CsaV3_4G029260 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G029260
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 18751427 .. 18752629 (+)
RNA-Seq Expression	CsaV3_4G029260
Synteny	CsaV3_4G029260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAGATTTAAAACAATATATTATTGTATTTGAGTAACTTATTAGATAATAAAAGTTTTACAAAAAAAATCACCAACTAAAATGCAATTGAGTGACACGTGGACAATTCCCGCTACTGCCAAAACAACGGGACCACTAAAGGTTAAGTTCACATGAAATATGAAGGTACAATTGAGGGCATCTCCGTAATTTCAATCCAAAGATGCTTAAATAGTCTTCTAAATCTAAAATTAAAAAAAGAAAAAGAAAAAGAAAAAAGGAATTTGCATCTCTGCACAGAGAAAAAATGGCAGAGCCTCAAACTCGCGAAAATTTAGCCCAAAATCTATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCCCCGCCGCCGTCGATCCAGATCCTGTCGACCCTCCCCTATCACCACCAGCCGTTGCCGTCCTGGAGGATCCGGATTTGATTCGAGAACCTAAACGCCGAAAGCACTGTCCAACGGCTTTGGAGAATCTTGACGAATTGACGTCCGCCTCCAACTCCAGCTTTGCCTTCACCTTCGACACGAAATTCTGCGGATTCTCAGCAGAGATCACTCCGAAATTTGGATCGTTCAACTCAATCGCACCGGAAATGGAGAGGAATCAAAAGAAAGCAGAGAGGGAAGTGAGAGTAGAGGAAGAAGAAAGCGTACATAAAGTTGAAGAAGAAGAAGAAGAAGAAATTGGAATTGCAGATGCGTTGCTAGAAGCAATTAATGAAGAAGAAGAAAGAAATTGATTGTAATGTTGAAAATTTCTCTTCTCTATCTCTGTGTTTCTCTTTGCGATATGAAATTATTGATGTAGTTGAAAATTAGGGTTTGAATGAAAGGGGGGAAAGGGAATTGAATTGGAATATTGAAGAGGAATTATTGATGAAGATTATTAATGGAATGGATTGAATGAATGTTTTTTGATTGAGTTATTAAAATTAAAATGATGATGATGATGATGATGATTAATATTTAATTTAAGAGTGAATGAATTTGGAGAAAAGTGTTGTTTTAGCATTGGAAAGAGTCAGCCAACCACTAGCTTTTGCCCTTTCACAGCCACACGTGCATTGTTCATTTTTTTATCTTTTATTCTTCAAAATACTTTATGAATTTCTTCTTTACTGCAATCAATTTTACTTCTTTTTCTCCTTCACACTTCCTTTTTCTTCCATCTTTCTATTTTGGTTTAAAT

mRNA sequence

ATGGCAGAGCCTCAAACTCGCGAAAATTTAGCCCAAAATCTATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCCCCGCCGCCGTCGATCCAGATCCTGTCGACCCTCCCCTATCACCACCAGCCGTTGCCGTCCTGGAGGATCCGGATTTGATTCGAGAACCTAAACGCCGAAAGCACTGTCCAACGGCTTTGGAGAATCTTGACGAATTGACGTCCGCCTCCAACTCCAGCTTTGCCTTCACCTTCGACACGAAATTCTGCGGATTCTCAGCAGAGATCACTCCGAAATTTGGATCGTTCAACTCAATCGCACCGGAAATGGAGAGGAATCAAAAGAAAGCAGAGAGGGAAGTGAGAGTAGAGGAAGAAGAAAGCGTACATAAAGTTGAAGAAGAAGAAGAAGAAGAAATTGGAATTGCAGATGCGTTGCTAGAAGCAATTAATGAAGAAGAAGAAAGAAATTGA

Coding sequence (CDS)

ATGGCAGAGCCTCAAACTCGCGAAAATTTAGCCCAAAATCTATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCCCCGCCGCCGTCGATCCAGATCCTGTCGACCCTCCCCTATCACCACCAGCCGTTGCCGTCCTGGAGGATCCGGATTTGATTCGAGAACCTAAACGCCGAAAGCACTGTCCAACGGCTTTGGAGAATCTTGACGAATTGACGTCCGCCTCCAACTCCAGCTTTGCCTTCACCTTCGACACGAAATTCTGCGGATTCTCAGCAGAGATCACTCCGAAATTTGGATCGTTCAACTCAATCGCACCGGAAATGGAGAGGAATCAAAAGAAAGCAGAGAGGGAAGTGAGAGTAGAGGAAGAAGAAAGCGTACATAAAGTTGAAGAAGAAGAAGAAGAAGAAATTGGAATTGCAGATGCGTTGCTAGAAGCAATTAATGAAGAAGAAGAAAGAAATTGA

Protein sequence

MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVRVEEEESVHKVEEEEEEEIGIADALLEAINEEEERN*

Homology

[Close]

BLAST of CsaV3_4G029260 vs. NCBI nr
Match: KGN54677.1 (hypothetical protein Csa_012626 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120

Query: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 156
           VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN
Sbjct: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 155

[Close]

BLAST of CsaV3_4G029260 vs. NCBI nr
Match: KAA0025819.1 (uncharacterized protein E6C27_scaffold34G00730 [Cucumis melo var. makuwa] >TYK09637.1 uncharacterized protein E5676_scaffold447G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 3.8e-57
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSP AVDPDPVDPPLSPPAVA L+DPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAPLQDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKK EREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKEEREVR 120

Query: 121 VEEEESV 128
           VEEEE++
Sbjct: 121 VEEEETM 127

[Close]

BLAST of CsaV3_4G029260 vs. NCBI nr
Match: KAG6595438.1 (hypothetical protein SDJN03_11991, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027436.1 hypothetical protein SDJN02_11449, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 1.7e-41
Identity = 114/176 (64.77%), Postives = 126/176 (71.59%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV------------LED 60
           MAEPQTRE  AQN SLS LSRSSF   A D DP D PL+PPAVAV            +ED
Sbjct: 1   MAEPQTRETFAQNPSLSILSRSSF--VAADSDPADHPLAPPAVAVTVTAASDSSDVAIED 60

Query: 61  PDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEM 120
           PDL+REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIA E 
Sbjct: 61  PDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHET 120

Query: 121 ERNQKKAEREVRV----------EEEESVHKVE-EEEEEEIGIADALLEAINEEEE 154
           E  +KK + +  V          EEEE +  V+ E++E+EI + DALLEAI E  E
Sbjct: 121 ETKKKKKKEQRSVLDLASGVRGDEEEEKLDSVQREQDEQEIKVTDALLEAIGEGRE 174

[Close]

BLAST of CsaV3_4G029260 vs. NCBI nr
Match: KAG6604296.1 (hypothetical protein SDJN03_04905, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034454.1 hypothetical protein SDJN02_04183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-40
Identity = 114/176 (64.77%), Postives = 125/176 (71.02%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV----------LEDPD 60
           MAEPQTREN AQN SLSPLSRSSFS  A DPDP +  L P  +AV          +EDPD
Sbjct: 1   MAEPQTRENFAQNPSLSPLSRSSFS--AADPDPGERSLVPTTLAVSAAADFSDVGIEDPD 60

Query: 61  LIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMER 120
           LIREPKRRKHCP+ALENLDELTSASNSSF FTFDTKFCG SAEITPKFGSFNSI  EME 
Sbjct: 61  LIREPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEME- 120

Query: 121 NQKKAEREVRV------------EEEESVHK------VEEEEEEEIGIADALLEAI 149
           + KK ++E R+            E EESV++       EEEEEEE  +ADALLEAI
Sbjct: 121 STKKEKKEQRLVLDSASKTRGDEEREESVNRGTEEEEEEEEEEEEKEVADALLEAI 173

[Close]

BLAST of CsaV3_4G029260 vs. NCBI nr
Match: OIT38761.1 (hypothetical protein A4A49_21018 [Nicotiana attenuata])

HSP 1 Score: 82.0 bits (201), Expect = 4.9e-12
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPL-SPPAVAVLEDPDLIREPKRRK 60
           M EP+T ++ A N S+        +P  VD  P      S       EDPD +R+PKRRK
Sbjct: 1   MEEPKTDQSSAANCSIP-------APHTVDDQPPQAATESCEEKPDKEDPDSLRQPKRRK 60

Query: 61  HCPTALENLDELTSASNSSFAFTFDTKFCGFSA-EITPKFGSFNSIAPE--MERNQKKAE 120
           +CPTAL+  D + SA+N  F+F+FD+KF G S  E+TPKFGSFN + P+    ++ K  E
Sbjct: 61  NCPTALDKFDSVNSATNLGFSFSFDSKFSGCSTPEVTPKFGSFNRVKPKPVSSKDPKSEE 120

Query: 121 REVRVEEEESVHKVEEE 134
           RE++ ++EE    +E++
Sbjct: 121 RELKEDDEERDDVIEKK 130

[Close]

BLAST of CsaV3_4G029260 vs. ExPASy TrEMBL
Match: A0A0A0L245 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.3e-74
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120

Query: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 156
           VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN
Sbjct: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 155

[Close]

BLAST of CsaV3_4G029260 vs. ExPASy TrEMBL
Match: A0A5D3CCB2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00340 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.9e-57
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSP AVDPDPVDPPLSPPAVA L+DPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAPLQDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKK EREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKEEREVR 120

Query: 121 VEEEESV 128
           VEEEE++
Sbjct: 121 VEEEETM 127

[Close]

BLAST of CsaV3_4G029260 vs. ExPASy TrEMBL
Match: A0A314LAG3 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_21018 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.4e-12
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPL-SPPAVAVLEDPDLIREPKRRK 60
           M EP+T ++ A N S+        +P  VD  P      S       EDPD +R+PKRRK
Sbjct: 1   MEEPKTDQSSAANCSIP-------APHTVDDQPPQAATESCEEKPDKEDPDSLRQPKRRK 60

Query: 61  HCPTALENLDELTSASNSSFAFTFDTKFCGFSA-EITPKFGSFNSIAPE--MERNQKKAE 120
           +CPTAL+  D + SA+N  F+F+FD+KF G S  E+TPKFGSFN + P+    ++ K  E
Sbjct: 61  NCPTALDKFDSVNSATNLGFSFSFDSKFSGCSTPEVTPKFGSFNRVKPKPVSSKDPKSEE 120

Query: 121 REVRVEEEESVHKVEEE 134
           RE++ ++EE    +E++
Sbjct: 121 RELKEDDEERDDVIEKK 130

[Close]

BLAST of CsaV3_4G029260 vs. ExPASy TrEMBL
Match: A0A1S4BGV3 (uncharacterized protein LOC107808130 OS=Nicotiana tabacum OX=4097 GN=LOC107808130 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.0e-12
Identity = 56/133 (42.11%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 21  RSSFSPAA----VDPDPVDPPLSPPAVAV--------LEDPDLIREPKRRKHCPTALENL 80
           ++  SPAA      PD VD P  PP  A          EDPD +R+PKRRK+CPTAL+  
Sbjct: 5   KADHSPAANCSTPAPDTVDDP--PPQAAAESCEEKPDKEDPDSLRQPKRRKNCPTALDKF 64

Query: 81  DELTSASNSSFAFTFDTKFCGFSA-EITPKFGSFNSIAPE--MERNQKKAEREVRVEEEE 139
           D + SA+N  F+F+FD+KF G S  E+TPKFGSFN + P+    ++ K  ERE++ ++E+
Sbjct: 65  DSVNSATNLGFSFSFDSKFSGCSTPEVTPKFGSFNRVKPKTVSSKDPKSEERELKEDDED 124

[Close]

BLAST of CsaV3_4G029260 vs. ExPASy TrEMBL
Match: A0A3Q7JFM8 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101250353 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 26  PAAVDPDPVDPPLSPPAVA-------VLEDPDLIREPKRRKHCPTALENLDELTSASNSS 85
           PA  + +  D P SPP  A        +EDPD+IR+ KRRK+CP+AL+  D + S SN  
Sbjct: 17  PAPSNSNSGDDP-SPPTTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSVNSGSNFG 76

Query: 86  FAFTFDTKFCGFSA-EITPKFGSFNSIAPEMERNQKKAEREVRVEEEESVHKVEEEEEEE 138
           F+F+FD+KF G S  E+TPKFGSFN + P   ++ K          EE+V +VE+E+EEE
Sbjct: 77  FSFSFDSKFSGCSTPEVTPKFGSFNRVKPGSTKDPK---------SEETVLEVEDEDEEE 126

The following BLAST results are available for this feature:

BLAST of CsaV3_4G029260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54677.1	1.3e-73	100.00	hypothetical protein Csa_012626 [Cucumis sativus]	[more]
KAA0025819.1	3.8e-57	95.28	uncharacterized protein E6C27_scaffold34G00730 [Cucumis melo var. makuwa] >TYK09...	[more]
KAG6595438.1	1.7e-41	64.77	hypothetical protein SDJN03_11991, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604296.1	7.3e-40	64.77	hypothetical protein SDJN03_04905, partial [Cucurbita argyrosperma subsp. sorori...	[more]
OIT38761.1	4.9e-12	40.88	hypothetical protein A4A49_21018 [Nicotiana attenuata]	[more]

BLAST of CsaV3_4G029260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G029260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L245	6.3e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1	[more]
A0A5D3CCB2	1.9e-57	95.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A314LAG3	2.4e-12	40.88	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_21018 PE=4 SV=1	[more]
A0A1S4BGV3	9.0e-12	42.11	uncharacterized protein LOC107808130 OS=Nicotiana tabacum OX=4097 GN=LOC10780813...	[more]
A0A3Q7JFM8	1.5e-11	45.00	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101250353 PE=4 SV=1	[more]

BLAST of CsaV3_4G029260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 131..151
None	No IPR available	COILS	Coil	Coil	coord: 105..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G029260.1	CsaV3_4G029260.1	mRNA