CsaV3_4G029150 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029150
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description50S ribosomal protein 5, chloroplastic
Locationchr4: 18668075 .. 18670328 (-)
RNA-Seq ExpressionCsaV3_4G029150
SyntenyCsaV3_4G029150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTCTGAATGTATATTCAAAATGTTATACAAAAGCTTATCCGAAGGTAAGCGAGGGGCTCCCAGTTCACACCATGGCTTCCTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTCTCTACGTCCCCGTCGCCGTCATGTTTTCCTCCGACTTCTGCCATCCCTAGTATGTCTCTCTTCCTCAACTTTCCTTTCCCTTCCTCTGCTCGACGGGATCGAATGAACTTTTTTGTCTAATTCTTATTCCTATCTACATTTCTCTTTCTACTTCATTGTTTGTTGTACGATTTATTCAAATGGGTAATTCCTTTTTTCTCCAACTCGGAAAACTATGTGGTGCTTCAGACAATTTTCTTGCTTCCACTCATTTGTCCGTCAGGCATTTTGTCAAACAGTTGGACTCGATTTTTTAAGCTTCTCTTTTGATGTGCACTAGATCTCGCTCTCGCTTGCCTGAATGTGTTTTTGTTCTGTATCTTGTGTTTTATAGGCTGATTGCTCTCTTTCTTGTTGATTGTCCTCAATTTCACATATACTTTACAAGTTTCCTTGTCTTGAAATACGGTTGAATTTCTTTGAAGAGAGATTGCTTTGAGTGAATTTCATGAATATTAATTTGATTCATATAATATCAAATAGGAGAAATTAACATTATCAGGATCCCTAGCCCCCCACGCTGTGATAGATTACATATTAAAAAACGAACTCAATCAAAAGCCTTTTAAATAGATTACAGTCTATTTATTCTTTGGTTACATTACAACTAAACAAGCTATTTAAACTTGGTTTATATTGATAAAAGAAAGTATTACAAGCTTCTTGGCGAAACTTTTGAAGTTTTTTTACTAACTAATGGTCTATTAAGTGTTTAATACGTCTCTAAACTTTTAATATTGTTTACCGTAGATTTCTAAGTTTTAAACAATATCTAGTAGGTCTTTAAAATATTAGTATTAAACTTTTAACTGTCTTTATTTGGCTCTGAATTTGTATAGAGATCTCATGTATCAGGTTTACAATCTATTAAACACTCTTTTAAATTAAGGGATCTCTTAGACACAATTCGATAAGCTTAGAGACCAAAATAATACATATTCTTGGCTTTCATTGGAATGATTATTTCCTTGCACTTTATGAATCCCAGTCTAATTTCTATTCCTTTATTGTGGTTTCCATTTCAGGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCACTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAACTGACAGTAGTGACGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAGGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGTTTGATAATCTTGAGCTCCTTGAATTCAATTCTTGCAGTTTTCAGTTCTAGAGGTGCCATTTCTCCTTATCGCTTCCAATTTACTGTCTTATTTCTTTATACTTTCAAGGAAATGTACTTGCTTCTTAATATACCTGAAAGGATCCAGTGAGTAATGAAATGTGCAAATTCTTCTTAGTTTTGAACGACTAAATTGTGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAGATTTTTATTGGTAATCTTGCTAAAAAAACCCTTGCACAAAGGCATTGTCTTAGAAACTTAGACTAAGATGAAATTGCACGTCGAGATGAATCCCCCCCAGGGAGGAGTTTGAGCTTGACGTCTGTCTCAATTTGTACTGACTGTGGTTGAATAAAGATGAAAGGTAAGAGTTCTGGCTTTTAATGCAGATTGTCTAGTGAGTGGATTCTATTCTCTGCACTCTTAGAATAGTATGTAGGGACAGGAAGTATCTGCATTAGATGCTTTGTAGGAAGTATGGCACTCATGATAGCAAAACGCTTTCGAATATCTTGTTTTTTAGGATTTAGACCTCAGTTGCAGCTATACTGTAGATAAGCTTTGTACTTTCAATGCGTTTGAGTGAACCCCTCAATAGATGGATAGGGTTCAGAGTTTAGTGTAACCTTTAACCCATTAGAACTACTCATTGTTTTAACAACA

mRNA sequence

ATGGCTTCCTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTCTCTACGTCCCCGTCGCCGTCATGTTTTCCTCCGACTTCTGCCATCCCTAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCACTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAACTGACAGTAGTGACGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAGGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGTTTGA

Coding sequence (CDS)

ATGGCTTCCTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTCTCTACGTCCCCGTCGCCGTCATGTTTTCCTCCGACTTCTGCCATCCCTAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCACTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAACTGACAGTAGTGACGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAGGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGTTTGA

Protein sequence

MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV*
Homology
[Close]
BLAST of CsaV3_4G029150 vs. NCBI nr
Match: XP_004144312.1 (50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypothetical protein Csa_012356 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 5.4e-72
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]
BLAST of CsaV3_4G029150 vs. NCBI nr
Match: XP_008455762.1 (PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-63
Identity = 143/153 (93.46%), Postives = 144/153 (94.12%), Query Frame = 0 

Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FV
Sbjct: 1   MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60

Query: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGE DSS+VQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]
BLAST of CsaV3_4G029150 vs. NCBI nr
Match: XP_038881132.1 (50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881134.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 234.2 bits (596), Expect = 7.6e-58
Identity = 136/158 (86.08%), Postives = 139/158 (87.97%), Query Frame = 0 

Query: 1   MASFLLSSNPLSTSFH---FS--TSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLR 60
           MASFLL SNPLSTS H   FS   SPSPSCFP TSA PS MLLMKPIGFQPKHFNGVRL 
Sbjct: 1   MASFLLCSNPLSTSLHSFPFSPPPSPSPSCFPATSAAPSPMLLMKPIGFQPKHFNGVRLG 60

Query: 61  NHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 120
             SFVEN ASL+VKAASE DA G+TDSS+ QP AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 61  KPSFVENMASLIVKAASEIDAMGDTDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKA 120

Query: 121 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 158

[Close]
BLAST of CsaV3_4G029150 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-55
Identity = 129/156 (82.69%), Postives = 137/156 (87.82%), Query Frame = 0 

Query: 3   SFLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNH 62
           +FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN 
Sbjct: 2   AFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRNV 61

Query: 63  SFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
           SFVENTASL+VKA SE D TGETDS++ QP AEAKKEDVPVDKLPLESKLQERLEQK RM
Sbjct: 62  SFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]
BLAST of CsaV3_4G029150 vs. NCBI nr
Match: XP_023543496.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.4 bits (568), Expect = 1.3e-54
Identity = 128/158 (81.01%), Postives = 135/158 (85.44%), Query Frame = 0 

Query: 3   SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLR 62
           +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLR
Sbjct: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLR 61

Query: 63  NHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122
           N SFVENT S  VKAASE DATGETDS++ +P+AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 62  NPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKA 121

Query: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]
BLAST of CsaV3_4G029150 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.9e-15
Identity = 67/142 (47.18%), Postives = 88/142 (61.97%), Query Frame = 0 

Query: 17  FSTSP---SPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASE 76
           F+T+P   S S FP  +A P S +    IG       G R+      +   + +  A++ 
Sbjct: 9   FTTTPVTSSSSLFPHPTANPISRV---RIGLPTNCLKGFRILTPIVQKPRKNSIFIASAA 68

Query: 77  TDATGETDSSDVQPAAEAKKED--VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV 136
             A  +++ +D    +E+KKE   V VDKLPLESKL+ER E+  +MKLAKKIRL+RKRLV
Sbjct: 69  AGA--DSNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRLKRKRLV 128

Query: 137 QKRHLRKKGRWPPSKMKKLKNV 154
           QKR LRKKG WPPSKMKKL+ V
Sbjct: 129 QKRRLRKKGNWPPSKMKKLEGV 145

[Close]
BLAST of CsaV3_4G029150 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 6.3e-15
Identity = 58/107 (54.21%), Postives = 70/107 (65.42%), Query Frame = 0 

Query: 51  GVRLRNHSFV----ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESK 110
           G RL  H  V      T   +V AA+E  A  + D S V+ A      ++ V  LPLESK
Sbjct: 42  GQRLVAHGPVIAQKRGTVVAMVSAAAEETAGEDGDQSKVEEA------NISVQNLPLESK 101

Query: 111 LQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           LQ +LEQK +MK+AKKIRLRR RL++KR LRK+G WPPSKMKKLKNV
Sbjct: 102 LQLKLEQKIKMKMAKKIRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV 142

[Close]
BLAST of CsaV3_4G029150 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-14
Identity = 71/156 (45.51%), Postives = 90/156 (57.69%), Query Frame = 0 

Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MA    +S P  +S    +S S S    + +  S +L +KP   + K  N V L  +S  
Sbjct: 1   MALLCFNSLPSLSSL---SSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLN 60

Query: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQER---LEQKARM 120
            +   +VVKAA+      E +S +      A    VPVDKLPLESK  +    LE + +M
Sbjct: 61  SSHGRIVVKAAASGVDGAEPESKEEPKTVVAA---VPVDKLPLESKEAKEKLLLELRLKM 120

Query: 121 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 121 KLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]
BLAST of CsaV3_4G029150 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]
BLAST of CsaV3_4G029150 vs. ExPASy TrEMBL
Match: A0A1S3C2X0 (50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.7e-64
Identity = 143/153 (93.46%), Postives = 144/153 (94.12%), Query Frame = 0 

Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FV
Sbjct: 1   MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60

Query: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGE DSS+VQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]
BLAST of CsaV3_4G029150 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.7e-56
Identity = 129/156 (82.69%), Postives = 137/156 (87.82%), Query Frame = 0 

Query: 3   SFLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNH 62
           +FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN 
Sbjct: 2   AFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRNV 61

Query: 63  SFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
           SFVENTASL+VKA SE D TGETDS++ QP AEAKKEDVPVDKLPLESKLQERLEQK RM
Sbjct: 62  SFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]
BLAST of CsaV3_4G029150 vs. ExPASy TrEMBL
Match: A0A6J1GE62 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453134 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.2e-54
Identity = 127/158 (80.38%), Postives = 134/158 (84.81%), Query Frame = 0 

Query: 3   SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLR 62
           +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLR
Sbjct: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLR 61

Query: 63  NHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122
           N SFVENT S +VKAASE DATGETDS++ +P AEAKKEDV VDKLPLESKLQERLEQKA
Sbjct: 62  NPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQKA 121

Query: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]
BLAST of CsaV3_4G029150 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.5e-54
Identity = 125/156 (80.13%), Postives = 134/156 (85.90%), Query Frame = 0 

Query: 3   SFLLSSNPLSTSFHFST-----SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNH 62
           +FLL SNPLS S H ST     SPSPSCFP   +  +SM LMKP GFQPKHFNGVRLRN 
Sbjct: 2   AFLLCSNPLSISLHSSTLSPSPSPSPSCFPGNFSALNSMSLMKPTGFQPKHFNGVRLRNP 61

Query: 63  SFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
           SFVENT S +VKAASE D TGETDS++ +P+AEAKKEDVPVDKLPLESKLQERLEQKARM
Sbjct: 62  SFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKARM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]
BLAST of CsaV3_4G029150 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-15
Identity = 71/156 (45.51%), Postives = 90/156 (57.69%), Query Frame = 0 

Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MA    +S P  +S    +S S S    + +  S +L +KP   + K  N V L  +S  
Sbjct: 1   MALLCFNSLPSLSSL---SSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLN 60

Query: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQER---LEQKARM 120
            +   +VVKAA+      E +S +      A    VPVDKLPLESK  +    LE + +M
Sbjct: 61  SSHGRIVVKAAASGVDGAEPESKEEPKTVVAA---VPVDKLPLESKEAKEKLLLELRLKM 120

Query: 121 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 121 KLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029150 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144312.15.4e-72100.0050S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypot... [more]
XP_008455762.11.6e-6393.46PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo][more]
XP_038881132.17.6e-5886.0850S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S r... [more]
XP_022154476.11.6e-5582.6950S ribosomal protein 5, chloroplastic [Momordica charantia][more]
XP_023543496.11.3e-5481.0150S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_4G029150 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P118914.9e-1547.1850S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV... [more]
P276846.3e-1554.2150S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR... [more]
Q9LER73.1e-1445.5150S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ... [more]
BLAST of CsaV3_4G029150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3F42.6e-72100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1[more]
A0A1S3C2X07.7e-6493.4650S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 P... [more]
A0A6J1DNT97.7e-5682.6950S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A6J1GE623.2e-5480.3850S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1HS415.5e-5480.1350S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN... [more]
BLAST of CsaV3_4G029150 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G56910.12.2e-1545.51plastid-specific 50S ribosomal protein 5 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..153
NoneNo IPR availablePANTHERPTHR34678:SF150S RIBOSOMAL PROTEIN 5, CHLOROPLASTICcoord: 5..153
IPR04030750S ribosomal protein 5, chloroplasticPANTHERPTHR3467850S RIBOSOMAL PROTEIN 5, CHLOROPLASTICcoord: 5..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029150.1CsaV3_4G029150.1mRNA