CsaV3_4G030230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G030230
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 19960484 .. 19960812 (+)
RNA-Seq ExpressionCsaV3_4G030230
SyntenyCsaV3_4G030230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCCAACATGATGTTGTTTTCTTCACATTCTTCTTCCTCATTGCCATGTCTTCTCCATCCAAAATCATGGCAACTACTAGAGGCATGCTTGATTTAGCACAACCTCCAACGACTCTGGAAGAATCTACCATTCGTAATTTTAGAGAATCTATTGCTGAAGTACCTGAATCATCGTCATCAATTTCCCTTCCTCCAACTTCTGACGAGTTTATTAGTTTTGATCCCAATGGAATGGGTGCAAGGGCACCATTGCCTGCATCATTGTTAGATTGCAAGCCCAAAGGACCAATTGCATGGTCTGCTCCCAATCCCAAACACAACAT

mRNA sequence

ATGGCTTTCCAACATGATGTTGTTTTCTTCACATTCTTCTTCCTCATTGCCATGTCTTCTCCATCCAAAATCATGGCAACTACTAGAGGCATGCTTGATTTAGCACAACCTCCAACGACTCTGGAAGAATCTACCATTCGTAATTTTAGAGAATCTATTGCTGAAGTACCTGAATCATCGTCATCAATTTCCCTTCCTCCAACTTCTGACGAGTTTATTAGTTTTGATCCCAATGGAATGGGTGCAAGGGCACCATTGCCTGCATCATTGTTAGATTGCAAGCCCAAAGGACCAATTGCATGGTCTGCTCCCAATCCCAAACACAACAT

Coding sequence (CDS)

ATGGCTTTCCAACATGATGTTGTTTTCTTCACATTCTTCTTCCTCATTGCCATGTCTTCTCCATCCAAAATCATGGCAACTACTAGAGGCATGCTTGATTTAGCACAACCTCCAACGACTCTGGAAGAATCTACCATTCGTAATTTTAGAGAATCTATTGCTGAAGTACCTGAATCATCGTCATCAATTTCCCTTCCTCCAACTTCTGACGAGTTTATTAGTTTTGATCCCAATGGAATGGGTGCAAGGGCACCATTGCCTGCATCATTGTTAGATTGCAAGCCCAAAGGACCAATTGCATGGTCTGCTCCCAATCCCAAACACAACAT

Protein sequence

MAFQHDVVFFTFFFLIAMSSPSKIMATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESSSSISLPPTSDEFISFDPNGMGARAPLPASLLDCKPKGPIAWSAPNPKHNX
Homology
BLAST of CsaV3_4G030230 vs. NCBI nr
Match: KAE8649709.1 (hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothetical protein Csa_012458, partial [Cucumis sativus] >KGN55007.2 hypothetical protein Csa_012551, partial [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query: 1   MAFQHDVVFFTFFFLIAMSSPSKIMATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESS 60
           MAFQHDVVFFTFFFLIAMSSPSKIMATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESS
Sbjct: 1   MAFQHDVVFFTFFFLIAMSSPSKIMATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESS 60

Query: 61  SSISLPPTSDEFISFDPNGMGARAPLPASLLDCKPKGPIAWSAPNPKHN 110
           SSISLPPTSDEFISFDPNGMGARAPLPASLLDCKPKGPIAWSAPNPKHN
Sbjct: 61  SSISLPPTSDEFISFDPNGMGARAPLPASLLDCKPKGPIAWSAPNPKHN 109

BLAST of CsaV3_4G030230 vs. NCBI nr
Match: KAE8649707.1 (hypothetical protein Csa_012825 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 4.5e-52
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 0

Query: 1   MAFQHDVVFFTFFFLIAMSSPSKIMATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESS 60
           MAFQHDVVFFTFFFLIAMSSPSKI+ATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESS
Sbjct: 1   MAFQHDVVFFTFFFLIAMSSPSKIIATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESS 60

Query: 61  SSISLPPTSDEFISFDPNGMGARAPLPASLLDCKPKGPIAWSAPNPKHN 110
           SSISLPPTSDEFISFDPNGMGARAPLPASLLDCKPKGPIAWSAPNPKHN
Sbjct: 61  SSISLPPTSDEFISFDPNGMGARAPLPASLLDCKPKGPIAWSAPNPKHN 109

BLAST of CsaV3_4G030230 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-06
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 0

Query: 12  FFFLIAMSSPSKIMATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESSSSISLPPTSDE 71
           FF LI +SSPS I+AT+R ML L             + +ES  + P     +  PPTS++
Sbjct: 13  FFLLIVISSPSTIIATSRHMLAL-------------DTKESPPQPP-----MDKPPTSND 72

Query: 72  FISFD-PNGMGARAPLPASLL-DCKPKGPIAWSAPNPKHN 110
           F +   PNG  A  P+P S +  CKPKGP+ WS+P+P  N
Sbjct: 73  FDTLSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPIRN 94

BLAST of CsaV3_4G030230 vs. NCBI nr
Match: TYK09256.1 (hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 0

Query: 1   MAFQHDVVFFTFFFLIAMSSPSKIMATTRGMLDLAQPPT--TLEESTIRNFRESIAEVPE 60
           MA     + F  F ++A++S S  MAT+R ML +A  PT  T   + I + + S +  P 
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  S---------SSSISLPPTSDEFISFD-PNGMGARAPLPASLL-DCKPKGPIAWSAPNPK 110
           S         SSS S+PP+  +F++F+ P+ + A  P P  ++  CKPKG + +SAP+ +
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

BLAST of CsaV3_4G030230 vs. ExPASy TrEMBL
Match: A0A5D3CFX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002500 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.8e-05
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 0

Query: 1   MAFQHDVVFFTFFFLIAMSSPSKIMATTRGMLDLAQPPT--TLEESTIRNFRESIAEVPE 60
           MA     + F  F ++A++S S  MAT+R ML +A  PT  T   + I + + S +  P 
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  S---------SSSISLPPTSDEFISFD-PNGMGARAPLPASLL-DCKPKGPIAWSAPNPK 110
           S         SSS S+PP+  +F++F+ P+ + A  P P  ++  CKPKG + +SAP+ +
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649709.11.5e-52100.00hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothe... [more]
KAE8649707.14.5e-5299.08hypothetical protein Csa_012825 [Cucumis sativus][more]
KAG6595583.13.7e-0641.00hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK09256.11.2e-0434.43hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFX35.8e-0534.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G030230.1CsaV3_4G030230.1mRNA