CsaV3_4G031240 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G031240
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Exopolygalacturonase-like
Location	chr4: 21512337 .. 21513984 (+)
RNA-Seq Expression	CsaV3_4G031240
Synteny	CsaV3_4G031240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGAAATCTTAGCCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCATTTTCGATGACGTCACCGGCACTAAAAATCTTCTCAAGGGGATCGTACCAACAGCAAATGAGCAGTTCCTTCGTCCTGTAGAAGCACCCCGACGTCTTGGCTTCAGTACTCTTTCCAACAATGGCCGCACAGTGAATGACATTAAGGCAAATGTTGATCTAAATGAGAATGGTGGTTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAGGTGAGAAATATCAACACACCTAACTTCAAACCTTTTAATTTGAGTTAATTATCTTTAAATCGATGACTATAGGAAATTGTATATATTTTTTGCTATTAAATTCTACCGTCATATTATTCGAAACCGATATCAATTTTTCTTGTATTCTATTTGGGTGGAAATGGATGGTACAATTATTTCAACATTTTTTTGGCAAAAAGAGTTACAATTTGTTTTTATTTTCCATTTGGCAGGCATTCATGACAACGTGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCAAAGTTCTTAATCCCACAACGCACATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCGATCACCCTCGAAAATCGAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGTGTCTTTGACGGCCAAGGCCTCTCTGTTTGGCCCTACAACGATTGCAAGAAAAACAACTTATGCCAAATTCTTCCAATCGTAACTATATATTTTTCCTTTCATTCTAAATTACAAGTGTTTTTACACTCTAAACGTTACGATTTGTGTCTAACACGTAGCTAAAATAACCTACAATAGACCAAATATGTTTAAAAATGAAAATTTATTTTAAATTACAAAAACTATGAAGATTATTTAGAAAATATATAGCAAAATTTCATGTATCCTATCGATAAGTATTTGAAATTTTACTTTAAATATTTTTTTATTTATTATGCTATATTCGAAAATGTCTTTTCAACCATAGTGAGTAATTCTTGGTTTTTTTTCTTTTTTTGGCAGTCGATTAAATTCACGAGATTAAATCACACGATTGTTGATGGGCTCACTTCGATAAATAGCATGGGGTTTCACACGTCTGTATTCTACTGCTACAATTTCACTGCTACTAACATGAAAATTATAGCTCCACATAATAGTCCCAACACCGATGGAATGCACCTTAGCACCTCAAAATTGGTCACCATTGCCAACAGTGTCATTGGCACCGGTGATGATTGTGTCTCCATTGGCCACAGTACTGAGAATATCACCGTCACCAACGTCACTTGCGGCCCTGGACATGGCCTTAGGTAAATAGTGCACTTTTTAAAAAAGAAATTAAAGATTAAGTAGACACAAAGGAAAACATCTGAAAGCTAATTTCCATTTTTCATCTTTTTCAGTGTGGGCAGCTTGGGCAAGTACTCGAAAGAAAAGGGTGTCTACGACGTTCTAGTAAAGAACTGCACCATTTTCAATGCCACCAATGGTGCCAGAATCAAGACTTGGGCTAG

mRNA sequence

ATGACAAGAAATCTTAGCCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCATTTTCGATGACGTCACCGGCACTAAAAATCTTCTCAAGGGGATCGTACCAACAGCAAATGAGCAGTTCCTTCGTCCTGTAGAAGCACCCCGACGTCTTGGCTTCAGTACTCTTTCCAACAATGGCCGCACAGTGAATGACATTAAGGCAAATGTTGATCTAAATGAGAATGGTGGTTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAGGCATTCATGACAACGTGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCAAAGTTCTTAATCCCACAACGCACATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCGATCACCCTCGAAAATCGAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGTGTCTTTGACGGCCAAGGCCTCTCTGTTTGGCCCTACAACGATTGCAAGAAAAACAACTTATGCCAAATTCTTCCAATCTGTGGGCAGCTTGGGCAAGTACTCGAAAGAAAAGGGTGTCTACGACGTTCTAGTAAAGAACTGCACCATTTTCAATGCCACCAATGGTGCCAGAATCAAGACTTGGGCTAG

Coding sequence (CDS)

ATGACAAGAAATCTTAGCCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCATTTTCGATGACGTCACCGGCACTAAAAATCTTCTCAAGGGGATCGTACCAACAGCAAATGAGCAGTTCCTTCGTCCTGTAGAAGCACCCCGACGTCTTGGCTTCAGTACTCTTTCCAACAATGGCCGCACAGTGAATGACATTAAGGCAAATGTTGATCTAAATGAGAATGGTGGTTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAGGCATTCATGACAACGTGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCAAAGTTCTTAATCCCACAACGCACATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCGATCACCCTCGAAAATCGAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGTGTCTTTGACGGCCAAGGCCTCTCTGTTTGGCCCTACAACGATTGCAAGAAAAACAACTTATGCCAAATTCTTCCAATCTGTGGGCAGCTTGGGCAAGTACTCGAAAGAAAAGGGTGTCTACGACGTTCTAGTAAAGAACTGCACCATTTTCAATGCCACCAATGGTGCCAGAATCAAGACTTGGGCTAG

Protein sequence

MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTLSNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQILPICGQLGQVLERKGCLRRSSKELHHFQCHQWCQNQDLG*

Homology

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BLAST of CsaV3_4G031240 vs. NCBI nr
Match: KAE8649761.1 (hypothetical protein Csa_012665 [Cucumis sativus])

HSP 1 Score: 508.1 bits (1307), Expect = 4.3e-140
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
           SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPICGQLGQVLERKGCLRRSSKELHHFQCHQWCQNQD 240
           VFDGQGLSVWPYNDCKKNNLCQILPICGQLGQVLERKGCLRRSSKELHHFQCHQWCQNQD
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQILPICGQLGQVLERKGCLRRSSKELHHFQCHQWCQNQD 240

Query: 241 LG 243
           LG
Sbjct: 241 LG 242

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BLAST of CsaV3_4G031240 vs. NCBI nr
Match: KAE8646259.1 (hypothetical protein Csa_016100, partial [Cucumis sativus])

HSP 1 Score: 402.1 bits (1032), Expect = 3.3e-108
Identity = 192/206 (93.20%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAV+FDD+TGT+N LKGIVPT NEQFLRP EAPRRLGFSTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
            N G TVNDIKANVDLN+NGGSVFDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  PNIGGTVNDIKANVDLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQ TFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPI 207
           VFDGQGLSVWPYNDCKKNNLCQ+LPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

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BLAST of CsaV3_4G031240 vs. NCBI nr
Match: KAE8646258.1 (hypothetical protein Csa_015562 [Cucumis sativus])

HSP 1 Score: 402.1 bits (1032), Expect = 3.3e-108
Identity = 192/206 (93.20%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAV+FDD+TGT+N LKGIVPT NEQFLRP EAPRRLGFSTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
            N G TVNDIKANVDLN+NGGSVFDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  PNIGGTVNDIKANVDLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQ TFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPI 207
           VFDGQGLSVWPYNDCKKNNLCQ+LPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

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BLAST of CsaV3_4G031240 vs. NCBI nr
Match: XP_031745094.1 (exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 402.1 bits (1032), Expect = 3.3e-108
Identity = 192/206 (93.20%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAV+FDD+TGT+N LKGIVPT NEQFLRP EAPRRLGFSTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
            N G TVNDIKANVDLN+NGGSVFDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  PNIGGTVNDIKANVDLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQ TFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPI 207
           VFDGQGLSVWPYNDCKKNNLCQ+LPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

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BLAST of CsaV3_4G031240 vs. NCBI nr
Match: XP_031745095.1 (exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 402.1 bits (1032), Expect = 3.3e-108
Identity = 192/206 (93.20%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAV+FDD+TGT+N LKGIVPT NEQFLRP EAPRRLGFSTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
            N G TVNDIKANVDLN+NGGSVFDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  PNIGGTVNDIKANVDLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQ TFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPI 207
           VFDGQGLSVWPYNDCKKNNLCQ+LPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

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BLAST of CsaV3_4G031240 vs. ExPASy Swiss-Prot
Match: P49062 (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.9e-27
Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = 0


Query: 77  NENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAG 136
           N    +V+D+TK GA  DG T+  +AF+ TWI  C + V PA  L+P+ TFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQILPICGQLGQV--LERKGCLRRSSKELHHF 231
           K   C + P   +   +  +E  G    ++K  H F
Sbjct: 165 KKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMF 196

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BLAST of CsaV3_4G031240 vs. ExPASy Swiss-Prot
Match: P35339 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-24
Identity = 60/139 (43.17%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 68  NDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTF 127
           ND KA+       G  FD+TK GA  +GKTD  +A    W +AC  T G    LIP+  F
Sbjct: 30  NDAKAS-----GPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDF 89

Query: 128 LVGPVTFAGPCKSFPITLENRGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQG 187
           LVGP+ F GPCK   +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG
Sbjct: 90  LVGPLNFTGPCKG-DVTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQG 149

Query: 188 LSVWPYNDCKKNNLCQILP 206
            +VW  N C K   C+ILP
Sbjct: 150 PAVWSKNSCVKKYDCKILP 161

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BLAST of CsaV3_4G031240 vs. ExPASy Swiss-Prot
Match: P26216 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.6e-23
Identity = 57/134 (42.54%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 74  VDLNENG-GSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPV 133
           +D   +G G  FD+TK GA  +GKTD  +A    W +AC  T G    LIP+  FLVG +
Sbjct: 30  IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQL 89

Query: 134 TFAGPCKSFPITLENRGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQGLSVWP 193
            F GPCK   +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG +VW 
Sbjct: 90  NFTGPCKG-DVTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWS 149

Query: 194 YNDCKKNNLCQILP 206
            N C K   C+ILP
Sbjct: 150 KNSCTKKYDCKILP 161

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BLAST of CsaV3_4G031240 vs. ExPASy Swiss-Prot
Match: P35338 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.6e-23
Identity = 57/134 (42.54%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 74  VDLNENG-GSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPV 133
           +D   +G G  FD+TK GA  +GKTD  +A    W +AC  T G    LIP+  FLVG +
Sbjct: 30  IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQL 89

Query: 134 TFAGPCKSFPITLENRGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQGLSVWP 193
            F GPCK   +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG +VW 
Sbjct: 90  NFTGPCKG-DVTIQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWS 149

Query: 194 YNDCKKNNLCQILP 206
            N C K   C+ILP
Sbjct: 150 KNSCTKKYDCKILP 161

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BLAST of CsaV3_4G031240 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.6e-20
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 78  ENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGP 137
           ++ GSVF+V  +GAK  G  D +QA M  W AAC +  GP+  LIP+  + +G V   GP
Sbjct: 4   QSSGSVFNVNDYGAKGAG--DISQAVMKAWKAACASQ-GPSTVLIPKGNYNMGEVAMQGP 63

Query: 138 CKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKK 197
           CK   I  +  G VKA  D S + S  W S   I G  ++G+G  DGQG + W  N+C K
Sbjct: 64  CKGSKIGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDK 123

Query: 198 NNLCQ 203
           N  C+
Sbjct: 124 NPNCK 125

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BLAST of CsaV3_4G031240 vs. ExPASy TrEMBL
Match: A0A0A0K588 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G353000 PE=3 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.8e-106
Identity = 188/206 (91.26%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAV+F D+TGT+N LKGIVPT NEQFLRP EAPRRLGF+TL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
           SN G TVNDIKANVDLNENG S+FDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQ TFLVGPVTFAGPCKSFPITLEN GTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPI 207
           VFDGQGLSVW YNDCKKNNLCQ+LPI
Sbjct: 181 VFDGQGLSVWSYNDCKKNNLCQLLPI 206

[Close]

BLAST of CsaV3_4G031240 vs. ExPASy TrEMBL
Match: A0A0A0KAZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398720 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 4.1e-104
Identity = 187/206 (90.78%), Postives = 193/206 (93.69%), Query Frame = 0


Query: 1   MTRNLSLIQILLLVFAWQCCAVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLGFSTL 60
           MTRN SLIQILLLVFA QCCAVIFDDVTGT+NLLKGIVP AN+QFLRP E+PR LGFSTL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  SNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120
            N G  VNDIKANVDLNENGGSVFDVTKHGAK DG+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQ TFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQILPI 207
           VFDGQGLSVWPYNDCKKNNLCQ+LPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

[Close]

BLAST of CsaV3_4G031240 vs. ExPASy TrEMBL
Match: A0A5A7U4W1 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00950 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 3.0e-94
Identity = 176/210 (83.81%), Postives = 187/210 (89.05%), Query Frame = 0


Query: 1   MTRNLSL-IQILLLVFAWQCCAVI---FDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLG 60
           MTRNLSL IQILLLVFA QC A +    DDVTGT+NLLK  VPT NEQFLRP  APRRLG
Sbjct: 1   MTRNLSLVIQILLLVFASQCSAKVAATLDDVTGTENLLKVTVPTVNEQFLRPAGAPRRLG 60

Query: 61  FSTLSNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVG 120
             TL + G TVNDI+AN+ LNENGGSVFDVTKHGAKADG+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  IGTLPDIGSTVNDIRANIVLNENGGSVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFIL 180
           PAKFLIPQ T+LVGPVTFAGPCKSFPITLEN+GTVKATTDIS YSSPEWFSIEDITGFIL
Sbjct: 121 PAKFLIPQGTYLVGPVTFAGPCKSFPITLENQGTVKATTDISEYSSPEWFSIEDITGFIL 180

Query: 181 TGSGVFDGQGLSVWPYNDCKKNNLCQILPI 207
           TGSGVFDGQG++VWPYNDCKKN  CQ+LPI
Sbjct: 181 TGSGVFDGQGVTVWPYNDCKKNRFCQLLPI 210

[Close]

BLAST of CsaV3_4G031240 vs. ExPASy TrEMBL
Match: A0A5A7TQ89 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36913G00010 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 5.0e-94
Identity = 176/210 (83.81%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 1   MTRNLSL-IQILLLVFAWQCC---AVIFDDVTGTKNLLKGIVPTANEQFLRPVEAPRRLG 60
           MTRNLSL IQILLLVFA QC    A   DDVTGT+NLLK  VPT NEQFLRP  APRRLG
Sbjct: 1   MTRNLSLVIQILLLVFASQCSAKDAATLDDVTGTENLLKVTVPTVNEQFLRPAGAPRRLG 60

Query: 61  FSTLSNNGRTVNDIKANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVG 120
             TL + G TVNDI+AN+ LNENGGSVFDVTKHGAKADG+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  IGTLPDIGSTVNDIRANIVLNENGGSVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQRTFLVGPVTFAGPCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFIL 180
           PAKFLIPQ T+LVGPVTFAGPCKSFPITLEN+GTVKATTDIS YSSPEWFSIEDITGFIL
Sbjct: 121 PAKFLIPQGTYLVGPVTFAGPCKSFPITLENQGTVKATTDISEYSSPEWFSIEDITGFIL 180

Query: 181 TGSGVFDGQGLSVWPYNDCKKNNLCQILPI 207
           TGSGVFDGQG++VWPYNDCKKN  CQ+LPI
Sbjct: 181 TGSGVFDGQGVTVWPYNDCKKNRFCQLLPI 210

[Close]

BLAST of CsaV3_4G031240 vs. ExPASy TrEMBL
Match: A0A0A0KMA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222970 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.7e-87
Identity = 157/173 (90.75%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 34  LKGIVPTANEQFLRPVEAPRRLGFSTLSNNGRTVNDIKANVDLNENGGSVFDVTKHGAKA 93
           L GIVPT N+QFLRP EAPR LGF+TL + G TVNDI ANVDLNENGGSVFDVTKHGAKA
Sbjct: 6   LYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA 65

Query: 94  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFPITLENRGTVKA 153
           DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQ TFLVGPVTFAGPCKS+PITLEN+GTVKA
Sbjct: 66  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKA 125

Query: 154 TTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQILPI 207
           TTDISAYSSPEWFS+EDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ+LPI
Sbjct: 126 TTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 178

[Close]

BLAST of CsaV3_4G031240 vs. TAIR 10
Match: AT1G02790.1 (polygalacturonase 4 )

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-28
Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = 0


Query: 77  NENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAG 136
           N    +V+D+TK GA  DG T+  +AF+ TWI  C + V PA  L+P+ TFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSFPITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQILPICGQLGQV--LERKGCLRRSSKELHHF 231
           K   C + P   +   +  +E  G    ++K  H F
Sbjct: 165 KKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMF 196

[Close]

BLAST of CsaV3_4G031240 vs. TAIR 10
Match: AT2G15460.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-24
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFP 142
           VF+V +HGAK DGKTD+A AF + W  AC+   G +K  +P+ TF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLC 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNC 147

[Close]

BLAST of CsaV3_4G031240 vs. TAIR 10
Match: AT2G15450.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-24
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFP 142
           VF+V +HGAK DGKTD+A AF + W  AC+   G +K  +P+ TF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLC 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNC 147

[Close]

BLAST of CsaV3_4G031240 vs. TAIR 10
Match: AT2G26620.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-24
Identity = 52/124 (41.94%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFP 142
           VF+V +HG+K DGKTD+  AF + W  AC+   G +K  +P+ TF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGSKPDGKTDNTNAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ 202
           I     GT+ A  + +      W +   I    ++GSG  DGQG   WP NDC KN  C 
Sbjct: 90  IEFIIDGTLLAPANPNDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKNPNCP 149

Query: 203 ILPI 207
            L I
Sbjct: 150 KLAI 152

[Close]

BLAST of CsaV3_4G031240 vs. TAIR 10
Match: AT2G15470.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-23
Identity = 51/119 (42.86%), Postives = 67/119 (56.30%), Query Frame = 0


Query: 83  VFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFP 142
           VF+V +HGAK DGKTD+A AF + W  AC+   G +K  +P+ TF +G V F G CK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGLCKN-P 89

Query: 143 ITLENRGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLC 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNC 147

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649761.1	4.3e-140	100.00	hypothetical protein Csa_012665 [Cucumis sativus]	[more]
KAE8646259.1	3.3e-108	93.20	hypothetical protein Csa_016100, partial [Cucumis sativus]	[more]
KAE8646258.1	3.3e-108	93.20	hypothetical protein Csa_015562 [Cucumis sativus]	[more]
XP_031745094.1	3.3e-108	93.20	exopolygalacturonase-like [Cucumis sativus]	[more]
XP_031745095.1	3.3e-108	93.20	exopolygalacturonase-like [Cucumis sativus]	[more]

BLAST of CsaV3_4G031240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49062	3.9e-27	41.67	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ...	[more]
P35339	4.1e-24	43.17	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1	[more]
P26216	7.6e-23	42.54	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1	[more]
P35338	7.6e-23	42.54	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1	[more]
Q6H9K0	4.6e-20	41.60	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]

BLAST of CsaV3_4G031240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K588	9.8e-106	91.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G353000 PE=3 SV=1	[more]
A0A0A0KAZ2	4.1e-104	90.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398720 PE=3 SV=1	[more]
A0A5A7U4W1	3.0e-94	83.81	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7TQ89	5.0e-94	83.81	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0KMA6	2.7e-87	90.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222970 PE=3 SV=1	[more]

BLAST of CsaV3_4G031240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02790.1	2.8e-28	41.67	polygalacturonase 4	[more]
AT2G15460.1	1.9e-24	43.70	Pectin lyase-like superfamily protein	[more]
AT2G15450.1	1.9e-24	43.70	Pectin lyase-like superfamily protein	[more]
AT2G26620.1	3.2e-24	41.94	Pectin lyase-like superfamily protein	[more]
AT2G15470.1	2.7e-23	42.86	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 115..207 e-value: 3.1E-13 score: 49.5
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 72..231 e-value: 5.7E-25 score: 90.1
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..203
None	No IPR available	PANTHER	PTHR31375:SF158	POLYGALACTURONASE	coord: 1..203
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 82..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031240.1	CsaV3_4G031240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity