CsaV3_4G031340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G031340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein MNN4-like
Location	chr4: 21733230 .. 21733846 (+)
RNA-Seq Expression	CsaV3_4G031340
Synteny	CsaV3_4G031340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATGAGATTGGACATGACATCTTAAAGAACCCAAGAGCTCAAGACTTAGAGAGTGCGTTGAAGAAAGTGGTTTGGCCCGAGACAATGTTAGATATCACGCCAACAGGAAAGTATCAGCTCCTCCCACACAATTTGAACACAGAGGCTATAATCTGGCTAGTGTTTGTGAAGAAAAAGATCATGCCTACTCGCCATGACAACAACATCTCCATGGAAAGGGTAATGTTGGTATACTGCATAATGAAGGAGATCCTGGTGAACATTGGCAAATAATAAGCGAGCACATCATTGCATGGGTCAAGCATTATCGTAGAGCAAGACCTTTCTCGCACTTAATTGAATAATTGTGCTAAAGGGCATGCCGACGAGAGAAACTTCCTCAGGTGGAGGTGAAAGATGGAATTTGGTCACTATCAATCCTTCACTGCATCATAGCCATTCACACCAAGAATGTAAAGTCAAAACGCCTCAAAATCAAGGAACGTTGTAAAGAAGTTGAAGAAGTATTGGATGGCATGATGACGTTGAAGAATAAGATGAGAAAGAAATACCCCACTGAAACGCAAAATCAAGACAAGGAGGAAGCTTTAATATCGAAGAAAGGACTCTAA

mRNA sequence

ATGGAAAATGAGATTGGACATGACATCTTAAAGAACCCAAGAGCTCAAGACTTAGAGAGTGCGTTGAAGAAAGTGGTTTGGCCCGAGACAATGTTAGATATCACGCCAACAGGAAAGTATCAGCTCCTCCCACACAATTTGAACACAGAGGCTATAATCTGGCTAGTGTTTGTGAAGAAAAAGATCATGCCTACTCGCCATGACAACAACATCTCCATGGAAAGGGTAATGTTGGTATACTGCATAATGAAGGAGATCCTGGTGGAGGTGAAAGATGGAATTTGGTCACTATCAATCCTTCACTGCATCATAGCCATTCACACCAAGAATGTAAAGTCAAAACGCCTCAAAATCAAGGAACGTTGTAAAGAAGTTGAAGAAGTATTGGATGGCATGATGACGTTGAAGAATAAGATGAGAAAGAAATACCCCACTGAAACGCAAAATCAAGACAAGGAGGAAGCTTTAATATCGAAGAAAGGACTCTAA

Coding sequence (CDS)

ATGGAAAATGAGATTGGACATGACATCTTAAAGAACCCAAGAGCTCAAGACTTAGAGAGTGCGTTGAAGAAAGTGGTTTGGCCCGAGACAATGTTAGATATCACGCCAACAGGAAAGTATCAGCTCCTCCCACACAATTTGAACACAGAGGCTATAATCTGGCTAGTGTTTGTGAAGAAAAAGATCATGCCTACTCGCCATGACAACAACATCTCCATGGAAAGGGTAATGTTGGTATACTGCATAATGAAGGAGATCCTGGTGGAGGTGAAAGATGGAATTTGGTCACTATCAATCCTTCACTGCATCATAGCCATTCACACCAAGAATGTAAAGTCAAAACGCCTCAAAATCAAGGAACGTTGTAAAGAAGTTGAAGAAGTATTGGATGGCATGATGACGTTGAAGAATAAGATGAGAAAGAAATACCCCACTGAAACGCAAAATCAAGACAAGGAGGAAGCTTTAATATCGAAGAAAGGACTCTAA

Protein sequence

MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKERCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL*

Homology

[Close]

BLAST of CsaV3_4G031340 vs. NCBI nr
Match: KGN54872.1 (hypothetical protein Csa_012255 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 2.0e-85
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK 60
           MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK
Sbjct: 1   MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK 60

Query: 61  KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE 120
           KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE
Sbjct: 61  KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE 120

Query: 121 RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL 163
           RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL
Sbjct: 121 RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL 162

[Close]

BLAST of CsaV3_4G031340 vs. NCBI nr
Match: KAA0041933.1 (hypothetical protein E6C27_scaffold67G003500 [Cucumis melo var. makuwa] >TYK17865.1 hypothetical protein E5676_scaffold306G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-26
Identity = 74/161 (45.96%), Postives = 85/161 (52.80%), Query Frame = 0


Query: 3   NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKI 62
           NEIGH I KNP+ +DLE ALK+V W  T  DIT T +Y L  HNLN E  IWLVF KKKI
Sbjct: 37  NEIGHAIFKNPQERDLEYALKRVAWSGTKWDITITRRYHLFLHNLNIEVSIWLVFEKKKI 96

Query: 63  MPTRHDNNISMERVMLVYCIMKEI------------------------------------ 120
           +PTRHD  ISMER+MLVYCIM+EI                                    
Sbjct: 97  IPTRHDIAISMERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKA 156

[Close]

BLAST of CsaV3_4G031340 vs. NCBI nr
Match: KAA0057652.1 (hypothetical protein E6C27_scaffold43054G00260 [Cucumis melo var. makuwa] >TYK19535.1 hypothetical protein E5676_scaffold416G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-25
Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 4   EIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIM 63
           EI H I KNP+ +DLE ALK+V WP T  DI PTGKYQL   NLNTEAIIWLVFVK  I 
Sbjct: 24  EIEHAIFKNPQERDLEDALKRVAWPRTKWDIMPTGKYQLFLQNLNTEAIIWLVFVKNDIR 83

Query: 64  PTRHDNNISMERVMLVYCIMKEILVEV 91
           PTRHD+ ISME +MLVYCIM+ +LV +
Sbjct: 84  PTRHDSTISMEHIMLVYCIMEHLLVNI 110

[Close]

BLAST of CsaV3_4G031340 vs. NCBI nr
Match: KAA0049837.1 (hypothetical protein E6C27_scaffold1591G00330 [Cucumis melo var. makuwa] >TYK08684.1 hypothetical protein E5676_scaffold118G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-22
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 3   NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKI 62
           NEIGH I KN + +DLE  LK++ WPET  DI PT +  L PHNLNTEA IWLVFVKKK+
Sbjct: 54  NEIGHAIFKNLQERDLEDILKRIAWPETRWDILPT-RVSLFPHNLNTEANIWLVFVKKKM 113

Query: 63  MPTRHDNNISMERVMLVYCIMKEILVEVKDGI 95
           MPT HDN IS+ER++LVY IM+ +LV + + I
Sbjct: 114 MPTLHDNTISIERMVLVYDIMEHLLVNIGEKI 144

[Close]

BLAST of CsaV3_4G031340 vs. NCBI nr
Match: KAA0048500.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-21
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 2   ENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKK 61
           +  + + I K P   D+++AL++V WP    DITP  KYQL PHNL T A +WLVF+KK 
Sbjct: 206 QTTVEYPIFKEPSDIDMQNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKN 265

Query: 62  IMPTRHDNNISMERVMLVYCIMKEILVEVKDGIW 96
           +MPTRHDN IS+ER+ML+YCIM+EI + V + I+
Sbjct: 266 LMPTRHDNTISLERIMLLYCIMEEIPLNVDEIIY 299

[Close]

BLAST of CsaV3_4G031340 vs. ExPASy TrEMBL
Match: A0A0A0L2P0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 9.9e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK 60
           MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK
Sbjct: 1   MENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKK 60

Query: 61  KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE 120
           KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE
Sbjct: 61  KIMPTRHDNNISMERVMLVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSKRLKIKE 120

Query: 121 RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL 163
           RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL
Sbjct: 121 RCKEVEEVLDGMMTLKNKMRKKYPTETQNQDKEEALISKKGL 162

[Close]

BLAST of CsaV3_4G031340 vs. ExPASy TrEMBL
Match: A0A5D3D2B5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001360 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 74/161 (45.96%), Postives = 85/161 (52.80%), Query Frame = 0


Query: 3   NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKI 62
           NEIGH I KNP+ +DLE ALK+V W  T  DIT T +Y L  HNLN E  IWLVF KKKI
Sbjct: 37  NEIGHAIFKNPQERDLEYALKRVAWSGTKWDITITRRYHLFLHNLNIEVSIWLVFEKKKI 96

Query: 63  MPTRHDNNISMERVMLVYCIMKEI------------------------------------ 120
           +PTRHD  ISMER+MLVYCIM+EI                                    
Sbjct: 97  IPTRHDIAISMERIMLVYCIMEEIPMNIGEIISEHIIAWVKHLHGARPFSYLIEKFYLKA 156

[Close]

BLAST of CsaV3_4G031340 vs. ExPASy TrEMBL
Match: A0A5D3D7L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00290 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 4   EIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIM 63
           EI H I KNP+ +DLE ALK+V WP T  DI PTGKYQL   NLNTEAIIWLVFVK  I 
Sbjct: 24  EIEHAIFKNPQERDLEDALKRVAWPRTKWDIMPTGKYQLFLQNLNTEAIIWLVFVKNDIR 83

Query: 64  PTRHDNNISMERVMLVYCIMKEILVEV 91
           PTRHD+ ISME +MLVYCIM+ +LV +
Sbjct: 84  PTRHDSTISMEHIMLVYCIMEHLLVNI 110

[Close]

BLAST of CsaV3_4G031340 vs. ExPASy TrEMBL
Match: A0A5A7U670 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118G00350 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.3e-23
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 3   NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKI 62
           NEIGH I KN + +DLE  LK++ WPET  DI PT +  L PHNLNTEA IWLVFVKKK+
Sbjct: 54  NEIGHAIFKNLQERDLEDILKRIAWPETRWDILPT-RVSLFPHNLNTEANIWLVFVKKKM 113

Query: 63  MPTRHDNNISMERVMLVYCIMKEILVEVKDGI 95
           MPT HDN IS+ER++LVY IM+ +LV + + I
Sbjct: 114 MPTLHDNTISIERMVLVYDIMEHLLVNIGEKI 144

[Close]

BLAST of CsaV3_4G031340 vs. ExPASy TrEMBL
Match: A0A5A7TZE0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001090 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.7e-22
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 2   ENEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKK 61
           +  + + I K P   D+++AL++V WP    DITP  KYQL PHNL T A +WLVF+KK 
Sbjct: 206 QTTVEYPIFKEPSDIDMQNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKN 265

Query: 62  IMPTRHDNNISMERVMLVYCIMKEILVEVKDGIW 96
           +MPTRHDN IS+ER+ML+YCIM+EI + V + I+
Sbjct: 266 LMPTRHDNTISLERIMLLYCIMEEIPLNVDEIIY 299

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54872.1	2.0e-85	100.00	hypothetical protein Csa_012255 [Cucumis sativus]	[more]
KAA0041933.1	2.1e-26	45.96	hypothetical protein E6C27_scaffold67G003500 [Cucumis melo var. makuwa] >TYK1786...	[more]
KAA0057652.1	2.4e-25	67.82	hypothetical protein E6C27_scaffold43054G00260 [Cucumis melo var. makuwa] >TYK19...	[more]
KAA0049837.1	1.1e-22	61.96	hypothetical protein E6C27_scaffold1591G00330 [Cucumis melo var. makuwa] >TYK086...	[more]
KAA0048500.1	1.6e-21	53.19	protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucu...	[more]

BLAST of CsaV3_4G031340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2P0	9.9e-86	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1	[more]
A0A5D3D2B5	1.0e-26	45.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D7L3	1.1e-25	67.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U670	5.3e-23	61.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZE0	7.7e-22	53.19	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00...	[more]

BLAST of CsaV3_4G031340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031340.1	CsaV3_4G031340.1	mRNA