CsaV3_4G028050 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G028050
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	replication factor C subunit 4
Location	chr4: 17453127 .. 17458839 (-)
RNA-Seq Expression	CsaV3_4G028050
Synteny	CsaV3_4G028050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAATAATAAAATAGGCTTTAAATCGGCCATAAAAGTCCTCATGTTTGGGCTGTGGGCTTTATCATGTTTAATTAACAAAGACCGATTAAAAATTGAAGCTAATCCTCTCTCCGACTGAACGCGGGAAAAAGAAGTATAAACCCTATTTCCGGTGCCGAGGAGAGTGGATCAGCGTTAGAAGAAATGGCACCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATAGTACGTTTCCCTTTTTCAATTCACTTGTTTCTCAGAATCTGTTGCATTCTTTCTACCGTTGTTCATTTTTCCGATTGATAGTCGACCGAAGCAAGTGAAAGATGTAGCGCATCAGGATGAGGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAATGTACTTATCATTGATATCTCTTTTTTATTTTAATGGTGTTTGTAATGCTCTTTGCAACTCGGTGTTCATTTTCTATTCAATTGTTGGTTGGATAGTGTCCACATATGCTCTTCTATGGACCGCCTGGTACTGGAAAAACCACCACTGCTCTTGCAATTGCCCATCAATTATTCGGGTTCGTATTTGCTCCTGTCTGATTTATATAGTTCTATTTGTGCTTCTTTCGTTCCTGTTGTCTTTTTGGAAGATGTGGATTTGTGTTTGGTATTCAGAATCCATTATAAGAAATATCTTGGAATCTTTCCGTTGAGGGGTTGACTGGTTTTGAGGAGATTTTAATTTTATGAATTTTAATTTTGTTTATTCTTTAGTTGGGGTGGGTGTTATGGGATCTCAAATTTGAAAAATGGTGTGATCTTGCGCCCTTACCGAGATAGATGAGTTATTCCTCAGTCCTCTTATCTCGTCATCAATTGATTTTGAGATGAAACCTTGTGTTATGAAGCACATACATGAATATGATGGGATACATGGATACACTGATCTCTAAACAACTAGGATATGAATATATTCGGGATACGTTTTTTCATTAAAATTTTCTAGGCAATGTGTGTGTGCACCCATGTGACCGTTGTGGGGGCTCATGCATGGAGTTGAATATTAGATGATTCTAAGGTTCATGTTTATACTTTTTTTCCCTTATTTTTATTATATCTTCTTTTAGTTTGGGTTGGGGCAATGAGCTTTTAAATAGGCTGCTTAGTTTTTAGTTGAGGAAGATTAGATGAGTTGCATTTTTTATAGATCCAACATGAATAGATGTGCCAAATCTCATGTCAAGGAATATTGGTATCTGATATGATTCCGATACTGATTGTCTACCACAGTTGAAGTATCTGTGCTTCTTGTGTTATCTGATTAGTGAAGAGGTTTGCATCATAGATTCATACATGAAACTATAAATCAATCGTGATCTCATTATCATTATGGTTAAATGGTGTTAGCGAGATTCTGGGAGGTCTTTGCTCAAGACATTTATGATTTGCTTATTTCATAATGAAACCGTTCAACCTACTTGGCTTAATTTGTATTAAACATGAAATAGACAAAAATTAATGTCTTTTTAGTTTTTATTTGATACACAAAATATTTGACTGAAGAAGTATTATTTGCAGTCCCGAACTTTACAAGTCTAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGGCAAGGGTACTTTTCTTAATCATATCTATCAATATAACTTTTCATAACATTCTTGTTATGAGCTTCACACTTCTTACAAAAGAAAATAAATCCAGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGGTGTGATCACAATGTAGATATAATTTCTTTTTTTAGTTACTGTGAGTTAAACTTTTTTCTCTTCCTTATATGAAACATGATGTAGAATGCCTTGAGGCGTACCATGGAAACACACTCCAAAGTGACACGATTCTTTTTTATTTGCAACTATATCAGCAGGTAAGGCATAGCTTCCTTTTATCGTGTTTTATTCCTCTCTATATTGTTGTAAATTTTGCTTTTCTTTTTTCCTGTTTGGTTGATGTTTGTAGTCTACAATATATTGTTGTGGCATTTTTTTTGGATTTTTGCTTTTGATACTTATGACAGTTTCCAAACTTTTGTGGCGAAATTATTAATCATAGCTCATATGATGTTTGCACTTGCAAGCCACTTATGGAAAACAAAATTGGAAGGGTTGGTGGTAGTTTTCCTCCGGTTAAATAATTGAGAGAGAGAGAGGGTATGTGGATCAGATCTTTGAAAGCAATGGTTGCATCACCGTTATGGTCCATAGATTAGTTTTTAACTAGACCACAATTTAATTGTCAAAAAAGGTAAATTCACAAAGACTATGGGAGCCCAATGTTTTTTAAAGCGAAAAAGTCTTCTGGCGCTTAAGCGCAAGGCACAATAAAGCGCAATAGTTTTCAAGGGCTCAAGTGCAAAACCCAAAACAGAAAACGTAGTCTTTTTTTCGAGGCATTTTGCATTTAGGTTTAGTAAATTCCATTTTTTAGTTATTATTGCAGGGAAAATCTCAATTACTTATATTTCTAAAAATAATAAAAAAGCCCCAAGGCATGGCTTTGAGCCTTGGGGCTTCACAAACGATGCATGAGGTGTGCTTTATTTTGTGAGCCTAAAGGCGAGGCACCCGACCTGCAGATGCATGACGGGGAGGGCTTTTAAAACAGTGTGGGAGTCTGATTTTTGATAAAATTTGTGAATGAGCTGGAGGATGAATATAATGAAGCAGTTGCTACTCAATTTTTTGTGAAATTTGGACATTCTCGATTTTTTATATTCATTTTTTTTATGGAGGCATGGGGATTATTATAGATATTTGCAACATCTGTTCAATTTACGAAAATGTGGCATCAATTTGTCTTGTGCCTTATATATGGTTCACAATCATTTGACTTGTTGGAGAATACTGGAAACTGGTTTCTTTATGTTCTTGATTTCTACAATGGATTACTTTTACTTGGTCTTGACACGGTGCTAGCATGGGGATTCTGTTGTCTTAGTTTTCCCCCCCTCATCTATGCAGGATTATAGAGCCCCTTGCATCTAGGTGTGCAAAGTTTAGGTTTAAGCCACTTTCTGAAGAGGTTATGAGTAAGCGTATATTGCACATCGGCAATGAAGAAGGTCTTAGTCTAGACGGAGAGGTTAGCTCTTTGTTGCCAAGTAATAGAAATTATGGTTTGAAAAAAGCTATTTGGCATGGCTAATATGATGTAAACTTATAATCTGTGTAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGGTATGATTCAAATGCAACACTGCTGTTCACCATTAAGTTAAAGATGTTTAGATTAGGAATCTGTTAGGATCCCACCTAACAAGGAGAAAAGATGAACTCAAGAATACTTAAAAACATCCAAATATTAAATATATATTAGATGATCATAAGAACAAGTAACAAGTAACCCTAGCCTTTCGAGAGGGCTAGACTCTCCCAAGGTTCCCTTACAAGGAAATCTTTCTTCAAAATTCTTCACACCTCTCCCCAACCCCTCTCCCACTATTTATAACAAAAAGACCTAACCAACTTACCATCTATTTACTAATATGGCCTTGCTAAACAACCATTTTCATTTTCTCCTAATAATCCACTAATTTTCTATCTAGGGTCCTTACAGAATCATCACATTATTATTGTTATTATTATTTTCGGTTGACAATGTTTCTTTTGTTATTCCACATTATGTTAAACATGATTAGGAGCTTGGATGATTAACGGGTAAACATTTTCTACTATAATTAGTCAAAGTTAAATTTTGTTGGGGCGACATGATATTAGCATTTAGGTTATCAGTTATTCTGATTTATCATTGATGCCCTTAAATGCTTCTGTTATGTTAACACAAAATATCAGATTATTGTAGAATGGGATTGGCAATTAATCCAATTGCTCATTTCTTATTTTCTAACTTTTATTTTTTTCCCCTCCAGTCAGCTGCACGCTTATTTGGATCATCAATCTCTTCAAAGGATTTGGTTAACGTCTCTGGGGTGAGTAATGTGAATTTTCATGAGTCATTGTCATTTCTAGGATTCTAAGTACGAATATTTAGAAATGGTTGTGCTTACTAATGGTTCACTTTGGTCCCACTCTCGCCTCAGCAACACTGGCTTTCTCTTGAATCCATGTTCCAAAACAGAACTATTTGGAGAGTGACTATAACTGCACAAAGTGTTATCTGTTGTTTTTTTTTTCTTTTCAGATGGTTGAATTTAACTAGATGATGTCTTATATTTTTTGTGTTGTAAGAGTTTCAAGTGTCCTATTTTCTGCCATTAATTGTCACAATGATCATAAGGGTTTTTTGGTAATTTAATAGTGGATGGTTTCCATTTTTTTTCTTCAATATTATCAATAAACTGCTCGAGAGATGCACAGAATTTTTCTTGTGTTGTTATATTAATGCATGATGTACTATCTAAAATTTTTCCATTGTAGATTATCCCTCAGGAGGTTGTTGATGCACTTTTTGTTGCTTGTAAAAGTGGTAACTTCGATACTGCAAACAAGAAAGTCAACAATGTACTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGGTTTTGTTATTTCTCAATCTATATAATGTCGTATTTTTAATGGCTGAATGGAAATATGTAAAACTTCGATGTTTCCTACAGATATTTGAAGTGGTGATTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCCGAAGCTGACAAGGTTTGTTGTATCTATTTCCATGTTCAATTGTTCCAATATGCATCTATATATAGATAGATATACACATATATATATTTCCATGTTCATTTACGTTTTTGCTCTCTAAAGTTCATGTGAATCATGCATCAGTTTGGACATATATTATTAGTTTTAGTCAGTAATTTGGACTGTACAACATTGAATTAATAGATTCTCTCAATCTATTATGTATTTTGAACATGCAACATGATTACTTTCTTGCAAATATTGGTTATTCTATAAGGAATTGTTTTCAATGTCAACTAATCGACACAAATTTGACAACAGACATTACCATTTTATTTATTTCTTTTTTCATGAGATATATATATGGGATTTGTTGATATGTTTCGGATTTTATGTTCATGTCATGTATTAGGCAACCTGTTTGTAGTGCATTGAAGATTTAATGTTAAATTGCATATTAGACTTGAATTGGTTATACTCTTAATCCAAACCAACACTGTTGAGATATCAATTTGCAGTGTCTCGTTGATGGTGCGGATGAATATTTGCAACTGCTCGATGTGGTAAGTCAAACAATGCAAGTTTTAAGAAGTATACAACTGTAGATCTTTGATTAAACTCGGGGGGTTTTGGTATCGGATATATATAACGTATGCCATTTAGTATAGAGATAAAATGTAGCTTTTGACTTGTAGAAATTGTTTTAGAATTGTATTGTAGCTGCTGAATTGATATGGTCAATGTTGTTTATTTAATCTCTTATTTTCTTATGGTTTCTTCAACATTTCCATATTATTTCATCAAATTTTTGAGAAAGAACTATGGATATGATTTCTGAATTACAAATTCTCAAAATAGGTCATTC

mRNA sequence

ATGGCACCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTAGCGCATCAGGATGAGGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAATTGTCCACATATGCTCTTCTATGGACCGCCTGGTACTGGAAAAACCACCACTGCTCTTGCAATTGCCCATCAATTATTCGGTCCCGAACTTTACAAGTCTAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGGCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCTTGAGGCGTACCATGGAAACACACTCCAAAGTGACACGATTCTTTTTTATTTGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCTAGGTGTGCAAAGTTTAGGTTTAAGCCACTTTCTGAAGAGGTTATGAGTAAGCGTATATTGCACATCGGCAATGAAGAAGGTCTTAGTCTAGACGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCTGCACGCTTATTTGGATCATCAATCTCTTCAAAGGATTTGGTTAACGTCTCTGGGATTATCCCTCAGGAGGTTGTTGATGCACTTTTTGTTGCTTGTAAAAGTGGTAACTTCGATACTGCAAACAAGAAAGTCAACAATGTACTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAAGTGGTGATTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCCGAAGCTGACAAGTGTCTCGTTGATGGTGCGGATGAATATTTGCAACTGCTCGATGTGGTAAGTCAAACAATGCAAGTTTTAAGAAGTATACAACTGTAG

Coding sequence (CDS)

ATGGCACCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTAGCGCATCAGGATGAGGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAATTGTCCACATATGCTCTTCTATGGACCGCCTGGTACTGGAAAAACCACCACTGCTCTTGCAATTGCCCATCAATTATTCGGTCCCGAACTTTACAAGTCTAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGGCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCTTGAGGCGTACCATGGAAACACACTCCAAAGTGACACGATTCTTTTTTATTTGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCTAGGTGTGCAAAGTTTAGGTTTAAGCCACTTTCTGAAGAGGTTATGAGTAAGCGTATATTGCACATCGGCAATGAAGAAGGTCTTAGTCTAGACGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCTGCACGCTTATTTGGATCATCAATCTCTTCAAAGGATTTGGTTAACGTCTCTGGGATTATCCCTCAGGAGGTTGTTGATGCACTTTTTGTTGCTTGTAAAAGTGGTAACTTCGATACTGCAAACAAGAAAGTCAACAATGTACTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAAGTGGTGATTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCCGAAGCTGACAAGTGTCTCGTTGATGGTGCGGATGAATATTTGCAACTGCTCGATGTGGTAAGTCAAACAATGCAAGTTTTAAGAAGTATACAACTGTAG

Protein sequence

MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGIIPQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL*

Homology

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BLAST of CsaV3_4G028050 vs. NCBI nr
Match: XP_004142636.1 (replication factor C subunit 4 [Cucumis sativus] >KGN54543.1 hypothetical protein Csa_012818 [Cucumis sativus])

HSP 1 Score: 659.8 bits (1701), Expect = 1.2e-185
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
           KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII
Sbjct: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
           PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC
Sbjct: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL 336

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BLAST of CsaV3_4G028050 vs. NCBI nr
Match: XP_008444196.1 (PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 4 [Cucumis melo])

HSP 1 Score: 643.3 bits (1658), Expect = 1.2e-180
Identity = 326/336 (97.02%), Postives = 332/336 (98.81%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AI+HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRF FICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFXFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
           KRILHI NEEGLSLDGEALSTLSS+SQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII
Sbjct: 181 KRILHISNEEGLSLDGEALSTLSSMSQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
           P+EVVDALF ACKSGNFDTANK+VNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC
Sbjct: 241 PREVVDALFTACKSGNFDTANKEVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQ LRS+QL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALRSMQL 336

[Close]

BLAST of CsaV3_4G028050 vs. NCBI nr
Match: XP_038897028.1 (replication factor C subunit 4 [Benincasa hispida])

HSP 1 Score: 639.4 bits (1648), Expect = 1.7e-179
Identity = 324/336 (96.43%), Postives = 331/336 (98.51%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AI+HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
           KRILHI NEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLV+VSGII
Sbjct: 181 KRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVSVSGII 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
           P+EVVDALF ACKSGNFD ANK+VNNVLAEGYPVAQMLSQIFEVV+EDNDLQDEQKARIC
Sbjct: 241 PREVVDALFSACKSGNFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQ L S+QL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL 336

[Close]

BLAST of CsaV3_4G028050 vs. NCBI nr
Match: XP_023523758.1 (replication factor C subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 626.7 bits (1615), Expect = 1.2e-175
Identity = 316/333 (94.89%), Postives = 326/333 (97.90%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE+VMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEKVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
           KRILHI NEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDL++VSGII
Sbjct: 181 KRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
           P+EVVD LF ACKSGNFD ANK+VNNV+AEGYPVAQMLSQIFEVVIE +DLQDEQKA+IC
Sbjct: 241 PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRS 334
           KKLAEADKCLVDGADEYLQLLDVVSQTMQ L S
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSS 333

[Close]

BLAST of CsaV3_4G028050 vs. NCBI nr
Match: XP_022981026.1 (replication factor C subunit 4 [Cucurbita maxima])

HSP 1 Score: 623.6 bits (1607), Expect = 9.8e-175
Identity = 314/333 (94.29%), Postives = 324/333 (97.30%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET++CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHS VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSNVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
           KRILHI NEEGLSLDGEALSTL SISQGDLRRAITYLQSAARLFGSSISSKDL++VSGII
Sbjct: 181 KRILHISNEEGLSLDGEALSTLGSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
           P+EVVD LF ACKSGNFD ANK+VNNV+AEGYPVAQMLSQIFEVVIE +DLQDEQKA+IC
Sbjct: 241 PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRS 334
           KKLAEADKCLVDGADEYLQLLDVVSQTMQ L S
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSS 333

[Close]

BLAST of CsaV3_4G028050 vs. ExPASy Swiss-Prot
Match: Q93ZX1 (Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=1 SV=1)

HSP 1 Score: 556.6 bits (1433), Expect = 1.9e-157
Identity = 279/332 (84.04%), Postives = 306/332 (92.17%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAV S  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
            RILHI NEEGLSLDGEALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL+NVSG++
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIE-DNDLQDEQKARI 300
           P EVV+ LF ACKSG+FD ANK+V+N++AEGYP +Q+++Q+F++V E D+D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 301 CKKLAEADKCLVDGADEYLQLLDVVSQTMQVL 332
           CK LAE DK LVDGADEYLQLLDV S T+  L
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICAL 332

[Close]

BLAST of CsaV3_4G028050 vs. ExPASy Swiss-Prot
Match: Q9FXM3 (Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 548.1 bits (1411), Expect = 6.8e-155
Identity = 271/331 (81.87%), Postives = 305/331 (92.15%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAPL+ SSQPWVEKYRP+QVKDVAHQ+EVVRVLT TL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIKDFA VAV S  R+GGYPCPP+KIII
Sbjct: 61  AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSA-RKGGYPCPPYKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
            RILHI NEEGLSLD +AL+TLS+IS GDLRRAITYLQSAARLFGSSISS DL++VSG I
Sbjct: 181 NRILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAI 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
           P++VV +L  +CKSG FD ANK+VNN++A+GYPV+Q++SQ  +V++  +D+ DEQKARIC
Sbjct: 241 PEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVL 332
           KKL EADKCLVDGADEYLQLLDV S+T++ L
Sbjct: 301 KKLGEADKCLVDGADEYLQLLDVASETIRAL 330

[Close]

BLAST of CsaV3_4G028050 vs. ExPASy Swiss-Prot
Match: Q99J62 (Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 2.7e-103
Identity = 186/323 (57.59%), Postives = 243/323 (75.23%), Query Frame = 0


Query: 10  PWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
           PWVEKYRPK V +VA QDEVV VL  +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39  PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98

Query: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTE 129
           EL++ RVLELNASD+RGI VVR K+K+FA + V SG R  G PCPPFKI+ILDEADSMT 
Sbjct: 99  ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 158

Query: 130 DAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNE 189
            AQ ALRRTME  SK TRF  ICNY+SRIIEPL SRC+KFRFKPLS+++  +R+L I  +
Sbjct: 159 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEK 218

Query: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLV-NVSGIIPQEVVDAL 249
           E + +  E ++ L  IS+GDLR+AIT+LQSA RL G    S+D++ +++G+IP   +D +
Sbjct: 219 ENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGI 278

Query: 250 FVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADK 309
           F AC SG+FD     V N++ EG+   Q+++Q+ + +IE+ +L D+ K+ I +KLAE DK
Sbjct: 279 FTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDK 338

Query: 310 CLVDGADEYLQLLDVVSQTMQVL 332
           CL DGADE+LQL+ + +  MQ L
Sbjct: 339 CLADGADEHLQLMSLCATVMQQL 360

[Close]

BLAST of CsaV3_4G028050 vs. ExPASy Swiss-Prot
Match: P35249 (Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2)

HSP 1 Score: 375.6 bits (963), Expect = 6.1e-103
Identity = 187/323 (57.89%), Postives = 246/323 (76.16%), Query Frame = 0


Query: 10  PWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
           PWVEKYRPK V +VA Q+EVV VL  +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98

Query: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTE 129
           EL++ RVLELNASD+RGI VVR K+K+FA + V SG R  G PCPPFKI+ILDEADSMT 
Sbjct: 99  ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 158

Query: 130 DAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNE 189
            AQ ALRRTME  SK TRF  ICNY+SRIIEPL SRC+KFRFKPLS+++  +R+L I  +
Sbjct: 159 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKK 218

Query: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSAARLF-GSSISSKDLVNVSGIIPQEVVDAL 249
           E + +  E ++ L  +S+GDLR+AIT+LQSA RL  G  I+ K + +++G+IP E +D +
Sbjct: 219 ENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGV 278

Query: 250 FVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADK 309
           F AC+SG+FD     V +++ EG+   Q+++Q+ +VV+E N+L D+QK+ I +KLAE DK
Sbjct: 279 FAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDK 338

Query: 310 CLVDGADEYLQLLDVVSQTMQVL 332
           CL DGADE+LQL+ + +  MQ L
Sbjct: 339 CLADGADEHLQLISLCATVMQQL 359

[Close]

BLAST of CsaV3_4G028050 vs. ExPASy Swiss-Prot
Match: Q54MD4 (Probable replication factor C subunit 4 OS=Dictyostelium discoideum OX=44689 GN=rfc4 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 7.2e-96
Identity = 171/328 (52.13%), Postives = 229/328 (69.82%), Query Frame = 0


Query: 6   QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 65
           + ++PWV KYRPK V DV++Q++V+  L  +L T N PH+LFYGPPGTGKT+T LAIA  
Sbjct: 7   KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66

Query: 66  LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEAD 125
           ++GPEL K RVLELNASD+RGI VVRTKIK+FAG AV+        P   FK+IILDEAD
Sbjct: 67  IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126

Query: 126 SMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILH 185
           SMT DAQ ALRRT+ET SK TRF  +CNYISRII+PLASRCAKFRFKPL      +R+  
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186

Query: 186 IGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGIIPQEVV 245
           I  +EG+  +      +  +S GD+R+AITYLQSA R F + IS   + N++G +P +++
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLI 246

Query: 246 DALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAE 305
             L   CK  +FD     V +++A+GYPV+Q++SQ+F+ V+   DL   QK+ I  K+  
Sbjct: 247 KQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGN 306

Query: 306 ADKCLVDGADEYLQLLDVVSQTMQVLRS 334
            D+ L+DG++E+LQL D+ S  M+ L +
Sbjct: 307 VDRNLIDGSEEFLQLFDLSSYIMKQLNN 334

[Close]

BLAST of CsaV3_4G028050 vs. ExPASy TrEMBL
Match: A0A0A0KYI8 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G361280 PE=3 SV=1)

HSP 1 Score: 659.8 bits (1701), Expect = 6.0e-186
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
           KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII
Sbjct: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
           PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC
Sbjct: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL 336

[Close]

BLAST of CsaV3_4G028050 vs. ExPASy TrEMBL
Match: A0A1S3B9T6 (LOW QUALITY PROTEIN: replication factor C subunit 4 OS=Cucumis melo OX=3656 GN=LOC103487609 PE=3 SV=1)

HSP 1 Score: 643.3 bits (1658), Expect = 5.8e-181
Identity = 326/336 (97.02%), Postives = 332/336 (98.81%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AI+HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRF FICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFXFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
           KRILHI NEEGLSLDGEALSTLSS+SQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII
Sbjct: 181 KRILHISNEEGLSLDGEALSTLSSMSQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
           P+EVVDALF ACKSGNFDTANK+VNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC
Sbjct: 241 PREVVDALFTACKSGNFDTANKEVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL 337
           KKLAEADKCLVDGADEYLQLLDVVSQTMQ LRS+QL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALRSMQL 336

[Close]

BLAST of CsaV3_4G028050 vs. ExPASy TrEMBL
Match: A0A6J1IVB8 (replication factor C subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111480296 PE=3 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 4.7e-175
Identity = 314/333 (94.29%), Postives = 324/333 (97.30%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET++CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHS VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSNVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
           KRILHI NEEGLSLDGEALSTL SISQGDLRRAITYLQSAARLFGSSISSKDL++VSGII
Sbjct: 181 KRILHISNEEGLSLDGEALSTLGSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
           P+EVVD LF ACKSGNFD ANK+VNNV+AEGYPVAQMLSQIFEVVIE +DLQDEQKA+IC
Sbjct: 241 PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRS 334
           KKLAEADKCLVDGADEYLQLLDVVSQTMQ L S
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSS 333

[Close]

BLAST of CsaV3_4G028050 vs. ExPASy TrEMBL
Match: A0A6J1FIS1 (replication factor C subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111445849 PE=3 SV=1)

HSP 1 Score: 619.0 bits (1595), Expect = 1.2e-173
Identity = 312/333 (93.69%), Postives = 323/333 (97.00%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET++CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMG 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
           KRILHI NEEGLSLD EALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDL++VSGII
Sbjct: 181 KRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
           P+EVVD LF AC+SGNFD ANK+VNNV+AEGYPVAQMLSQIFEVVIE +DLQDEQ A+IC
Sbjct: 241 PREVVDELFAACRSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQTAKIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRS 334
           KKLAEADKCLVDGADEYLQLLDVVSQTMQ L S
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSS 333

[Close]

BLAST of CsaV3_4G028050 vs. ExPASy TrEMBL
Match: A0A6J1C0Y1 (replication factor C subunit 4 OS=Momordica charantia OX=3673 GN=LOC111006413 PE=3 SV=1)

HSP 1 Score: 617.1 bits (1590), Expect = 4.4e-173
Identity = 313/335 (93.43%), Postives = 323/335 (96.42%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAPL QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET++CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV SGQRQGGYPCPPFKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
           KRILHI NEE LSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDL++VSG+I
Sbjct: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
           P+EVV+ALF ACKSGNFD ANK+VNNV AEGYPVAQMLSQIFEVV+E N LQDEQKARIC
Sbjct: 241 PREVVNALFAACKSGNFDLANKEVNNVTAEGYPVAQMLSQIFEVVVEANHLQDEQKARIC 300

Query: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQ 336
           KKLAEADKCLVDGADEYLQLLDVVSQTMQ   S+Q
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQ 335

[Close]

BLAST of CsaV3_4G028050 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 556.6 bits (1433), Expect = 1.4e-158
Identity = 279/332 (84.04%), Postives = 306/332 (92.17%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAV S  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
            RILHI NEEGLSLDGEALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL+NVSG++
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIE-DNDLQDEQKARI 300
           P EVV+ LF ACKSG+FD ANK+V+N++AEGYP +Q+++Q+F++V E D+D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 301 CKKLAEADKCLVDGADEYLQLLDVVSQTMQVL 332
           CK LAE DK LVDGADEYLQLLDV S T+  L
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICAL 332

[Close]

BLAST of CsaV3_4G028050 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 535.0 bits (1377), Expect = 4.3e-152
Identity = 272/332 (81.93%), Postives = 299/332 (90.06%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAHQLFG       VLELNASDDRGINVVRTKIKDFA VAV S  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
            RILHI NEEGLSLDGEALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL+NVSG++
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIE-DNDLQDEQKARI 300
           P EVV+ LF ACKSG+FD ANK+V+N++AEGYP +Q+++Q+F++V E D+D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 301 CKKLAEADKCLVDGADEYLQLLDVVSQTMQVL 332
           CK LAE DK LVDGADEYLQLLDV S T+  L
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICAL 325

[Close]

BLAST of CsaV3_4G028050 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 528.5 bits (1360), Expect = 4.0e-150
Identity = 269/332 (81.02%), Postives = 294/332 (88.55%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAP+LQSSQPWVEKYRPKQVKDVAHQ+EV            CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAV S  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
            RILHI NEEGLSLDGEALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL+NVSG++
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIE-DNDLQDEQKARI 300
           P EVV+ LF ACKSG+FD ANK+V+N++AEGYP +Q+++Q+F++V E D+D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 301 CKKLAEADKCLVDGADEYLQLLDVVSQTMQVL 332
           CK LAE DK LVDGADEYLQLLDV S T+  L
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICAL 320

[Close]

BLAST of CsaV3_4G028050 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 527.3 bits (1357), Expect = 8.9e-150
Identity = 262/309 (84.79%), Postives = 288/309 (93.20%), Query Frame = 0


Query: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
           MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAV S  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
            RILHI NEEGLSLDGEALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL+NVSG++
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIE-DNDLQDEQKARI 300
           P EVV+ LF ACKSG+FD ANK+V+N++AEGYP +Q+++Q+F++V E D+D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 301 CKKLAEADK 309
           CK LAE DK
Sbjct: 301 CKCLAETDK 309

[Close]

BLAST of CsaV3_4G028050 vs. TAIR 10
Match: AT1G63160.1 (replication factor C 2 )

HSP 1 Score: 197.6 bits (501), Expect = 1.6e-50
Identity = 121/319 (37.93%), Postives = 178/319 (55.80%), Query Frame = 0


Query: 8   SQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 67
           ++PWVEKYRP +V D+   ++ V  L       N P+++  GPPGTGKTT+ LA+AH+L 
Sbjct: 14  NEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 73

Query: 68  GPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSM 127
           G   YK  VLELNASDDRGI+VVR KIK FA       Q++   P    K++ILDEADSM
Sbjct: 74  GTN-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSM 133

Query: 128 TEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIG 187
           T  AQ ALRRT+E +S  TRF   CN  ++IIEP+ SRCA  RF  LS++ +  R+L + 
Sbjct: 134 TSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVV 193

Query: 188 NEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGIIPQEVVDA 247
             E +    E L  +   + GD+R+A+  LQ+    F S ++ +++  V        V  
Sbjct: 194 AAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF-SFVNQENVFKVCDQPHPLHVKN 253

Query: 248 LFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEAD 307
           +        FD A   +  +   GY    +++ +F  +I++ D+ +  K    K+   A 
Sbjct: 254 IVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFR-IIKNYDMAEYLKLEFMKETGFAH 313

Query: 308 KCLVDGADEYLQLLDVVSQ 327
             + DG   YLQL  ++++
Sbjct: 314 MRICDGVGSYLQLCGLLAK 322

The following BLAST results are available for this feature:

BLAST of CsaV3_4G028050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142636.1	1.2e-185	100.00	replication factor C subunit 4 [Cucumis sativus] >KGN54543.1 hypothetical protei...	[more]
XP_008444196.1	1.2e-180	97.02	PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 4 [Cucumis melo]	[more]
XP_038897028.1	1.7e-179	96.43	replication factor C subunit 4 [Benincasa hispida]	[more]
XP_023523758.1	1.2e-175	94.89	replication factor C subunit 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022981026.1	9.8e-175	94.29	replication factor C subunit 4 [Cucurbita maxima]	[more]

BLAST of CsaV3_4G028050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZX1	1.9e-157	84.04	Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=1 SV=1	[more]
Q9FXM3	6.8e-155	81.87	Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 ...	[more]
Q99J62	2.7e-103	57.59	Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1	[more]
P35249	6.1e-103	57.89	Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2	[more]
Q54MD4	7.2e-96	52.13	Probable replication factor C subunit 4 OS=Dictyostelium discoideum OX=44689 GN=...	[more]

BLAST of CsaV3_4G028050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYI8	6.0e-186	100.00	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G361280 PE=3 SV...	[more]
A0A1S3B9T6	5.8e-181	97.02	LOW QUALITY PROTEIN: replication factor C subunit 4 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1IVB8	4.7e-175	94.29	replication factor C subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111480296 PE=3 ...	[more]
A0A6J1FIS1	1.2e-173	93.69	replication factor C subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111445849 PE=...	[more]
A0A6J1C0Y1	4.4e-173	93.43	replication factor C subunit 4 OS=Momordica charantia OX=3673 GN=LOC111006413 PE...	[more]

BLAST of CsaV3_4G028050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21690.1	1.4e-158	84.04	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.4	4.3e-152	81.93	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.2	4.0e-150	81.02	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	8.9e-150	84.79	ATPase family associated with various cellular activities (AAA)	[more]
AT1G63160.1	1.6e-50	37.93	replication factor C 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 41..174 e-value: 1.4E-13 score: 61.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 3..173 e-value: 1.7E-55 score: 189.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 8..234
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 45..172 e-value: 4.7E-17 score: 62.7
IPR013748	Replication factor C, C-terminal	PFAM	PF08542	Rep_fac_C	coord: 241..326 e-value: 1.1E-21 score: 77.0
None	No IPR available	GENE3D	1.20.272.10		coord: 240..330 e-value: 2.5E-32 score: 113.0
None	No IPR available	GENE3D	1.10.8.60		coord: 176..239 e-value: 7.0E-15 score: 56.4
None	No IPR available	PANTHER	PTHR11669:SF20	REPLICATION FACTOR C SUBUNIT 4	coord: 7..330
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 7..330
None	No IPR available	CDD	cd18140	HLD_clamp_RFC	coord: 174..236 e-value: 4.62454E-13 score: 61.3909
None	No IPR available	CDD	cd00009	AAA	coord: 26..166 e-value: 1.77242E-25 score: 97.9871
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 240..326

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G028050.1	CsaV3_4G028050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding