CsaV3_4G028700 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G028700
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 18104714 .. 18104959 (-)
RNA-Seq Expression	CsaV3_4G028700
Synteny	CsaV3_4G028700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTGAACGACTTCGAAGATGACGAAACCCACGGAGGAACCGAACAGAGCAACATCGATCAAGGTCGTCAGCTTCAAAACGGTATGAATAGTGGCGACGCACTGTGCTGGTCATCATCCAACGTCAAAGGAGCTTCGTCGACATCGACGAGTTACATCGTTGTCGACTTGTCTCGCAACCCATGTGCGAGGAAGATGGAAGAGCGTCGACGTGAGAAATTTCTAGAGAATGGGAGAATATGGTGA

mRNA sequence

GTGTTGAACGACTTCGAAGATGACGAAACCCACGGAGGAACCGAACAGAGCAACATCGATCAAGGTCGTCAGCTTCAAAACGGTATGAATAGTGGCGACGCACTGTGCTGGTCATCATCCAACGTCAAAGGAGCTTCGTCGACATCGACGAGTTACATCGTTGTCGACTTGTCTCGCAACCCATGTGCGAGGAAGATGGAAGAGCGTCGACGTGAGAAATTTCTAGAGAATGGGAGAATATGGTGA

Coding sequence (CDS)

GTGTTGAACGACTTCGAAGATGACGAAACCCACGGAGGAACCGAACAGAGCAACATCGATCAAGGTCGTCAGCTTCAAAACGGTATGAATAGTGGCGACGCACTGTGCTGGTCATCATCCAACGTCAAAGGAGCTTCGTCGACATCGACGAGTTACATCGTTGTCGACTTGTCTCGCAACCCATGTGCGAGGAAGATGGAAGAGCGTCGACGTGAGAAATTTCTAGAGAATGGGAGAATATGGTGA

Protein sequence

VLNDFEDDETHGGTEQSNIDQGRQLQNGMNSGDALCWSSSNVKGASSTSTSYIVVDLSRNPCARKMEERRREKFLENGRIW*

Homology

[Close]

BLAST of CsaV3_4G028700 vs. NCBI nr
Match: KGN54840.2 (hypothetical protein Csa_012733, partial [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  VLNDFEDDETHGGTEQSNIDQGRQLQNGMNSGDALCWSSSNVKGASSTSTSYIVVDLSRN 60
          VLNDFEDDETHGGTEQSNIDQGRQLQNGMNSGDALCWSSSNVKGASSTSTSYIVVDLSRN
Sbjct: 1  VLNDFEDDETHGGTEQSNIDQGRQLQNGMNSGDALCWSSSNVKGASSTSTSYIVVDLSRN 60

Query: 61 PCARKMEERRREKFLENGRIW 82
          PCARKMEERRREKFLENGRIW
Sbjct: 61 PCARKMEERRREKFLENGRIW 81

[Close]

BLAST of CsaV3_4G028700 vs. NCBI nr
Match: TYK29898.1 (uncharacterized protein E5676_scaffold208G001570 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 8.0e-14
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   VLNDFEDDETHGGTEQSNIDQGRQLQNGMNSGDALCWSSSNVKGASSTSTSYIVV 56
           VLN FEDDET GGT+QSN +QGRQLQN +NSGDA+CWSSSN+KGA STS SY +V
Sbjct: 52  VLNSFEDDETRGGTKQSNTNQGRQLQNNVNSGDAVCWSSSNIKGALSTSASYTIV 106

[Close]

BLAST of CsaV3_4G028700 vs. ExPASy TrEMBL
Match: A0A5D3E286 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001570 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.9e-14
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   VLNDFEDDETHGGTEQSNIDQGRQLQNGMNSGDALCWSSSNVKGASSTSTSYIVV 56
           VLN FEDDET GGT+QSN +QGRQLQN +NSGDA+CWSSSN+KGA STS SY +V
Sbjct: 52  VLNSFEDDETRGGTKQSNTNQGRQLQNNVNSGDAVCWSSSNIKGALSTSASYTIV 106

The following BLAST results are available for this feature:

BLAST of CsaV3_4G028700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54840.2	3.9e-37	100.00	hypothetical protein Csa_012733, partial [Cucumis sativus]	[more]
TYK29898.1	8.0e-14	76.36	uncharacterized protein E5676_scaffold208G001570 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_4G028700 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G028700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E286	3.9e-14	76.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_4G028700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G028700.1	CsaV3_4G028700.1	mRNA