CsaV3_4G029840 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029840
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionYcf68 protein (Chloroplast)
Locationchr4: 19568597 .. 19568823 (-)
RNA-Seq ExpressionCsaV3_4G029840
SyntenyCsaV3_4G029840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAATTGTCGGTGATAAGCCAGAGGAAGGTGAGGATGATGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGTTATAATGGCCGGGACAAAGAGTTGTGATCCCGCGAAGGTGAGCTAACTCCAAAATCTCATCCTCAGTTCGGATTGTAGGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAAGATGCCTATGCTTCTTGCTACATGA

mRNA sequence

ATGAGTAAATTGTCGGTGATAAGCCAGAGGAAGGTGAGGATGATGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGTTATAATGGCCGGGACAAAGAGTTGTGATCCCGCGAAGGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAAGATGCCTATGCTTCTTGCTACATGA

Coding sequence (CDS)

ATGAGTAAATTGTCGGTGATAAGCCAGAGGAAGGTGAGGATGATGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGTTATAATGGCCGGGACAAAGAGTTGTGATCCCGCGAAGGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAAGATGCCTATGCTTCTTGCTACATGA

Protein sequence

MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLAT*
Homology
BLAST of CsaV3_4G029840 vs. NCBI nr
Match: KGN54736.1 (hypothetical protein Csa_012261 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 6.5e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA 60
          MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA
Sbjct: 1  MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA 60

Query: 61 T 62
          T
Sbjct: 61 T 61

BLAST of CsaV3_4G029840 vs. NCBI nr
Match: KAF1866114.1 (hypothetical protein Lal_00043067 [Lupinus albus])

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-08
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 0

Query: 10  RKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIAS 54
           RKVRM SSHHAPYALGDTR  M+GTK   P++AATRLHE  IAS
Sbjct: 105 RKVRMTSSHHAPYALGDTRATMSGTKDRYPSRAATRLHEAEIAS 148

BLAST of CsaV3_4G029840 vs. NCBI nr
Match: PHT34165.1 (hypothetical protein CQW23_25965 [Capsicum baccatum])

HSP 1 Score: 63.5 bits (153), Expect = 7.2e-07
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 1  MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAK 42
          +++L VIS+RKVRM SSHHAPYALGDTR  MAGTK  DPA+
Sbjct: 56 LNRLPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPAR 96

BLAST of CsaV3_4G029840 vs. NCBI nr
Match: CAA7013179.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 63.5 bits (153), Expect = 7.2e-07
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 1   MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAA 44
           +++L VIS+RKVRM SSHHAPYALGDTR  MAGTK  DPA+ +
Sbjct: 89  LNRLPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPARVS 131

BLAST of CsaV3_4G029840 vs. NCBI nr
Match: VFQ70667.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 63.5 bits (153), Expect = 7.2e-07
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 1  MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAK 42
          +++L VIS+RKVRM SSHHAPYALGDTR  MAGTK  DPA+
Sbjct: 32 LNRLPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPAR 72

BLAST of CsaV3_4G029840 vs. ExPASy TrEMBL
Match: A0A0A0L3L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G438540 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.1e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA 60
          MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA
Sbjct: 1  MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA 60

Query: 61 T 62
          T
Sbjct: 61 T 61

BLAST of CsaV3_4G029840 vs. ExPASy TrEMBL
Match: A0A6N2L1K4 (Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS104494 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.3e-09
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 14 MMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIAS 54
          M SSHHAPYALGDTR  MAGTK  DPA+AATRLHE GIAS
Sbjct: 1  MTSSHHAPYALGDTRATMAGTKGRDPARAATRLHEAGIAS 40

BLAST of CsaV3_4G029840 vs. ExPASy TrEMBL
Match: A0A6A5LUN7 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043067 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 0

Query: 10  RKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIAS 54
           RKVRM SSHHAPYALGDTR  M+GTK   P++AATRLHE  IAS
Sbjct: 105 RKVRMTSSHHAPYALGDTRATMSGTKDRYPSRAATRLHEAEIAS 148

BLAST of CsaV3_4G029840 vs. ExPASy TrEMBL
Match: A0A6D2HBK0 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS413 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-07
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 1   MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAA 44
           +++L VIS+RKVRM SSHHAPYALGDTR  MAGTK  DPA+ +
Sbjct: 89  LNRLPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPARVS 131

BLAST of CsaV3_4G029840 vs. ExPASy TrEMBL
Match: A0A2G2VMF2 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_25965 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-07
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 1  MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAK 42
          +++L VIS+RKVRM SSHHAPYALGDTR  MAGTK  DPA+
Sbjct: 56 LNRLPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPAR 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54736.16.5e-24100.00hypothetical protein Csa_012261 [Cucumis sativus][more]
KAF1866114.13.8e-0875.00hypothetical protein Lal_00043067 [Lupinus albus][more]
PHT34165.17.2e-0773.17hypothetical protein CQW23_25965 [Capsicum baccatum][more]
CAA7013179.17.2e-0769.77unnamed protein product [Microthlaspi erraticum][more]
VFQ70667.17.2e-0773.17unnamed protein product [Cuscuta campestris][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3L93.1e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G438540 PE=4 SV=1[more]
A0A6N2L1K46.3e-0982.50Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS104494 PE... [more]
A0A6A5LUN71.8e-0875.00Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043067 PE=4 SV=1[more]
A0A6D2HBK03.5e-0769.77Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS413 PE... [more]
A0A2G2VMF23.5e-0773.17Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_25965 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029840.1CsaV3_4G029840.1mRNA