Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTCCCAATCACTTTCTCCTTCCAATGCTCTATTCGCCGCAACGGCAAGAGCAGTCTTGCCACCGACGGTCAACCGTTGCAATTCGTCCAACTCCGTTTGAGGCACTTCGGCCAATTGGTTCATACACCTTCCCAGCAAATCCTTCAACAAACTTCCCCCACTTTAATTTCCGATACTCTGATCCCTTTCTCTCTGTGGGAGCTTGAAGATCCACCTTTCATCTCCTACTTCTTCCTCTTTCGTTTTCTCTCTTCCTACGATATCTCCGCCGCCGTCTGTGACGCCATCTTCTACAATATTTCCTCCTTTGCTGGTCAAATATTATTGGCCGCCGATAGCAACATAAATGTCAACTTCCACATCATAGCCGATGTGGATATCGTGTACACGCACTGGGTGGACCTGGACCCAGCAGAAGATGCCCCGGCGGTAAGGAAAGGGGCGTCAACATCGGTGATTGAGAGGGTGATGAAGGAGAAATATGATGGGAATGGAGGGGAAGAGAAGGAAGGTGATGATCAATGCAGTGTTTGTTATGAACAACTGTATGGAAAAAGAGAGAATGAAAACGAAAAGGAAAAGGAAGTGAGCAGAATCCCATGCGGGCACATGTATCATAAGTCATGCATTCTCAAATGGCTTAAAATCAGCAATTCATGTCCTTTGTGCAGAAGGGAATTAGAAGAATAA
mRNA sequence
ATGTCTCTCCCAATCACTTTCTCCTTCCAATGCTCTATTCGCCGCAACGGCAAGAGCAGTCTTGCCACCGACGGTCAACCGTTGCAATTCGTCCAACTCCGTTTGAGGCACTTCGGCCAATTGGTTCATACACCTTCCCAGCAAATCCTTCAACAAACTTCCCCCACTTTAATTTCCGATACTCTGATCCCTTTCTCTCTGTGGGAGCTTGAAGATCCACCTTTCATCTCCTACTTCTTCCTCTTTCGTTTTCTCTCTTCCTACGATATCTCCGCCGCCGTCTGTGACGCCATCTTCTACAATATTTCCTCCTTTGCTGGTCAAATATTATTGGCCGCCGATAGCAACATAAATGTCAACTTCCACATCATAGCCGATGTGGATATCGTGTACACGCACTGGGTGGACCTGGACCCAGCAGAAGATGCCCCGGCGGTAAGGAAAGGGGCGTCAACATCGGTGATTGAGAGGGTGATGAAGGAGAAATATGATGGGAATGGAGGGGAAGAGAAGGAAGGTGATGATCAATGCAGTGTTTGTTATGAACAACTAAGGGAATTAGAAGAATAA
Coding sequence (CDS)
ATGTCTCTCCCAATCACTTTCTCCTTCCAATGCTCTATTCGCCGCAACGGCAAGAGCAGTCTTGCCACCGACGGTCAACCGTTGCAATTCGTCCAACTCCGTTTGAGGCACTTCGGCCAATTGGTTCATACACCTTCCCAGCAAATCCTTCAACAAACTTCCCCCACTTTAATTTCCGATACTCTGATCCCTTTCTCTCTGTGGGAGCTTGAAGATCCACCTTTCATCTCCTACTTCTTCCTCTTTCGTTTTCTCTCTTCCTACGATATCTCCGCCGCCGTCTGTGACGCCATCTTCTACAATATTTCCTCCTTTGCTGGTCAAATATTATTGGCCGCCGATAGCAACATAAATGTCAACTTCCACATCATAGCCGATGTGGATATCGTGTACACGCACTGGGTGGACCTGGACCCAGCAGAAGATGCCCCGGCGGTAAGGAAAGGGGCGTCAACATCGGTGATTGAGAGGGTGATGAAGGAGAAATATGATGGGAATGGAGGGGAAGAGAAGGAAGGTGATGATCAATGCAGTGTTTGTTATGAACAACTAAGGGAATTAGAAGAATAA
Protein sequence
MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQLRELEE*
Homology
BLAST of CsaV3_4G031160 vs. NCBI nr
Match:
KAE8649756.1 (hypothetical protein Csa_012785 [Cucumis sativus])
HSP 1 Score: 376.3 bits (965), Expect = 1.5e-100
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60
MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD
Sbjct: 1 MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60
Query: 61 TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120
TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN
Sbjct: 61 TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120
Query: 121 FHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVC 180
FHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVC
Sbjct: 121 FHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVC 180
Query: 181 YEQLRELEE 190
YEQLRELEE
Sbjct: 181 YEQLRELEE 189
BLAST of CsaV3_4G031160 vs. NCBI nr
Match:
XP_031740500.1 (E3 ubiquitin-protein ligase At1g63170-like [Cucumis sativus])
HSP 1 Score: 367.9 bits (943), Expect = 5.4e-98
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query: 1 MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60
MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD
Sbjct: 1 MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60
Query: 61 TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120
TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN
Sbjct: 61 TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120
Query: 121 FHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVC 180
FHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVC
Sbjct: 121 FHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVC 180
Query: 181 YEQL 185
YEQL
Sbjct: 181 YEQL 184
BLAST of CsaV3_4G031160 vs. NCBI nr
Match:
XP_011650219.1 (RING-H2 finger protein ATL16 [Cucumis sativus] >KGN63362.1 hypothetical protein Csa_022479 [Cucumis sativus])
HSP 1 Score: 246.9 bits (629), Expect = 1.4e-61
Identity = 133/184 (72.28%), Postives = 146/184 (79.35%), Query Frame = 0
Query: 1 MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60
MS P TFSF+CSIR N S AT+GQPLQFV+LRL HF QLV +PS QILQQTSP LISD
Sbjct: 1 MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60
Query: 61 TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120
TLI F L ELEDPPFIS+ L RFLSSY+IS AVCDAIF ISSFA Q++ N+N N
Sbjct: 61 TLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVA---GNLNSN 120
Query: 121 FHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVC 180
FHIIA +D VYTHWVDLDPAEDA AVR+GA S IER+MKEKYDGNGGEE E D+CSVC
Sbjct: 121 FHIIAALDFVYTHWVDLDPAEDAAAVRQGAPRSAIERLMKEKYDGNGGEEME--DECSVC 179
Query: 181 YEQL 185
YE L
Sbjct: 181 YEDL 179
BLAST of CsaV3_4G031160 vs. NCBI nr
Match:
XP_023533113.1 (RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 165.2 bits (417), Expect = 5.4e-37
Identity = 96/187 (51.34%), Postives = 120/187 (64.17%), Query Frame = 0
Query: 6 TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65
+ SFQCS R N +LA+ QP+QFV+LRL H L+ S+QILQQT T + D L PF
Sbjct: 8 SLSFQCSFRTNTTGNLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPMGDALFPF 67
Query: 66 SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125
L +L DPPF+S + RFLSS+ I AVC+ IF ISSFA L A N+++NFHI+
Sbjct: 68 ILRDLLDPPFLSKSHVLRFLSSFTIPIAVCNIIFAEISSFA---LHLAAGNVDLNFHIVV 127
Query: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYE 185
DVD + WVDLDP E +PA GA S IER+ ++K+DG EEKEGD CSVC E
Sbjct: 128 DVDAIEMIWVDLDPFLIEEYSPAAMNGAPASAIERLQRQKFDGLREEEKEGD--CSVCCE 187
Query: 186 QLRELEE 190
L+ EE
Sbjct: 188 ALKGEEE 189
BLAST of CsaV3_4G031160 vs. NCBI nr
Match:
KAG6605223.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 154.8 bits (390), Expect = 7.2e-34
Identity = 90/187 (48.13%), Postives = 118/187 (63.10%), Query Frame = 0
Query: 6 TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65
+ SFQCS R N +LA+ QP+QFV+LRL H L+ S+QILQQT T + D L PF
Sbjct: 8 SLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPMGDALFPF 67
Query: 66 SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125
L +L DPPF+S + RF+SS+ I AVC+ IF ISSFA L A +++++FHI+
Sbjct: 68 ILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFA---LHLAAGDVDLDFHIVV 127
Query: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYE 185
DVD + WVDLDP E +P A S IER+ +E++DG EE+EGD CSVC E
Sbjct: 128 DVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIERLQREEFDGLREEEEEGD--CSVCCE 187
Query: 186 QLRELEE 190
L+ EE
Sbjct: 188 ALKGEEE 189
BLAST of CsaV3_4G031160 vs. ExPASy TrEMBL
Match:
A0A0A0L3Z2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1)
HSP 1 Score: 367.9 bits (943), Expect = 2.6e-98
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query: 1 MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60
MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD
Sbjct: 1 MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60
Query: 61 TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120
TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN
Sbjct: 61 TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120
Query: 121 FHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVC 180
FHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVC
Sbjct: 121 FHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVC 180
Query: 181 YEQL 185
YEQL
Sbjct: 181 YEQL 184
BLAST of CsaV3_4G031160 vs. ExPASy TrEMBL
Match:
A0A0A0LRB0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 PE=4 SV=1)
HSP 1 Score: 246.9 bits (629), Expect = 6.8e-62
Identity = 133/184 (72.28%), Postives = 146/184 (79.35%), Query Frame = 0
Query: 1 MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60
MS P TFSF+CSIR N S AT+GQPLQFV+LRL HF QLV +PS QILQQTSP LISD
Sbjct: 1 MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60
Query: 61 TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120
TLI F L ELEDPPFIS+ L RFLSSY+IS AVCDAIF ISSFA Q++ N+N N
Sbjct: 61 TLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVA---GNLNSN 120
Query: 121 FHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVC 180
FHIIA +D VYTHWVDLDPAEDA AVR+GA S IER+MKEKYDGNGGEE E D+CSVC
Sbjct: 121 FHIIAALDFVYTHWVDLDPAEDAAAVRQGAPRSAIERLMKEKYDGNGGEEME--DECSVC 179
Query: 181 YEQL 185
YE L
Sbjct: 181 YEDL 179
BLAST of CsaV3_4G031160 vs. ExPASy TrEMBL
Match:
A0A6J1L387 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE=4 SV=1)
HSP 1 Score: 154.8 bits (390), Expect = 3.5e-34
Identity = 90/187 (48.13%), Postives = 119/187 (63.64%), Query Frame = 0
Query: 6 TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65
+ SFQ SIR N +LA+ P+QFV+LRL H L+ S+QILQQ+ T + ++L PF
Sbjct: 8 SLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPF 67
Query: 66 SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125
L +LE PPF+ + + FLSS+ I A CD I+ ISSFA + L AD N+++NFHI+
Sbjct: 68 ILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFA--LRLTAD-NVDLNFHIVV 127
Query: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYE 185
DVD + WVDLDP E +P GA S IER+ ++K+DG EE+EGD CSVC E
Sbjct: 128 DVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGD--CSVCCE 187
Query: 186 QLRELEE 190
LR EE
Sbjct: 188 ALRGEEE 189
BLAST of CsaV3_4G031160 vs. ExPASy TrEMBL
Match:
A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1)
HSP 1 Score: 153.7 bits (387), Expect = 7.8e-34
Identity = 91/187 (48.66%), Postives = 118/187 (63.10%), Query Frame = 0
Query: 6 TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65
+ SFQCS R N +LA+ QP+QFV+LRL H L+ S+QILQQT T + D L PF
Sbjct: 8 SLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPMGDALFPF 67
Query: 66 SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125
L +L PPF+S + RFLSS+ I AVC+ IF ISSFA L A N+++NFHI+
Sbjct: 68 ILRDLLHPPFLSKSHVLRFLSSFSIPIAVCNIIFVEISSFA---LHLAAGNVDLNFHIVV 127
Query: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYE 185
DVD + WVDLDP E +P GA S IER+ ++++DG EE+EG +CSVC E
Sbjct: 128 DVDAIEMIWVDLDPFLIEEYSPPAMNGAPASAIERLQRQEFDGL-REEEEG--ECSVCCE 187
Query: 186 QLRELEE 190
L+ EE
Sbjct: 188 ALKGEEE 188
BLAST of CsaV3_4G031160 vs. ExPASy TrEMBL
Match:
A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1)
HSP 1 Score: 153.3 bits (386), Expect = 1.0e-33
Identity = 86/185 (46.49%), Postives = 121/185 (65.41%), Query Frame = 0
Query: 8 SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67
SFQCSI+ ++A+D QP+Q ++LRL + L+ S+QILQQT T + D L PF L
Sbjct: 10 SFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVL 69
Query: 68 WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127
+L+ PPF+S ++ +FLSS+ I A CD I+ ISSFA Q+ A N+++NFHI+ +V
Sbjct: 70 RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNVDLNFHIVVEV 129
Query: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187
D++ WVDLDP E +PA GA S IER+ ++++DG EE+EGD CSVC E L
Sbjct: 130 DVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGD--CSVCCEAL 189
Query: 188 RELEE 190
+ EE
Sbjct: 190 KGEEE 189
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8649756.1 | 1.5e-100 | 100.00 | hypothetical protein Csa_012785 [Cucumis sativus] | [more] |
XP_031740500.1 | 5.4e-98 | 100.00 | E3 ubiquitin-protein ligase At1g63170-like [Cucumis sativus] | [more] |
XP_011650219.1 | 1.4e-61 | 72.28 | RING-H2 finger protein ATL16 [Cucumis sativus] >KGN63362.1 hypothetical protein ... | [more] |
XP_023533113.1 | 5.4e-37 | 51.34 | RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo] | [more] |
KAG6605223.1 | 7.2e-34 | 48.13 | putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L3Z2 | 2.6e-98 | 100.00 | RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 P... | [more] |
A0A0A0LRB0 | 6.8e-62 | 72.28 | RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 P... | [more] |
A0A6J1L387 | 3.5e-34 | 48.13 | RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE... | [more] |
A0A6J1G809 | 7.8e-34 | 48.66 | probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1... | [more] |
A0A6J1G7Z5 | 1.0e-33 | 46.49 | E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC1114... | [more] |
Match Name | E-value | Identity | Description | |