CsaV3_4G029920 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029920
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionVacuolar fusion protein MON1 homolog
Locationchr4: 19630104 .. 19630483 (-)
RNA-Seq ExpressionCsaV3_4G029920
SyntenyCsaV3_4G029920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCTTCCTCTTCTTCAAAAGCTATGGAAACTAGGCTGACCAATGTCGAAAAAACTGTTGGTGAAATTCAAGGGGAATTAGGAGAAATCCATTCAATGTTAGGGGAGATTTTGCAGAACCTAACCATAACTTTTGAAACCCACAAAGAACCTGCCAAATTAGCCCTCATTCAAAGAAAACAAATACTAGAGAAGCAAGATTCTGGAGATGACATGGCTGCCAACATCAATTTTCCTCTAAATGAAGGCACAGACTTTGCAAGAAACCTAGGAAAAACCAAGATCACCCGAAATCCTTATCCAGAATTCCAAATGAAAAAAGAACACAATCCAAGAAACTTATATCAAGCAAGATTCAAACCTGAAGATTACCACAAGTAA

mRNA sequence

GCTTCCTCTTCTTCAAAAGCTATGGAAACTAGGCTGACCAATGTCGAAAAAACTGTTGGTGAAATTCAAGGGGAATTAGGAGAAATCCATTCAATGTTAGGGGAGATTTTGCAGAACCTAACCATAACTTTTGAAACCCACAAAGAACCTGCCAAATTAGCCCTCATTCAAAGAAAACAAATACTAGAGAAGCAAGATTCTGGAGATGACATGGCTGCCAACATCAATTTTCCTCTAAATGAAGGCACAGACTTTGCAAGAAACCTAGGAAAAACCAAGATCACCCGAAATCCTTATCCAGAATTCCAAATGAAAAAAGAACACAATCCAAGAAACTTATATCAAGCAAGATTCAAACCTGAAGATTACCACAAGTA

Coding sequence (CDS)

GCTTCCTCTTCTTCAAAAGCTATGGAAACTAGGCTGACCAATGTCGAAAAAACTGTTGGTGAAATTCAAGGGGAATTAGGAGAAATCCATTCAATGTTAGGGGAGATTTTGCAGAACCTAACCATAACTTTTGAAACCCACAAAGAACCTGCCAAATTAGCCCTCATTCAAAGAAAACAAATACTAGAGAAGCAAGATTCTGGAGATGACATGGCTGCCAACATCAATTTTCCTCTAAATGAAGGCACAGACTTTGCAAGAAACCTAGGAAAAACCAAGATCACCCGAAATCCTTATCCAGAATTCCAAATGAAAAAAGAACACAATCCAAGAAACTTATATCAAGCAAGATTCAAACCTGAAGATTACCACAAGTA

Protein sequence

ASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALIQRKQILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQARFKPEDYHKX
Homology
[Close]
BLAST of CsaV3_4G029920 vs. NCBI nr
Match: KAE8649694.1 (hypothetical protein Csa_023749, partial [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 4.2e-62
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   ASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALIQRKQ 60
           ASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALIQRKQ
Sbjct: 1   ASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALIQRKQ 60

Query: 61  ILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQARFKP 120
           ILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQARFKP
Sbjct: 61  ILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQARFKP 120

Query: 121 EDYHK 126
           EDYHK
Sbjct: 121 EDYHK 125

[Close]
BLAST of CsaV3_4G029920 vs. NCBI nr
Match: KGN51219.1 (hypothetical protein Csa_007960 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 0 

Query: 8   METRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALIQRKQILEKQDS 67
           METRLTNVEK+VGEIQGEL EI SM  EILQNL I  ET++E A+LA  ++ QI E+QD 
Sbjct: 1   METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60

Query: 68  GDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMK 106
           GDD A N N  LNE  + ARN  K KI + PY + +MK
Sbjct: 61  GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMK 98

[Close]
BLAST of CsaV3_4G029920 vs. NCBI nr
Match: KAA0032564.1 (protein SAND [Cucumis melo var. makuwa] >TYK20920.1 protein SAND [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 0 

Query: 3   SSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTI-TFETHKEPAKLALIQRKQI 62
           SS K M+ RLTNV K+V EIQGE+GEI SMLG+IL+N++I + + ++E A+  L    +I
Sbjct: 297 SSVKTMDIRLTNVAKSVSEIQGEIGEIRSMLGQILKNMSIQSGKINREHAETTLKGGIRI 356

Query: 63  LEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQARFKPE 122
             KQDSGDD AANI+F +N+  +  RN GK KI    + E +MK       + +   K +
Sbjct: 357 QGKQDSGDDRAANIDFAVNKDENPTRNPGKNKIGEACFQEIRMK----TNQIQETCIKQD 416

Query: 123 DYHK 126
            YHK
Sbjct: 417 SYHK 416

[Close]
BLAST of CsaV3_4G029920 vs. ExPASy TrEMBL
Match: A0A0A0L2A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G441080 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.0e-62
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   ASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALIQRKQ 60
           ASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALIQRKQ
Sbjct: 5   ASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALIQRKQ 64

Query: 61  ILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQARFKP 120
           ILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQARFKP
Sbjct: 65  ILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQARFKP 124

Query: 121 EDYHK 126
           EDYHK
Sbjct: 125 EDYHK 129

[Close]
BLAST of CsaV3_4G029920 vs. ExPASy TrEMBL
Match: A0A0A0KQP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G494380 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.6e-20
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 0 

Query: 8   METRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALIQRKQILEKQDS 67
           METRLTNVEK+VGEIQGEL EI SM  EILQNL I  ET++E A+LA  ++ QI E+QD 
Sbjct: 1   METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60

Query: 68  GDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMK 106
           GDD A N N  LNE  + ARN  K KI + PY + +MK
Sbjct: 61  GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMK 98

[Close]
BLAST of CsaV3_4G029920 vs. ExPASy TrEMBL
Match: A0A5A7SN13 (Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00630 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 0 

Query: 3   SSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTI-TFETHKEPAKLALIQRKQI 62
           SS K M+ RLTNV K+V EIQGE+GEI SMLG+IL+N++I + + ++E A+  L    +I
Sbjct: 297 SSVKTMDIRLTNVAKSVSEIQGEIGEIRSMLGQILKNMSIQSGKINREHAETTLKGGIRI 356

Query: 63  LEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQARFKPE 122
             KQDSGDD AANI+F +N+  +  RN GK KI    + E +MK       + +   K +
Sbjct: 357 QGKQDSGDDRAANIDFAVNKDENPTRNPGKNKIGEACFQEIRMK----TNQIQETCIKQD 416

Query: 123 DYHK 126
            YHK
Sbjct: 417 SYHK 416

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029920 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649694.14.2e-62100.00hypothetical protein Csa_023749, partial [Cucumis sativus][more]
KGN51219.11.1e-1960.20hypothetical protein Csa_007960 [Cucumis sativus][more]
KAA0032564.12.9e-1545.97protein SAND [Cucumis melo var. makuwa] >TYK20920.1 protein SAND [Cucumis melo v... [more]
BLAST of CsaV3_4G029920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2A52.0e-62100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G441080 PE=4 SV=1[more]
A0A0A0KQP45.6e-2060.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G494380 PE=4 SV=1[more]
A0A5A7SN131.4e-1545.97Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of CsaV3_4G029920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029920.1CsaV3_4G029920.1mRNA