CsaV3_4G029390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029390
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionNDR1/HIN1-Like protein 3
Locationchr4: 18919877 .. 18924515 (-)
RNA-Seq ExpressionCsaV3_4G029390
SyntenyCsaV3_4G029390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTGACAGATGAAAGCAGTGGTGGAGAGGTCGACGACGAGTTGGTCGATTCGTTGAAGGCGATAGTGAAGAGAAAAGTTGGATTGGCGTTGGAGATTAAGGTGGACACAAAAGTGCAGGTGAACATGAGATGGTTGAAGATGTCGAAGGTTGGACTTAGGAAGCATTGCGACGAAATTATGATGGTTGTTTCGACAAGAGTAAGAAGAAGACAAGGGTTGTTGCACGGTCCGAGAATGCAAAGGGGTGGATTTTAGAGTGAAGACTTGGAAATGGATTGTTTGAATTTTTAGAAAATGACGATGTAAGAGAGGGAAGGTACCCAACCTTATCCTTACCCTTTAAGCTGATCTTGAACATTGATCCATGTATGTCTCTACATACTGTTCAAGACTCATTAAACAGCTTAGGATGTTAGTTTATTGGATTTGGGTTATTAAGACAAAACTAATAATTTAATCAATAACAATTATTACAATAATAACACTTTACGTCAATAGAGATGAAGATGAATGAGACGAACGAATGAAAATTTTGAAATTGACTTCAATGGAGATGATGAAGATGAATAAGTTTGGGGGAATTGGGGATTTGATGGTTTGACTTTTAATTGCTTTATTGTTTTGGTAGGGTAAAATTAGGACAAGAGCTGAAAAGCTTGTTGTTGAAGCTCATGATTTACAGGTCTATTAAGTTCCCTTGCTAACTCATATGGAATAAACTTAGAATAGTTTGATGGAAAAATAATAATTCAAATTGTTTGGATTATGTAAAGAAAGAGAAATCGATAAATATATATGATATAGTCGTTAGTTATTAGTTAGAGATAGCTCTTTAATGTTTCAATGTTATTTAAATATAAAAAATATGAACGTGGATTCATACTTAAAAGCTCGAAAATGATGGAAATAGTCAAAGTTGTAAAAAGTCAAAGAGTTGAATTTTGTCTTTGAAAAGTCAAACTTTGACCAACAATATATTCAAATGTAATTATTTTAGAAAATGAATGCGAATTCATGTTTGGGAGGTCGAAATTAGTTAAGACAGTCATAATGGTAAAGAGTCAAAATGTTTACTTTTGGTTTGAAGAGTCAATCAGAATTTCGAGTATATGGAAGTATGAAGATAGGATTTAGAGTTTGATGTTAATTAACAGCAATTAGGATAATATATATATATGTAGATTTGGTTTCGAGTGTGCATGTCCAAAATATAGCATGTGAACTTTGGATGATTAAAGAAAAGAAGACCCAAATCACTTGAAGGTTAAAGTGAAATGTGTGGAAACCGAATGAAAGAAGTTGGAATGAGGTTGAAAGTAAATATACATTCTTTTTTGTGGGTTTTTGAAATTCAGTTTGTTTAGGAATAAAACTTTCAAATTAAGAATGGTGAAATTTAGAAAGAGTAAGACGTTGAAAAAGCTTAATCCATTAACAGGTTAGATATCGTTTGGAATTAGAACCACAAGAATGGAGAATTTGATAAACTAAGAAAGCGTGGATAATTTTTAAGAAAAAGAGAGAAAAACTCCAAATTTGTCTCAAAATCCCAAAATTTCTTCTCTTTCTGAACGAAGAAAAAACAAAAAATGTAGAGGCCATCAAGTTGTAGAAATTGAGTAGAACCTTTAATGAACTCTAAAAATTAAATAAAACTTAAATGATTCAATTATGCATTCATAGGATAAAAGATGAAAAGAAATGAAGAATGAGAAAGAAATAAACCAAAAATATTTGAAGAGTTAAAATAAAATGAAGATGAAAATAGAAAAGCAAAATAAAATGAGATTTAAAGGTGAATATGGCATTGGGTGTAGAGAGTTGTGAATTGGAAAGGACAAGGGTGTGGTCACCATCACCTGCAATCCCTATTTACGAAGCAATTATGTGAAAACCAAATATCACACTATTGTTTTTTCTTTTATTCTTTCAACCTTCAGCATATTTGAATTTTGTGTATCTAATTTCTTACTTCATAAAATATATTTTCAACTCTTTCAATTCACTTAACTTAAGCCTAACATAGAGAAAACAAATTGATAAGAATTAAAAATATTTTTTTTTCAAATTCATATCTTCCAAAACTTAAAAATTTATAATTAAATTATTTGAAGATTGGATGTGTTTTTATTAGTTTATATTTTTTTTATATATGAGTAACACGTTATTACCTTTTTAGAGATATCTTTTAATTTCCAACCTACTCTTTTTATTATTCATTTTTAGTAGACATCTTTCTTTGTATTGATGTGTTACACGATCGGGTTAAGTTTGACACTAACGTGCCTTTTTTAACATCAAATCTCACAATCTATGGGAATTACGAAACATGTATGTACCTTTTCATACCTAGTTTGGATTAACGTTTTTTATAAAAACATAAAAATATTTGCTTATAAATACTTATTTAAATACCAAGATTATCAATCCAAACACCACTTTGGACTTCTTTTCTATATTTGAATGAAGCTCCCATGCTATTTCTTTTGTCAATGTTATTTATATTTTGTCTCTTTCTACCCATTTTCAAAACTTTCACATCGTCTTGTTGTTTTCAAGATGAATTTTGAATCTAATTTTGTATGTTTTAGATACTAAATGTTAAAAATAAATGAAAATTTTAAATCACAAGTATGTAACCACACTCAATGTTCAAAATCTATATTTTGTACATAGGTTTTTGGTATGTTTCGTTGTCGAACAAAGACAAATATTATATTGTCAATATCGGTAGTACCTATTCCCTTCTTGAAATTCTTTCAATCTTAATGACTAATGATCACTTTCATCCAGATGTGATCTAGTTAGTTTGTGTAATTTTCCTATGCTCAAGTGTTACATATTAAATAGGTAATTAAATAAAGAAAAAAAAAATTTATGTGTTGTTTCTCTTTCAAATGTTTATGAAAATTTGACATCAAGAGTTAAAATATTTGTAGGTATGATAAATTAAACCTAGTTTAATTAAATAATATAGAATTATATAATGCTAAATTGCAAAAACCATCCCTAAAATATGGTTTTTGCAATTATATCCTTAAAGTTCTAATAGCAACAATTGGACCAAAAAACTTCTAAAAGTGTTAAAATTGTACCCTCGAGTTTACAATAATTGTAAAAATTAAATCCACATATGATAAAGAGAATTGAATTCTCAAACTTATATAATCAATATTATTTATACAATTACAAGTTTGATGATCCAATTTTAAAATTTTGGACAAATTTGGGAACTGAATTTTTCAATTTTGAAAGGTTAAAGGTATAATGGCAGCTATCACCATATTTTAGCATGCTTTTTGCAATTTACCCATTATATTATACATTGTTTTAAAATTGAAAAGTTGATAATTTAATTTCCCATCTTATAATATAGTTGAACTCATTATGTATATTTAGGGATTACAATTATATATATATATATATATACAAACTAGAAACAAAAGTTAAGAAAAGTGTGTTAGATATAGACCAATGTCATAATATAAATATAGTTATCGATCCAAATTTAAAGGTAATTACAATAGGTAACAATTTTAGGAATAATAATCAAGTGTATAACATCATTTAAAAAAACTACAAAGATAGCAAAGTTAGAAGTGATAGCGTCGTATGTTCTATCAGTGACAGACCAACACTACTAGACCATAAAAGTCTATTAACAATGGCAGAAGTCTATGGTTGATACACTTTGTTATGTTTATAAATTTTAAACTTTTGCTATATATATATTCTTTTCTTGAATTTGATTGTTATATTTGCAATTGTTCCCTCAATATCAATTCTTTTATTCAAAGCACTAAATTGTTTAAGGTTTATTTTAGGATATAACAAGAATTATTTATAGAAATATTATTGTTATTTTGATTGGTAGTTTTCCTAAATACGTGTAAGTTCATTAGGTATTTATATTGTCCATTCTTATCAATAAATGTTTGAGAAAGTCATTTACCTCTATTATTTTAATATGATATCAAATGATGTTCATTAAAAACTACTAAGAGTTGTTTCCTCTCCGATGCATAACAAAGACGAACAACTGCTTTCGTTCAATCCTATAACAAAGACGAACAACTGCTTTCGCCTCAACCACTGATGAGCTCACCATCAACTTCATTGTCTTCTCTTCGATATGCTATTGAACACTATACAAATCCGTACTTTCTTCACCACTCTCACAACACAAGCCTCATTCTTATGTTGAATCCTTTCACCAAGATAAATTACACATATCCGAGCCAAACAAATATTATTGGTCTCACAATGAAGAATAAGCTTGGATTTGTTGACAAAACAATCACTCAACCCTACAGAGAACTACACCACTCCTAGATCATCTACAACGGTGTCATAACCTCATGGATCTTAAACACACTTTCGAAAGAAATTGCAACGTATGTAAATTTCTTAGATTCTCCTAGAGAAATTTGGCTCGATTTACAAGAACACTACAAGTGTAAGAATCATCTACGAGTTTATCAGATTCAACGAGAATTAACCACAGTTGTTCAAGATCATGATTAAGTCACTACCTACTATGCCAAAATCAAGGCTCTATGGAATGAACTTGAATCCTATTGCCCCACTTGCTCTTGTGGAAAATGTACCCGTGATGGAGTCAAAGATCTTGTGA

mRNA sequence

ATGAAGGTGACAGATGAAAGCAGTGGTGGAGAGGTCGACGACGAGTTGGTCGATTCGTTGAAGGCGATAGTGAAGAGAAAAGTTGGATTGGCGTTGGAGATTAAGGTGGACACAAAAGTGCAGGTGAACATGAGATGGTTGAAGATGTCGAAGGTTGGACTTAGGAAGCATTGCGACGAAATTATGATGGTTGTTTCGACAAGATTGTTCAAGATCATGATTAAGTCACTACCTACTATGCCAAAATCAAGGCTCTATGGAATGAACTTGAATCCTATTGCCCCACTTGCTCTTGTGGAAAATGTACCCGTGATGGAGTCAAAGATCTTGTGA

Coding sequence (CDS)

ATGAAGGTGACAGATGAAAGCAGTGGTGGAGAGGTCGACGACGAGTTGGTCGATTCGTTGAAGGCGATAGTGAAGAGAAAAGTTGGATTGGCGTTGGAGATTAAGGTGGACACAAAAGTGCAGGTGAACATGAGATGGTTGAAGATGTCGAAGGTTGGACTTAGGAAGCATTGCGACGAAATTATGATGGTTGTTTCGACAAGATTGTTCAAGATCATGATTAAGTCACTACCTACTATGCCAAAATCAAGGCTCTATGGAATGAACTTGAATCCTATTGCCCCACTTGCTCTTGTGGAAAATGTACCCGTGATGGAGTCAAAGATCTTGTGA

Protein sequence

MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDEIMMVVSTRLFKIMIKSLPTMPKSRLYGMNLNPIAPLALVENVPVMESKIL*
Homology
[Close]
BLAST of CsaV3_4G029390 vs. NCBI nr
Match: KAE8649666.1 (hypothetical protein Csa_012678 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60
           MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE
Sbjct: 1   MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60

Query: 61  IMMVVSTRLFKIMIKSLPTMPKSRLYGMNLNPIAPLALVENVPVMESKIL 111
           IMMVVSTRLFKIMIKSLPTMPKSRLYGMNLNPIAPLALVENVPVMESKIL
Sbjct: 61  IMMVVSTRLFKIMIKSLPTMPKSRLYGMNLNPIAPLALVENVPVMESKIL 110

[Close]
BLAST of CsaV3_4G029390 vs. NCBI nr
Match: XP_008462352.1 (PREDICTED: NDR1/HIN1-Like protein 3 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 0 

Query: 1   MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60
           MKVT ESSGGE++ E VDSLKA VK K GL LEIKV+TKV+V M WLKM KVGLR HCD 
Sbjct: 168 MKVTVESSGGEIEGESVDSLKAAVKSKAGLPLEIKVETKVKVKMGWLKMPKVGLRAHCDG 227

Query: 61  IMMVVST 68
           I  VV T
Sbjct: 228 ITAVVPT 234

[Close]
BLAST of CsaV3_4G029390 vs. NCBI nr
Match: ADN34111.1 (chaperonin-60 kDa protein [Cucumis melo subsp. melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 0 

Query: 1   MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60
           MKVT ESSGGE++ E VDSLKA VK K GL LEIKV+TKV+V M WLKM KVGLR HCD 
Sbjct: 168 MKVTVESSGGEIEGESVDSLKAAVKSKAGLPLEIKVETKVKVKMGWLKMPKVGLRAHCDG 227

Query: 61  IMMVVST 68
           I  VV T
Sbjct: 228 ITAVVPT 234

[Close]
BLAST of CsaV3_4G029390 vs. NCBI nr
Match: KAA0059430.1 (NDR1/HIN1-Like protein 3 [Cucumis melo var. makuwa] >TYK03895.1 NDR1/HIN1-Like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 8.3e-14
Identity = 47/67 (70.15%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 1   MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60
           MKV  ESSGGE++ E VDSLKA VK K GL LEIKV+TKV+V M WLKM KVGLR HCD 
Sbjct: 168 MKVRVESSGGEIEGESVDSLKAAVKSKAGLPLEIKVETKVKVKMGWLKMPKVGLRAHCDG 227

Query: 61  IMMVVST 68
           I  VV T
Sbjct: 228 ITAVVPT 234

[Close]
BLAST of CsaV3_4G029390 vs. NCBI nr
Match: XP_011659643.1 (NDR1/HIN1-like protein 6 [Cucumis sativus] >KGN45526.1 hypothetical protein Csa_015539 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 3.5e-12
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 0 

Query: 1   MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60
           MKVT ESSGGE++ E VDSLKA VK K GL LE++++TKV+V M WLKM +VGLR HC+ 
Sbjct: 168 MKVTVESSGGEIEGESVDSLKAAVKSKSGLPLEVEMETKVKVKMGWLKMPRVGLRVHCEG 227

Query: 61  IMMVVST 68
           I  VV T
Sbjct: 228 ITGVVPT 234

[Close]
BLAST of CsaV3_4G029390 vs. ExPASy TrEMBL
Match: A0A0A0L0V9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G427260 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.4e-27
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60
          MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE
Sbjct: 1  MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60

Query: 61 IMMVVSTRL 70
          IMMVVSTR+
Sbjct: 61 IMMVVSTRV 69

[Close]
BLAST of CsaV3_4G029390 vs. ExPASy TrEMBL
Match: E5GCB2 (Chaperonin-60 kDa protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.1e-15
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 0 

Query: 1   MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60
           MKVT ESSGGE++ E VDSLKA VK K GL LEIKV+TKV+V M WLKM KVGLR HCD 
Sbjct: 168 MKVTVESSGGEIEGESVDSLKAAVKSKAGLPLEIKVETKVKVKMGWLKMPKVGLRAHCDG 227

Query: 61  IMMVVST 68
           I  VV T
Sbjct: 228 ITAVVPT 234

[Close]
BLAST of CsaV3_4G029390 vs. ExPASy TrEMBL
Match: A0A1S3CHA5 (NDR1/HIN1-Like protein 3 OS=Cucumis melo OX=3656 GN=LOC103500725 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.1e-15
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 0 

Query: 1   MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60
           MKVT ESSGGE++ E VDSLKA VK K GL LEIKV+TKV+V M WLKM KVGLR HCD 
Sbjct: 168 MKVTVESSGGEIEGESVDSLKAAVKSKAGLPLEIKVETKVKVKMGWLKMPKVGLRAHCDG 227

Query: 61  IMMVVST 68
           I  VV T
Sbjct: 228 ITAVVPT 234

[Close]
BLAST of CsaV3_4G029390 vs. ExPASy TrEMBL
Match: A0A5A7UWE0 (NDR1/HIN1-Like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00900 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.0e-14
Identity = 47/67 (70.15%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 1   MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60
           MKV  ESSGGE++ E VDSLKA VK K GL LEIKV+TKV+V M WLKM KVGLR HCD 
Sbjct: 168 MKVRVESSGGEIEGESVDSLKAAVKSKAGLPLEIKVETKVKVKMGWLKMPKVGLRAHCDG 227

Query: 61  IMMVVST 68
           I  VV T
Sbjct: 228 ITAVVPT 234

[Close]
BLAST of CsaV3_4G029390 vs. ExPASy TrEMBL
Match: A0A0A0KCP8 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G451320 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 0 

Query: 1   MKVTDESSGGEVDDELVDSLKAIVKRKVGLALEIKVDTKVQVNMRWLKMSKVGLRKHCDE 60
           MKVT ESSGGE++ E VDSLKA VK K GL LE++++TKV+V M WLKM +VGLR HC+ 
Sbjct: 168 MKVTVESSGGEIEGESVDSLKAAVKSKSGLPLEVEMETKVKVKMGWLKMPRVGLRVHCEG 227

Query: 61  IMMVVST 68
           I  VV T
Sbjct: 228 ITGVVPT 234

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649666.11.1e-50100.00hypothetical protein Csa_012678 [Cucumis sativus][more]
XP_008462352.11.7e-1471.64PREDICTED: NDR1/HIN1-Like protein 3 [Cucumis melo][more]
ADN34111.11.7e-1471.64chaperonin-60 kDa protein [Cucumis melo subsp. melo][more]
KAA0059430.18.3e-1470.15NDR1/HIN1-Like protein 3 [Cucumis melo var. makuwa] >TYK03895.1 NDR1/HIN1-Like p... [more]
XP_011659643.13.5e-1264.18NDR1/HIN1-like protein 6 [Cucumis sativus] >KGN45526.1 hypothetical protein Csa_... [more]
BLAST of CsaV3_4G029390 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0V92.4e-2798.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G427260 PE=4 SV=1[more]
E5GCB28.1e-1571.64Chaperonin-60 kDa protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
A0A1S3CHA58.1e-1571.64NDR1/HIN1-Like protein 3 OS=Cucumis melo OX=3656 GN=LOC103500725 PE=4 SV=1[more]
A0A5A7UWE04.0e-1470.15NDR1/HIN1-Like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A0A0KCP81.7e-1264.18LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G451320 PE=4 ... [more]
BLAST of CsaV3_4G029390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31234:SF36CHAPERONIN CPN60-LIKE PROTEINcoord: 1..65
NoneNo IPR availablePANTHERPTHR31234LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILYcoord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029390.1CsaV3_4G029390.1mRNA