CsaV3_4G029240 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029240
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 18732990 .. 18735017 (+)
RNA-Seq ExpressionCsaV3_4G029240
SyntenyCsaV3_4G029240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGGATGATTGTGGCTTGGTAAGAGGTTAGAGGAAGAGGGAAAGAAGAATTAATTACAAACCTGAGGTCCCAAGTTTGAGTTGTAGTTGCTGTTGGCCGTCGTAGGGTGTTGAGTCATGAGGGAGAACCTCAAGTCGTGCGGGAGATAAATGAAGAGAAAAATGGAACATTAGGGGTTTTTTTATGTGGGGGTAATTTTGACATTGCAACTCATTTTTATTACGATTTTTTTAAGGAAAAAAATTAACTTTATGAAGGTAAATTTAATAAATAATATAATATTCCAGTAAAAAAAAAGGAAAACGGAAAAGTTGGGTAAATGAAAGCAAAACAAAAACAGGGTTTTGTCTCTGAACAGCGGATGACGCGGCCATGGAAGTTAGTTATAGACAGTTTTAGTTTTAGCAAAAATAACCTGTCCCAATTCAGCCAAATTTGGAAAATGCCCAAAAAAAGAAACAGCGTGGGGAAATTTTGATTGATAAAGGGGTTGGGGTTGTAGGATTTTTGGGCACTGCATTGGGGTTGAGGAATTTCTTCTTCTTTTATACTGGTCAAAGGGGAGCGGGAGGGCTCTCTTTCTGAATTTTGCCGGTGACCCAACTGGTTTCTCTCGCGCTCCCATTCTCCTGTTTGTCTCCCTGAATGCCTTAACCAGTGTTCAGGGTAATTTCACTCTTTTACTTCCCACCATTTTCATTTCCTGCTCAATCTGCACCAATCCCATCAATGATTAATACTTCTCACTTTAATTTTCTCTTTTTCGTTTTTGTTTGCTTATTGGGTGGTTAGATCGGAGAAGGACTTGTTGTTCTGTTTACCATCAATCTCTTGAATGATTAATGTTTGGTTATTGGGTGCTTAGATTGAAGAAAGGTTTTTTGTTCTGTTTGGCATGAATCCCATGAATGGTTAATAGTTATGGTTTTGATTTTCTCTTTTTGATTTCTGTATGCTTATTCGGTTCTTAGATGGAAGAACAGTTTACTTTTTCTGTTTGGTTCTTTCTAGGGAAAATGAGTGTAATCGACGGTTGGATCGTTTGGAATAGTGAAATGTAGATTTTGGAAGTCATATGATGGTTTTTATTTTTTTGTGTATTCATTAGTGTATCTCTCTTTTGGGTTTGTAGGTAGATGGAAGTACAGTTTATTTTCTTTTTGTTTCCCGGAAAAATGTGTATGAGTCCGTTGTTTTTTTTTATTATTATTTTGGTTTCAGATCATTCTGGTGACTTAATTGCAAAGGGGCGTGGGATTAATAGGTTTGTTAATATCACTCAAGAGTGTTTTTCTTGATTTTCAGTACATGATATTTAGATTTTATGATTCTAACTTCTCTACAGGTTGTGATGGATTCCAGAAAAATGGGTGGAAGTCGGCATGCGTTTGTTGTAAATCATGCATGAAGTACAAAGCTGCATCTGATATTTTACAACTTAATCTGACCTTAATGGGTAAGAAAGATTAATAATTGGCCACCATATTGTTTCTTGCTGGCATGGTTTTTCAAATTTTCTTGTTTTAATCAAATAAATATTGTTTTATGATATTGAACTTTATGAAGTCGAGGCATTTTCTGTGGAAAATTACTTCTGCAAATGTCCATTTTCTGAGGACTAAGGATCTGCAAATGTTGTTCGATGTTTGAGCATCTTCTAATTAACAAATATGGAGATATATTTCATTAAATGTACATTGATATATACCTCGGTTATTTGATTGCATTGAAGCACTCATAAAAATTTGTTTGAAAATAGTATGAATTGGGAATTTGGAAAGCAGTAATTTATGACAAAAATAGATTCATTTAACATGTAGTTTCATTCAATGATTTCTGTAAGTCCATCAAATAGATATACTTACAAAATTATACTTTTCTGCACACACTTTTATTCTTTTATTGGATTCTTGTCACTAGTACTTCAATCTGAATGCACTTCTTGGAAATGAGAAATGAACTGATTCGAGATTGTCACTTTTGATTGGGCTGAGTGATGTTTCCAGGAAAGGCAGATCCTTAG

mRNA sequence

ATGGTGAGGATGATTGTGGCTTGGATTTTTGGGCACTGCATTGGGGTTGAGGAATTTCTTCTTCTTTTATACTGGTCAAAGGGGAGCGGGAGGGCTCTCTTTCTGAATTTTGCCGGTGACCCAACTGGTTTCTCTCGCGCTCCCATTCTCCTGTTTGTCTCCCTGAATGCCTTAACCAGTGTTCAGGATCATTCTGGTGACTTAATTGCAAAGGGGCGTGGGATTAATAGATTTTATGATTCTAACTTCTCTACAGGTTGTGATGGATTCCAGAAAAATGGGTGGAAGTCGGCATGCGTTTGTTGTAAATCATGCATGAAGTACAAAGCTGCATCTGATATTTTACAACTTAATCTGACCTTAATGGGAAAGGCAGATCCTTAG

Coding sequence (CDS)

ATGGTGAGGATGATTGTGGCTTGGATTTTTGGGCACTGCATTGGGGTTGAGGAATTTCTTCTTCTTTTATACTGGTCAAAGGGGAGCGGGAGGGCTCTCTTTCTGAATTTTGCCGGTGACCCAACTGGTTTCTCTCGCGCTCCCATTCTCCTGTTTGTCTCCCTGAATGCCTTAACCAGTGTTCAGGATCATTCTGGTGACTTAATTGCAAAGGGGCGTGGGATTAATAGATTTTATGATTCTAACTTCTCTACAGGTTGTGATGGATTCCAGAAAAATGGGTGGAAGTCGGCATGCGTTTGTTGTAAATCATGCATGAAGTACAAAGCTGCATCTGATATTTTACAACTTAATCTGACCTTAATGGGAAAGGCAGATCCTTAG

Protein sequence

MVRMIVAWIFGHCIGVEEFLLLLYWSKGSGRALFLNFAGDPTGFSRAPILLFVSLNALTSVQDHSGDLIAKGRGINRFYDSNFSTGCDGFQKNGWKSACVCCKSCMKYKAASDILQLNLTLMGKADP*
Homology
[Close]
BLAST of CsaV3_4G029240 vs. NCBI nr
Match: KAE8649662.1 (hypothetical protein Csa_012315 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 1.5e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MVRMIVAWIFGHCIGVEEFLLLLYWSKGSGRALFLNFAGDPTGFSRAPILLFVSLNALTS 60
           MVRMIVAWIFGHCIGVEEFLLLLYWSKGSGRALFLNFAGDPTGFSRAPILLFVSLNALTS
Sbjct: 1   MVRMIVAWIFGHCIGVEEFLLLLYWSKGSGRALFLNFAGDPTGFSRAPILLFVSLNALTS 60

Query: 61  VQDHSGDLIAKGRGINRFYDSNFSTGCDGFQKNGWKSACVCCKSCMKYKAASDILQLNLT 120
           VQDHSGDLIAKGRGINRFYDSNFSTGCDGFQKNGWKSACVCCKSCMKYKAASDILQLNLT
Sbjct: 61  VQDHSGDLIAKGRGINRFYDSNFSTGCDGFQKNGWKSACVCCKSCMKYKAASDILQLNLT 120

Query: 121 LMGKADP 128
           LMGKADP
Sbjct: 121 LMGKADP 127

[Close]
BLAST of CsaV3_4G029240 vs. NCBI nr
Match: KAG6595436.1 (hypothetical protein SDJN03_11989, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 3.5e-16
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 28 GSGRALFLNFAGDPTGFSRAPILLFVSLNALTSVQDHSGDLIAKGRGINR 78
          GSGRALFLNFAGDPTGFSRAPILLFVSLNAL SVQ+HSGDL AKGRGINR
Sbjct: 25 GSGRALFLNFAGDPTGFSRAPILLFVSLNALISVQEHSGDLNAKGRGINR 74

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029240 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649662.11.5e-67100.00hypothetical protein Csa_012315 [Cucumis sativus][more]
KAG6595436.13.5e-1694.00hypothetical protein SDJN03_11989, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CsaV3_4G029240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029240 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029240.1CsaV3_4G029240.1mRNA