CsaV3_4G029110 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G029110
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Stromal 70 kDa heat shock-related protein
Location	chr4: 18631896 .. 18632145 (-)
RNA-Seq Expression	CsaV3_4G029110
Synteny	CsaV3_4G029110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTGAGGTTGGAGATGGTGTATTTGAGGTTCTTTCTACTTCAGGCGATACACATTTGGGTGGCAATGATTTTGACAAGGTTGAGTCACTCATTTTTCCTATAACTTCCATGTGTTTCTTTATTTGCAGAAAATGACATTTCTGCTTTATTACTTTCAGAGAATTGTCGGTTGGCTTGCTGAGAGCTTTAAGAGGGATGAAGGAGTAAACCTTTTGAAAGACAAACAGGCGCTGCAACGTCTAACCTAA

mRNA sequence

CTTGAGGTTGGAGATGGTGTATTTGAGGTTCTTTCTACTTCAGGCGATACACATTTGGGTGGCAATGATTTTGACAAGAGAATTGTCGGTTGGCTTGCTGAGAGCTTTAAGAGGGATGAAGGAGTAAACCTTTTGAAAGACAAACAGGCGCTGCAACGTCTAACCTA

Coding sequence (CDS)

CTTGAGGTTGGAGATGGTGTATTTGAGGTTCTTTCTACTTCAGGCGATACACATTTGGGTGGCAATGATTTTGACAAGAGAATTGTCGGTTGGCTTGCTGAGAGCTTTAAGAGGGATGAAGGAGTAAACCTTTTGAAAGACAAACAGGCGCTGCAACGTCTAACCTA

Protein sequence

LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLTX

Homology

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BLAST of CsaV3_4G029110 vs. NCBI nr
Match: KAE8649657.1 (hypothetical protein Csa_023754, partial [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 2.4e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
          LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT
Sbjct: 1  LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 55

[Close]

BLAST of CsaV3_4G029110 vs. NCBI nr
Match: PWA47516.1 (chaperone protein dnaK2 [Artemisia annua])

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKRIV WLAESFKRDEG++LLKDKQALQRLT
Sbjct: 259 LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLT 313

[Close]

BLAST of CsaV3_4G029110 vs. NCBI nr
Match: PWA47517.1 (chaperone protein dnaK2 [Artemisia annua])

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKRIV WLAESFKRDEG++LLKDKQALQRLT
Sbjct: 259 LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLT 313

[Close]

BLAST of CsaV3_4G029110 vs. NCBI nr
Match: KAA0038168.1 (stromal 70 kDa heat shock-related protein [Cucumis melo var. makuwa] >TYK31527.1 stromal 70 kDa heat shock-related protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKRIV WLAESFKRDEG++LLKDKQALQRLT
Sbjct: 97  LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLT 151

[Close]

BLAST of CsaV3_4G029110 vs. NCBI nr
Match: XP_038897254.1 (stromal 70 kDa heat shock-related protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKRIV WLAESFKRDEG++LLKDKQALQRLT
Sbjct: 245 LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLT 299

[Close]

BLAST of CsaV3_4G029110 vs. ExPASy Swiss-Prot
Match: Q08080 (Stromal 70 kDa heat shock-related protein, chloroplastic (Fragment) OS=Spinacia oleracea OX=3562 GN=CHSP70 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-22
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKRIV WLA SFKRDEG++LLKDKQALQRLT
Sbjct: 150 LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASSFKRDEGIDLLKDKQALQRLT 204

[Close]

BLAST of CsaV3_4G029110 vs. ExPASy Swiss-Prot
Match: Q9LTX9 (Heat shock 70 kDa protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HSP70-7 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 9.7e-22
Identity = 47/55 (85.45%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKR+V WLA +FK+DEG++LLKDKQALQRLT
Sbjct: 280 LEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLASTFKKDEGIDLLKDKQALQRLT 334

[Close]

BLAST of CsaV3_4G029110 vs. ExPASy Swiss-Prot
Match: Q02028 (Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum OX=3888 GN=HSP70 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 9.7e-22
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKR+V WLA  FKRDEG++LLKDKQALQRLT
Sbjct: 270 LEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAGDFKRDEGIDLLKDKQALQRLT 324

[Close]

BLAST of CsaV3_4G029110 vs. ExPASy Swiss-Prot
Match: Q9STW6 (Heat shock 70 kDa protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HSP70-6 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-21
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKR+V WLA  FK+DEG++LLKDKQALQRLT
Sbjct: 280 LEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAAEFKKDEGIDLLKDKQALQRLT 334

[Close]

BLAST of CsaV3_4G029110 vs. ExPASy Swiss-Prot
Match: Q8YW74 (Chaperone protein dnaK2 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=dnaK2 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.0e-19
Identity = 44/55 (80.00%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVL+TSGDTHLGG+DFDK+IV +LAE F++DEG++L KDKQALQRLT
Sbjct: 203 LEVGDGVFEVLATSGDTHLGGDDFDKKIVDFLAEQFRKDEGIDLRKDKQALQRLT 257

[Close]

BLAST of CsaV3_4G029110 vs. ExPASy TrEMBL
Match: A0A5D3E5W9 (Stromal 70 kDa heat shock-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00050 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKRIV WLAESFKRDEG++LLKDKQALQRLT
Sbjct: 97  LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLT 151

[Close]

BLAST of CsaV3_4G029110 vs. ExPASy TrEMBL
Match: A0A7N0ZU01 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKRIV WLAESFKRDEG++LLKDKQALQRLT
Sbjct: 267 LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLT 321

[Close]

BLAST of CsaV3_4G029110 vs. ExPASy TrEMBL
Match: A0A2U1LET4 (Chaperone protein dnaK2 OS=Artemisia annua OX=35608 GN=CTI12_AA498570 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKRIV WLAESFKRDEG++LLKDKQALQRLT
Sbjct: 259 LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLT 313

[Close]

BLAST of CsaV3_4G029110 vs. ExPASy TrEMBL
Match: A0A2U1LEU5 (Chaperone protein dnaK2 OS=Artemisia annua OX=35608 GN=CTI12_AA498570 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKRIV WLAESFKRDEG++LLKDKQALQRLT
Sbjct: 259 LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLT 313

[Close]

BLAST of CsaV3_4G029110 vs. ExPASy TrEMBL
Match: A0A5N6N5S0 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_25460 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKRIV WLAESFKRDEG++LLKDKQALQRLT
Sbjct: 260 LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLT 314

[Close]

BLAST of CsaV3_4G029110 vs. TAIR 10
Match: AT5G49910.1 (chloroplast heat shock protein 70-2 )

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-23
Identity = 47/55 (85.45%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKR+V WLA +FK+DEG++LLKDKQALQRLT
Sbjct: 280 LEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLASTFKKDEGIDLLKDKQALQRLT 334

[Close]

BLAST of CsaV3_4G029110 vs. TAIR 10
Match: AT4G24280.1 (chloroplast heat shock protein 70-1 )

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-22
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRLT 56
           LEVGDGVFEVLSTSGDTHLGG+DFDKR+V WLA  FK+DEG++LLKDKQALQRLT
Sbjct: 280 LEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAAEFKKDEGIDLLKDKQALQRLT 334

[Close]

BLAST of CsaV3_4G029110 vs. TAIR 10
Match: AT5G09590.1 (mitochondrial HSO70 2 )

HSP 1 Score: 67.0 bits (162), Expect = 5.5e-12
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRL 55
           LE+ +GVFEV +T+GDT LGG DFD  ++ +L   FK  EG++L KD+ ALQRL
Sbjct: 258 LEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKTTEGIDLAKDRLALQRL 311

[Close]

BLAST of CsaV3_4G029110 vs. TAIR 10
Match: AT4G37910.1 (mitochondrial heat shock protein 70-1 )

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-11
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRL 55
           LE+  GVFEV +T+GDT LGG DFD  ++ +L   FKR + ++L KD  ALQRL
Sbjct: 253 LEISSGVFEVKATNGDTFLGGEDFDNTLLEYLVNEFKRSDNIDLTKDNLALQRL 306

[Close]

BLAST of CsaV3_4G029110 vs. TAIR 10
Match: AT1G09080.1 (Heat shock protein 70 (Hsp 70) family protein )

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-09
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   LEVGDGVFEVLSTSGDTHLGGNDFDKRIVGWLAESFKRDEGVNLLKDKQALQRL 55
           L + +GVFEVLSTSGDTHLGG DFD R++ +  +  K+    ++ KD +AL +L
Sbjct: 255 LTIDNGVFEVLSTSGDTHLGGEDFDHRVMDYFIKLVKKKYNKDISKDHKALGKL 308

The following BLAST results are available for this feature:

BLAST of CsaV3_4G029110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649657.1	2.4e-22	100.00	hypothetical protein Csa_023754, partial [Cucumis sativus]	[more]
PWA47516.1	3.0e-20	92.73	chaperone protein dnaK2 [Artemisia annua]	[more]
PWA47517.1	3.0e-20	92.73	chaperone protein dnaK2 [Artemisia annua]	[more]
KAA0038168.1	3.0e-20	92.73	stromal 70 kDa heat shock-related protein [Cucumis melo var. makuwa] >TYK31527.1...	[more]
XP_038897254.1	3.0e-20	92.73	stromal 70 kDa heat shock-related protein, chloroplastic-like [Benincasa hispida...	[more]

BLAST of CsaV3_4G029110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08080	1.5e-22	90.91	Stromal 70 kDa heat shock-related protein, chloroplastic (Fragment) OS=Spinacia ...	[more]
Q9LTX9	9.7e-22	85.45	Heat shock 70 kDa protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HS...	[more]
Q02028	9.7e-22	87.27	Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum OX=388...	[more]
Q9STW6	1.6e-21	85.45	Heat shock 70 kDa protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HS...	[more]
Q8YW74	2.0e-19	80.00	Chaperone protein dnaK2 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) ...	[more]

BLAST of CsaV3_4G029110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E5W9	1.4e-20	92.73	Stromal 70 kDa heat shock-related protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A7N0ZU01	1.4e-20	92.73	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1	[more]
A0A2U1LET4	1.4e-20	92.73	Chaperone protein dnaK2 OS=Artemisia annua OX=35608 GN=CTI12_AA498570 PE=3 SV=1	[more]
A0A2U1LEU5	1.4e-20	92.73	Chaperone protein dnaK2 OS=Artemisia annua OX=35608 GN=CTI12_AA498570 PE=3 SV=1	[more]
A0A5N6N5S0	1.4e-20	92.73	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_25460 PE=3 SV=1	[more]

BLAST of CsaV3_4G029110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49910.1	6.9e-23	85.45	chloroplast heat shock protein 70-2	[more]
AT4G24280.1	1.2e-22	85.45	chloroplast heat shock protein 70-1	[more]
AT5G09590.1	5.5e-12	55.56	mitochondrial HSO70 2	[more]
AT4G37910.1	2.1e-11	53.70	mitochondrial heat shock protein 70-1	[more]
AT1G09080.1	1.1e-09	50.00	Heat shock protein 70 (Hsp 70) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.640.10	Actin; Chain A, domain 4	coord: 20..54 e-value: 3.3E-16 score: 60.9
None	No IPR available	GENE3D	3.30.420.40		coord: 1..19 e-value: 3.3E-16 score: 60.9
None	No IPR available	PANTHER	PTHR19375:SF363	HEAT SHOCK 70 KDA PROTEIN 6, CHLOROPLASTIC-LIKE	coord: 1..55
IPR013126	Heat shock protein 70 family	PFAM	PF00012	HSP70	coord: 1..55 e-value: 1.7E-18 score: 66.2
IPR013126	Heat shock protein 70 family	PANTHER	PTHR19375	HEAT SHOCK PROTEIN 70KDA	coord: 1..55
IPR043129	ATPase, nucleotide binding domain	SUPERFAMILY	53067	Actin-like ATPase domain	coord: 2..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G029110.1	CsaV3_4G029110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity