CsaV3_4G030650 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G030650
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 20608587 .. 20609102 (-)
RNA-Seq ExpressionCsaV3_4G030650
SyntenyCsaV3_4G030650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATTGTTTACCTTTACTGTTTTGAATTATTTGATTTGTTATTCCTATATCATATCTTCAATGACTCCAAGGTGTTTTCCTTTCCTTTTCATATATCTGTTCTTCCTCTTCATCATGTCTTCTCCTACAACCCTGATGGCAACTTCAAGAAACATCCTCCCTTTAGAACCCACAACATTGACTAACGATGCATTATCCTTCGTTCAACGATCATCTCGACACCTAGCTACAACTACGACTCCTACTTCTCGTCGCTCTAACTCTCTTAAACTTTCTAAAGGAAGGCATGAACAAACGTCAACAAAGACTCATTCAACCCTTCAAAGTTGCAAGCCAAAAGGACCTATTAGATGGTCTTCTCCTAGTCCATTACGTAATAATTTGAAATGCTAAAAATTCTTAGTTTTCGAGCTTAACAGTTTTTCATCACGAATAATATCATTTATGTATGACTTTTTAATTCTTGTTTTCTTCTTATTTACGTGTATCGATATGATATACTACGATTTTCACCCT

mRNA sequence

ATGACTCCAAGGTGTTTTCCTTTCCTTTTCATATATCTGTTCTTCCTCTTCATCATGTCTTCTCCTACAACCCTGATGGCAACTTCAAGAAACATCCTCCCTTTAGAACCCACAACATTGACTAACGATGCATTATCCTTCGTTCAACGATCATCTCGACACCTAGCTACAACTACGACTCCTACTTCTCGTCGCTCTAACTCTCTTAAACTTTCTAAAGGAAGGCATGAACAAACGTCAACAAAGACTCATTCAACCCTTCAAAGTTGCAAGCCAAAAGGACCTATTAGATGGTCTTCTCCTAGTCCATTACGTAATAATTTGAAATGCTAA

Coding sequence (CDS)

ATGACTCCAAGGTGTTTTCCTTTCCTTTTCATATATCTGTTCTTCCTCTTCATCATGTCTTCTCCTACAACCCTGATGGCAACTTCAAGAAACATCCTCCCTTTAGAACCCACAACATTGACTAACGATGCATTATCCTTCGTTCAACGATCATCTCGACACCTAGCTACAACTACGACTCCTACTTCTCGTCGCTCTAACTCTCTTAAACTTTCTAAAGGAAGGCATGAACAAACGTCAACAAAGACTCATTCAACCCTTCAAAGTTGCAAGCCAAAAGGACCTATTAGATGGTCTTCTCCTAGTCCATTACGTAATAATTTGAAATGCTAA

Protein sequence

MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTTPTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC*
Homology
BLAST of CsaV3_4G030650 vs. NCBI nr
Match: KGN54792.1 (hypothetical protein Csa_012277 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 5.9e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTT 60
           MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTT
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTT 60

Query: 61  PTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 111
           PTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC
Sbjct: 61  PTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 110

BLAST of CsaV3_4G030650 vs. NCBI nr
Match: KAA0060707.1 (hypothetical protein E6C27_scaffold496G00110 [Cucumis melo var. makuwa] >TYK21843.1 hypothetical protein E5676_scaffold1073G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 8.5e-35
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 0

Query: 19  MSSPTTLMATSRNILPLEPTTLTNDAL-SFVQRSSRHLATTTTPTSRRSNSLKLSKGRHE 78
           MSSPTTLMATSRN LPLEPTTLTNDAL +F+QRSSRHLATTTTPTSR SNSLKLSKG+ E
Sbjct: 1   MSSPTTLMATSRNTLPLEPTTLTNDALPAFIQRSSRHLATTTTPTSRPSNSLKLSKGKQE 60

Query: 79  QTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 111
           QTST THSTL SCKPKGP+RWSSPSPLRNN++C
Sbjct: 61  QTSTATHSTLHSCKPKGPVRWSSPSPLRNNVEC 93

BLAST of CsaV3_4G030650 vs. NCBI nr
Match: KGN54790.1 (hypothetical protein Csa_012154 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-27
Identity = 78/111 (70.27%), Postives = 86/111 (77.48%), Query Frame = 0

Query: 1   MTPRCFPFLFIYLFFLFIMSSPTTL-MATSRNILPLEPTTLTNDALSFVQRSSRHLATTT 60
           M  RCFPFLFIYL FLFIMSS T L MATSRN+LPL PTTLTN+AL F Q+SSR+L  TT
Sbjct: 1   MALRCFPFLFIYL-FLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATT 60

Query: 61  TPTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 111
           T T   S +LK+ K   EQTST THSTLQSC PKGPI WSSPSP RN ++C
Sbjct: 61  TSTMTHS-TLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 109

BLAST of CsaV3_4G030650 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 7.5e-07
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 0

Query: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTT 60
           M PR   FL I  F L ++SSP+T++ATSR++L L+            + S         
Sbjct: 1   MGPRGGAFLTIIFFLLIVISSPSTIIATSRHMLALD-----------TKESPPQPPMDKP 60

Query: 61  PTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNL 109
           PTS   ++L L  G  +       S ++SCKPKGP+RWSSPSP+RNNL
Sbjct: 61  PTSNDFDTLSLPNGT-KAMPPMPESAVRSCKPKGPVRWSSPSPIRNNL 96

BLAST of CsaV3_4G030650 vs. ExPASy TrEMBL
Match: A0A0A0L2F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.8e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTT 60
           MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTT
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTT 60

Query: 61  PTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 111
           PTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC
Sbjct: 61  PTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 110

BLAST of CsaV3_4G030650 vs. ExPASy TrEMBL
Match: A0A5A7V1K1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00050 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.1e-35
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 0

Query: 19  MSSPTTLMATSRNILPLEPTTLTNDAL-SFVQRSSRHLATTTTPTSRRSNSLKLSKGRHE 78
           MSSPTTLMATSRN LPLEPTTLTNDAL +F+QRSSRHLATTTTPTSR SNSLKLSKG+ E
Sbjct: 1   MSSPTTLMATSRNTLPLEPTTLTNDALPAFIQRSSRHLATTTTPTSRPSNSLKLSKGKQE 60

Query: 79  QTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 111
           QTST THSTL SCKPKGP+RWSSPSPLRNN++C
Sbjct: 61  QTSTATHSTLHSCKPKGPVRWSSPSPLRNNVEC 93

BLAST of CsaV3_4G030650 vs. ExPASy TrEMBL
Match: A0A0A0KYN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499280 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.9e-28
Identity = 78/111 (70.27%), Postives = 86/111 (77.48%), Query Frame = 0

Query: 1   MTPRCFPFLFIYLFFLFIMSSPTTL-MATSRNILPLEPTTLTNDALSFVQRSSRHLATTT 60
           M  RCFPFLFIYL FLFIMSS T L MATSRN+LPL PTTLTN+AL F Q+SSR+L  TT
Sbjct: 1   MALRCFPFLFIYL-FLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATT 60

Query: 61  TPTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 111
           T T   S +LK+ K   EQTST THSTLQSC PKGPI WSSPSP RN ++C
Sbjct: 61  TSTMTHS-TLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54792.15.9e-52100.00hypothetical protein Csa_012277 [Cucumis sativus][more]
KAA0060707.18.5e-3587.10hypothetical protein E6C27_scaffold496G00110 [Cucumis melo var. makuwa] >TYK2184... [more]
KGN54790.11.0e-2770.27hypothetical protein Csa_012154 [Cucumis sativus][more]
KAG6595583.17.5e-0740.74hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2F62.8e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1[more]
A0A5A7V1K14.1e-3587.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KYN04.9e-2870.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499280 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G030650.1CsaV3_4G030650.1mRNA