACGGCTACTGAAAACGTCGCGTTGTGGCGTGACCGGCCGAAACGGAAGAATGGGAGAATGGAGACAGACGATGACTGG

Protein sequence

MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEHFDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMTX
Homology
[Close]
BLAST of CsaV3_4G031550 vs. NCBI nr
Match: KGN54894.1 (hypothetical protein Csa_011981, partial [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 2.9e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60
          MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH
Sbjct: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60

Query: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT 98
          FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT
Sbjct: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT 97

[Close]
BLAST of CsaV3_4G031550 vs. NCBI nr
Match: KGN44006.1 (hypothetical protein Csa_018202 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 26 MKGLSNDALALARRTTACTAAGLRRTEKRKMVAEHFDFDRDSTDDGG 73
          MK LS+DA  LARRT ACTAAGL +TEK+KMVAE F FDRDSTDDGG
Sbjct: 1  MKKLSDDASTLARRTVACTAAGLCQTEKKKMVAERFSFDRDSTDDGG 47

[Close]
BLAST of CsaV3_4G031550 vs. NCBI nr
Match: KGN47280.1 (hypothetical protein Csa_022993 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-06
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 20 RDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVA 59
          R +RD MKGLS+DALALARRT  CTAAGLRR EKRKMVA
Sbjct: 10 RTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVA 48

[Close]
BLAST of CsaV3_4G031550 vs. ExPASy TrEMBL
Match: A0A0A0L1G4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G575360 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60
          MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH
Sbjct: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60

Query: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT 98
          FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT
Sbjct: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMT 97

[Close]
BLAST of CsaV3_4G031550 vs. ExPASy TrEMBL
Match: A0A0A0K8B4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098740 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.3e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 26 MKGLSNDALALARRTTACTAAGLRRTEKRKMVAEHFDFDRDSTDDGG 73
          MK LS+DA  LARRT ACTAAGL +TEK+KMVAE F FDRDSTDDGG
Sbjct: 1  MKKLSDDASTLARRTVACTAAGLCQTEKKKMVAERFSFDRDSTDDGG 47

[Close]
BLAST of CsaV3_4G031550 vs. ExPASy TrEMBL
Match: A0A0A0KC31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G280200 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 20 RDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVA 59
          R +RD MKGLS+DALALARRT  CTAAGLRR EKRKMVA
Sbjct: 10 RTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVA 48

The following BLAST results are available for this feature:
BLAST of CsaV3_4G031550 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54894.12.9e-47100.00hypothetical protein Csa_011981, partial [Cucumis sativus][more]
KGN44006.11.1e-0978.72hypothetical protein Csa_018202 [Cucumis sativus][more]
KGN47280.13.3e-0682.05hypothetical protein Csa_022993 [Cucumis sativus][more]
BLAST of CsaV3_4G031550 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1G41.4e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G575360 PE=4 SV=1[more]
A0A0A0K8B45.3e-1078.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098740 PE=4 SV=1[more]
A0A0A0KC311.6e-0682.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G280200 PE=4 SV=1[more]
BLAST of CsaV3_4G031550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G031550.1CsaV3_4G031550.1mRNA