CsaV3_4G029210 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G029210
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 18702885 .. 18703083 (+)
RNA-Seq Expression	CsaV3_4G029210
Synteny	CsaV3_4G029210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAGTCTCAAGATCAAGGGAGTGAACTCAAAAAATACTGAGGAGAAGCCGAAAAGTTCATGGCAAGTCCTTTGTAGGCCTTTGGCTCAGGCTTACCACATTTATGGTAATCCAAATGACATATTGTGATCATATTGTTTTTCTTTAAGGAGGTGGTGCTCGGCACTTAAGAAGCCACTTGGGCCTCTTGGCTTAA

mRNA sequence

ATGACCAGTCTCAAGATCAAGGGAGTGAACTCAAAAAATACTGAGGAGAAGCCGAAAAGTTCATGGCAAGTCCTTTGTAGGCCTTTGGCTCAGGCTTACCACATTTATGGAGGTGGTGCTCGGCACTTAAGAAGCCACTTGGGCCTCTTGGCTTAA

Coding sequence (CDS)

ATGACCAGTCTCAAGATCAAGGGAGTGAACTCAAAAAATACTGAGGAGAAGCCGAAAAGTTCATGGCAAGTCCTTTGTAGGCCTTTGGCTCAGGCTTACCACATTTATGGAGGTGGTGCTCGGCACTTAAGAAGCCACTTGGGCCTCTTGGCTTAA

Protein sequence

MTSLKIKGVNSKNTEEKPKSSWQVLCRPLAQAYHIYGGGARHLRSHLGLLA*

Homology

[Close]

BLAST of CsaV3_4G029210 vs. NCBI nr
Match: KGN54671.1 (hypothetical protein Csa_012530 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.6e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MTSLKIKGVNSKNTEEKPKSSWQVLCRPLAQAYHIYGGGARHLRSHLGLLA 52
          MTSLKIKGVNSKNTEEKPKSSWQVLCRPLAQAYHIYGGGARHLRSHLGLLA
Sbjct: 1  MTSLKIKGVNSKNTEEKPKSSWQVLCRPLAQAYHIYGGGARHLRSHLGLLA 51

[Close]

BLAST of CsaV3_4G029210 vs. ExPASy TrEMBL
Match: A0A0A0L3F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420120 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.9e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MTSLKIKGVNSKNTEEKPKSSWQVLCRPLAQAYHIYGGGARHLRSHLGLLA 52
          MTSLKIKGVNSKNTEEKPKSSWQVLCRPLAQAYHIYGGGARHLRSHLGLLA
Sbjct: 1  MTSLKIKGVNSKNTEEKPKSSWQVLCRPLAQAYHIYGGGARHLRSHLGLLA 51

The following BLAST results are available for this feature:

BLAST of CsaV3_4G029210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54671.1	1.6e-20	100.00	hypothetical protein Csa_012530 [Cucumis sativus]	[more]

BLAST of CsaV3_4G029210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G029210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3F7	7.9e-21	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420120 PE=4 SV=1	[more]

BLAST of CsaV3_4G029210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G029210.1	CsaV3_4G029210.1	mRNA