CsaV3_4G029270 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G029270
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 18758485 .. 18759888 (+)
RNA-Seq Expression	CsaV3_4G029270
Synteny	CsaV3_4G029270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATACCAAAGAAATTAAGCATCAATTGTACATAATTAATCTGAATATCAGAGCTAGAGTCCAAACATATATCAAATTAAGTTTTGTTTTTTGTTAATTATAAAAATGAAGAAGTTGCAGCTTCTTGATCTCTTCTTTTTTGTTTCTATTGTTTCCATCGTCCTTTTGGTTTCTCAAGAAGTTGATGGAAGGAAGTCTTTACTCCAAAAAGAAGGTAGAGATGATTTTAATAAGCTTGTCAAACAAAGTACTACTTTAGATGCAGATTTTCATGGTGAAATGGTGGGTCGTAATCAAAAGAAAAAATTACCAACTGATTTGGAAGATAATCCTGAGGATCAAAAGGGCGAAAATTCTGAAGCTGATGAAAAAGGATCAGAGGAAGAAGACGTTCCTGGTGAGGAAGAAGGAGAATATGGAGATCTTGGGGATGTTGGAGACCTTGGAGATTGTGGAGGAGACGAATCTGGAGGTCCTGGAGGAGATTTTGTATATCCTAATAATTGTGGAGGAGAATTTGGAGATGATGATGGAGGAGCTTTGGAAGGAGATGATGGAGAAGGTCCTGGATCAGAAGAATCTGGGGAAGCACCTGAAGATCAGGATGGAGGAGAATCTGGAGAAGAGGTTAGTAGGGACAAGAATGGAGAAGAATATTCTAAAGAAAAGGCACCTGGAGACAATTAAGTGAACATTCTAAAGATTGTAAATGATATGATGGAGATAAATGAGTGATGACATGCATAAATATAATAACAATAATAGCTAGTGTACGTTGTAGAGTATAATAAAGAAGACAAGAATAAAAAGTATATTGTTGGATGAAAACAAAAACAAAAACAAATTCTAGTGTTTAAATTCATAGGAATATATGGTATCGAATTAAAATTATATGTATGCAATTAATAAAAGCTAGTAAGATAAATATATAAGAGGCATTATGATATAGTGTTTAAAGTTTGATTTTGAGTCATACATTTGATCTCCAAGCTAAGGAATATATGTGCATGTGTATTATACACAACTTACCTAAAATAAGGGCTTTTTAATTCTTTCTTTTTTTCTTCACACAATAAATTAGTTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCCTTTTTAACTTAAATGAGCTTTAGATTTTTTTTCTTTATCAAATTGTATTAAATTATGGTTAATTATATTATAATAAATTCCTATATATCTTTTTTTTTTTTCATGTATTGGAGCTAAAACATATTAGAAAAATCAAACTTCTAAGGTTGAAATTAATAACACAAACACTATCTCAATTCAGTTATAATCATGTTTGGCTTCCATAAATAATTTTATATAAAATTTAATTGTCCATTTAAACTTTAATGATTTTATTAAACTATCTTTTTAAGTGTGAAGGTTTCTAAACC

mRNA sequence

ATGAAGAAGTTGCAGCTTCTTGATCTCTTCTTTTTTGTTTCTATTGTTTCCATCGTCCTTTTGGTTTCTCAAGAAGTTGATGGAAGGAAGTCTTTACTCCAAAAAGAAGGTAGAGATGATTTTAATAAGCTTGTCAAACAAAGTACTACTTTAGATGCAGATTTTCATGGTGAAATGGTGGGTCGTAATCAAAAGAAAAAATTACCAACTGATTTGGAAGATAATCCTGAGGATCAAAAGGGCGAAAATTCTGAAGCTGATGAAAAAGGATCAGAGGAAGAAGACGTTCCTGGTGAGGAAGAAGGAGAATATGGAGATCTTGGGGATGTTGGAGACCTTGGAGATTGTGGAGGAGACGAATCTGGAGGTCCTGGAGGAGATTTTGTATATCCTAATAATTGTGGAGGAGAATTTGGAGATGATGATGGAGGAGCTTTGGAAGGAGATGATGGAGAAGGTCCTGGATCAGAAGAATCTGGGGAAGCACCTGAAGATCAGGATGGAGGAGAATCTGGAGAAGAGGTTAGTAGGGACAAGAATGGAGAAGAATATTCTAAAGAAAAGGCACCTGGAGACAATTAA

Coding sequence (CDS)

ATGAAGAAGTTGCAGCTTCTTGATCTCTTCTTTTTTGTTTCTATTGTTTCCATCGTCCTTTTGGTTTCTCAAGAAGTTGATGGAAGGAAGTCTTTACTCCAAAAAGAAGGTAGAGATGATTTTAATAAGCTTGTCAAACAAAGTACTACTTTAGATGCAGATTTTCATGGTGAAATGGTGGGTCGTAATCAAAAGAAAAAATTACCAACTGATTTGGAAGATAATCCTGAGGATCAAAAGGGCGAAAATTCTGAAGCTGATGAAAAAGGATCAGAGGAAGAAGACGTTCCTGGTGAGGAAGAAGGAGAATATGGAGATCTTGGGGATGTTGGAGACCTTGGAGATTGTGGAGGAGACGAATCTGGAGGTCCTGGAGGAGATTTTGTATATCCTAATAATTGTGGAGGAGAATTTGGAGATGATGATGGAGGAGCTTTGGAAGGAGATGATGGAGAAGGTCCTGGATCAGAAGAATCTGGGGAAGCACCTGAAGATCAGGATGGAGGAGAATCTGGAGAAGAGGTTAGTAGGGACAAGAATGGAGAAGAATATTCTAAAGAAAAGGCACCTGGAGACAATTAA

Protein sequence

MKKLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMVGRNQKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDLGDVGDLGDCGGDESGGPGGDFVYPNNCGGEFGDDDGGALEGDDGEGPGSEESGEAPEDQDGGESGEEVSRDKNGEEYSKEKAPGDN*

Homology

[Close]

BLAST of CsaV3_4G029270 vs. NCBI nr
Match: KGN54678.1 (hypothetical protein Csa_012366 [Cucumis sativus])

HSP 1 Score: 355.5 bits (911), Expect = 2.9e-94
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MKKLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMV 60
           MKKLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMV
Sbjct: 1   MKKLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMV 60

Query: 61  GRNQKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDLGDVGDLGDCGGDE 120
           GRNQKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDLGDVGDLGDCGGDE
Sbjct: 61  GRNQKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDLGDVGDLGDCGGDE 120

Query: 121 SGGPGGDFVYPNNCGGEFGDDDGGALEGDDGEGPGSEESGEAPEDQDGGESGEEVSRDKN 180
           SGGPGGDFVYPNNCGGEFGDDDGGALEGDDGEGPGSEESGEAPEDQDGGESGEEVSRDKN
Sbjct: 121 SGGPGGDFVYPNNCGGEFGDDDGGALEGDDGEGPGSEESGEAPEDQDGGESGEEVSRDKN 180

Query: 181 GEEYSKEKAPGDN 194
           GEEYSKEKAPGDN
Sbjct: 181 GEEYSKEKAPGDN 193

[Close]

BLAST of CsaV3_4G029270 vs. NCBI nr
Match: TYK09628.1 (hypothetical protein E5676_scaffold447G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 4.5e-55
Identity = 150/204 (73.53%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 1   MKKLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMV 60
           MKKLQLL LFFFVSI   +LLVS +VDGRKSLLQKEGRDD NKLV+QSTTLDADFHGEMV
Sbjct: 1   MKKLQLL-LFFFVSITVSILLVSPKVDGRKSLLQKEGRDDSNKLVEQSTTLDADFHGEMV 60

Query: 61  GRNQKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDLGD----------- 120
           G NQKKKLPTDLEDNPEDQKGENSE DEKGS EEDVPG+EEGE  + GD           
Sbjct: 61  GNNQKKKLPTDLEDNPEDQKGENSE-DEKGS-EEDVPGDEEGESEEAGDDGGESGSTEGE 120

Query: 121 VGDLGDCGGDESGGPGGDFVYPNNCGGEFGDDDGGALEGDDGEGPGSEESGEAPEDQDGG 180
            GDLGDC G+ESGG       P +CG EFGDDDGGA EGD+GE PG EESGE PE Q GG
Sbjct: 121 YGDLGDC-GEESGG-------PKDCGAEFGDDDGGAFEGDEGEAPG-EESGEVPEYQGGG 180

Query: 181 ESGEEVSRDKNGEEYSKEKAPGDN 194
            SGEEVSRD NGE+ S+EK PGDN
Sbjct: 181 GSGEEVSRDNNGED-SEEKVPGDN 191

[Close]

BLAST of CsaV3_4G029270 vs. NCBI nr
Match: XP_038882385.1 (spore wall protein 2-like [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 7.5e-10
Identity = 89/185 (48.11%), Postives = 107/185 (57.84%), Query Frame = 0


Query: 3   KLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMVGR 62
           KLQ+L      +I+SI LL S EVDGRKSLLQKE R++  KL KQST LDADFHG+MV  
Sbjct: 2   KLQVL------AILSIFLL-SLEVDGRKSLLQKEDREEDAKLAKQSTILDADFHGKMVAS 61

Query: 63  N-QKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDLGDVGDLGDCGGDES 122
           N Q KK PTDLED   +Q+ E+SE DE    EE +P  +EGEYG     G+ G+   D S
Sbjct: 62  NHQMKKFPTDLED-AGNQEDESSEGDE--GLEEGIPEGDEGEYGRGTPEGESGEVPEDTS 121

Query: 123 GGPGGDFVYPNNCGGEFGDDDGGALEGDDGEGPGSE----ESGEAPEDQDGGESGEEVSR 182
              GGD     +   E GDD G + +GDDG+G G      ES E      GG+ G  V  
Sbjct: 122 NN-GGD-----SEETEPGDDQGES-KGDDGDGDGDRDDEGESREGDLGDYGGDFGGMVHE 169

[Close]

BLAST of CsaV3_4G029270 vs. ExPASy TrEMBL
Match: A0A0A0KYS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420190 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MKKLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMV 60
           MKKLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMV
Sbjct: 1   MKKLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMV 60

Query: 61  GRNQKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDLGDVGDLGDCGGDE 120
           GRNQKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDLGDVGDLGDCGGDE
Sbjct: 61  GRNQKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDLGDVGDLGDCGGDE 120

Query: 121 SGGPGGDFVYPNNCGGEFGDDDGGALEGDDGEGPGSEESGEAPEDQDGGESGEEVSRDKN 180
           SGGPGGDFVYPNNCGGEFGDDDGGALEGDDGEGPGSEESGEAPEDQDGGESGEEVSRDKN
Sbjct: 121 SGGPGGDFVYPNNCGGEFGDDDGGALEGDDGEGPGSEESGEAPEDQDGGESGEEVSRDKN 180

Query: 181 GEEYSKEKAPGDN 194
           GEEYSKEKAPGDN
Sbjct: 181 GEEYSKEKAPGDN 193

[Close]

BLAST of CsaV3_4G029270 vs. ExPASy TrEMBL
Match: A0A5D3CEH4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00230 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 2.2e-55
Identity = 150/204 (73.53%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 1   MKKLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMV 60
           MKKLQLL LFFFVSI   +LLVS +VDGRKSLLQKEGRDD NKLV+QSTTLDADFHGEMV
Sbjct: 1   MKKLQLL-LFFFVSITVSILLVSPKVDGRKSLLQKEGRDDSNKLVEQSTTLDADFHGEMV 60

Query: 61  GRNQKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDLGD----------- 120
           G NQKKKLPTDLEDNPEDQKGENSE DEKGS EEDVPG+EEGE  + GD           
Sbjct: 61  GNNQKKKLPTDLEDNPEDQKGENSE-DEKGS-EEDVPGDEEGESEEAGDDGGESGSTEGE 120

Query: 121 VGDLGDCGGDESGGPGGDFVYPNNCGGEFGDDDGGALEGDDGEGPGSEESGEAPEDQDGG 180
            GDLGDC G+ESGG       P +CG EFGDDDGGA EGD+GE PG EESGE PE Q GG
Sbjct: 121 YGDLGDC-GEESGG-------PKDCGAEFGDDDGGAFEGDEGEAPG-EESGEVPEYQGGG 180

Query: 181 ESGEEVSRDKNGEEYSKEKAPGDN 194
            SGEEVSRD NGE+ S+EK PGDN
Sbjct: 181 GSGEEVSRDNNGED-SEEKVPGDN 191

The following BLAST results are available for this feature:

BLAST of CsaV3_4G029270 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54678.1	2.9e-94	100.00	hypothetical protein Csa_012366 [Cucumis sativus]	[more]
TYK09628.1	4.5e-55	73.53	hypothetical protein E5676_scaffold447G00230 [Cucumis melo var. makuwa]	[more]
XP_038882385.1	7.5e-10	48.11	spore wall protein 2-like [Benincasa hispida]	[more]

BLAST of CsaV3_4G029270 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G029270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYS7	1.4e-94	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420190 PE=4 SV=1	[more]
A0A5D3CEH4	2.2e-55	73.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_4G029270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G029270.1	CsaV3_4G029270.1	mRNA