CsaV3_4G028020 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G028020
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DNA topoisomerase 2-binding protein 1
Location	chr4: 17417632 .. 17420304 (+)
RNA-Seq Expression	CsaV3_4G028020
Synteny	CsaV3_4G028020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAATTTTTAGCCTATTTTTGGCAATTTCCCAAAACCCTTCCCGCCATTCACACTCTCACTCTTTCATCCCTCCAATTTCTCACAAAATCCTCTCTCGCCGGACTTCCATCGACACAGAAAGTAATCGAAGCAACTTCCCTAATGCTGAAGCCCAAGCCATTCGCCGGAGCTAATGTGTTCGTCTCTCGTAATCTTGTCGCTCCGGAGATGTTCGATGCTCTTCACGACGCTCTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCCGCCGATCACGTACGAAACGTCTCATCGATTTCTTGTTCAATTTCTATCGCTACTTCGGATTGGCGATGTGTTTATTGGTTGTTGATTCCTGCTTTCAGGCAAAGTTCGAGGATCTTCGCGCCAAGGGATGCAACTTGTTAGGTATAGTTAATTTGTGGTTCCGGCCTTTTCTTTCTTTCTTTTGCGGAATAGAATTGGATAGAAATTTTCGACTGGAGAATGAGATTAACAGGAAATTGAATGTCTCGATTAATTTGTCAAATTTTATAGTTACCGCATTGCAGCTAATATTTGTCAGTGCATGCTGCATGTACCCAGTAGCCAAGTAATATATACTTCACTGCTCACTCTTTTCGAATAGCCAAACCTAGTTGTTTGAAATTCTCATTTCAGTCCGACGCCTGGGACTTGGTGCGTCGCTGACAACTTGAATTTCTGTTGGGAAGGTCCTCAGTGCGTGATGTCATGTGCAAAAGAGCACAGACCCCTTCCTCAACAGGGTTATACTTGCTGCCTTGCCATGGATGGTGTGAAAATCTTGGCATCGGGTTTTCAGGAAGATGAAAAGGTACGTTGCAAATGTTCCTAGTCCACCCATCTTTTTTCTTATTAGTAATTAGTAATTTTATTTTTGTAGAACTAATGACACAGAGTTGCATTGCAGGTTGAGATAGGGAAGTTAGTTAGTGCAATGGGGGGAGTATTGCATACGAAAGCATCACTAGATGTCAGTTTTGTTATTGCGAAGAATGCTTTGGCTGCGAAATACAAGGTTGTGTTGCTTGAACTTTCGATTTTCTTGACGTGATATGTATGTGTATTTAGACTATTTCATGAATATCATGTGAATCATAGGATTTGAGTCAATTAAACTTCACGAATTTCATTTTTTAATCAATTTAGACCTTTAATTACGATTACCTTCAAATTGCTCTAATTGATATAATTATAAGTTTCACACAATTTTTTTTTATAAAAGAATGTAATAGAGGGCATAAATTGATACACTAACAAAAGTCAGGGTTTAAATTGATACAATCTCTAAGGTTTGGGGGTATAAATTGATATTCTCCCTTAATATAATTGTTAAATGTGTAATAGACTTAACAATGGTTTTTAGTTTTATTCTACCTGAAATTTTATTGCAAAGGTTTTGACAGATACTTGCATATTATTTTCTCTGTTTTCAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGTCATTTTCTTGGTTACAACAATGCTGGATTGAACATCGTGTTGTGCCTCAGGAGGATATCGGGTCCTTCCATTTTCTGGATTGAATATTTCGGTATCTGGAATTCCTGCAGGTTGTGTTTTATAATATTTTATTTCTTCTCAGAGAAAATTGTTTTCTTGTATTTTTTTCTTATTTATATAAATATATTAATTTTTAACATTTATGGTCCTTTTGGGGACATCTGATAAAATTGTGTTAGTTCCATCATTTCTGGGTCTCAGGTGAGCGCAAGGAGATGGAAAAGCTTATCTTGCAAAATGGTGGAAGATATTCTGCCGATCTCACAAGAAAGTGTACACATTTGATATGTGATATATCCTTTTTGCATTTTTTTTCTTGACATTACTTTTGATCTTTTCACTTCTTGTTTGAAGCACTCAAATTTATGTGCTGGAAAAACATCGTACTGCAGCTTAAGTTACAGAATAAATGGATATGGATAATAAATACTAATAAAAATATTAACTTTGAACAATATGTCTTGGGATCTTTCATAGGGCCTCTATTTCTTTTCAAGTGCTATTATTGGCAGTATTTGACCGTAATAGTTGCAACTGCTTTAGTTTGTTTCATTGTATTTTGAGCATTAGTCTCTTTAAATTTTACCAAGGAAAAGTCTTGTATCTTATTTATTTGAAATTGGATCAGCACTGATTATATGATTATTAACTCAATCATTCATTATTCCTTCTCTTCCGGTAGTAATGACCCTTCCCAGTGTCAGGCGATTCACTTATGATGATAACTATTCTTTTAATGATCTTTAATGGCTGTATTTTCTTTTCCATATCTCTTCGAACAATCCTAAAAGGATGTGAGATTGACACGAATGAGGTACTGCCTCATCCAAGAACAAAATTGATCACTTTTTTTCCCTTGACAATCTCTCTAGTTTCTAGTTGAGGTTAAGTGATGGGAATGACTAACCACACTCACAAACGTTTATTTGTATGGCCATTGCAAGCATGCTGCTTGCATAGACAATCCATTTCTAAATAGTTGCATAGAATGTTTACTTATTGGTATTAAATATTCTTGTTTGAATAAGAGGTTTTCTTTAATGGTTAAGTAAGCTCCTGAAGGTGACAAGTACAAG

mRNA sequence

ATGCTGAAGCCCAAGCCATTCGCCGGAGCTAATGTGTTCGTCTCTCGTAATCTTGTCGCTCCGGAGATGTTCGATGCTCTTCACGACGCTCTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCCGCCGATCACGCAAAGTTCGAGGATCTTCGCGCCAAGGGATGCAACTTGTTAGGTCCTCAGTGCGTGATGTCATGTGCAAAAGAGCACAGACCCCTTCCTCAACAGGGTTATACTTGCTGCCTTGCCATGGATGGTGTGAAAATCTTGGCATCGGGTTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAGTGCAATGGGGGGAGTATTGCATACGAAAGCATCACTAGATGTCAGTTTTGTTATTGCGAAGAATGCTTTGGCTGCGAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGTCATTTTCTTGGTTACAACAATGCTGGATTGAACATCGTGTTGTGCCTCAGGAGGATATCGGGTCCTTCCATTTTCTGGATTGA

Coding sequence (CDS)

ATGCTGAAGCCCAAGCCATTCGCCGGAGCTAATGTGTTCGTCTCTCGTAATCTTGTCGCTCCGGAGATGTTCGATGCTCTTCACGACGCTCTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCCGCCGATCACGCAAAGTTCGAGGATCTTCGCGCCAAGGGATGCAACTTGTTAGGTCCTCAGTGCGTGATGTCATGTGCAAAAGAGCACAGACCCCTTCCTCAACAGGGTTATACTTGCTGCCTTGCCATGGATGGTGTGAAAATCTTGGCATCGGGTTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAGTGCAATGGGGGGAGTATTGCATACGAAAGCATCACTAGATGTCAGTTTTGTTATTGCGAAGAATGCTTTGGCTGCGAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGTCATTTTCTTGGTTACAACAATGCTGGATTGAACATCGTGTTGTGCCTCAGGAGGATATCGGGTCCTTCCATTTTCTGGATTGA

Protein sequence

MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADHAKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEDIGSFHFLD*

Homology

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BLAST of CsaV3_4G028020 vs. NCBI nr
Match: KAE8649617.1 (hypothetical protein Csa_011937 [Cucumis sativus])

HSP 1 Score: 398.7 bits (1023), Expect = 2.9e-107
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60
           MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60

Query: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 120
           AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK
Sbjct: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 120

Query: 121 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180
           LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE
Sbjct: 121 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180

Query: 181 DIGSFHFLD 190
           DIGSFHFLD
Sbjct: 181 DIGSFHFLD 189

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BLAST of CsaV3_4G028020 vs. NCBI nr
Match: XP_031740436.1 (LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1 [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 4.0e-101
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60
           MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60

Query: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 120
           AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK
Sbjct: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 120

Query: 121 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180
           LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE
Sbjct: 121 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180

[Close]

BLAST of CsaV3_4G028020 vs. NCBI nr
Match: XP_031745330.1 (LOW QUALITY PROTEIN: protein ECT2-like [Cucumis sativus])

HSP 1 Score: 370.5 bits (950), Expect = 8.4e-99
Identity = 176/180 (97.78%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60
           +LKPKPFAGANVFVSRNLVA EMFD  HDALKQNGAEVFLCCDPSQNAPNDYHVISSADH
Sbjct: 135 LLKPKPFAGANVFVSRNLVASEMFDPFHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 194

Query: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 120
           AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK
Sbjct: 195 AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 254

Query: 121 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180
           LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE
Sbjct: 255 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 314

[Close]

BLAST of CsaV3_4G028020 vs. NCBI nr
Match: KAA0052213.1 (DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 1.9e-98
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60
           MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPS+N PNDYHVISSADH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 120
            KFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEK EIGK
Sbjct: 61  EKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKAEIGK 120

Query: 121 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180
           LVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE
Sbjct: 121 LVSAMGGVLYTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180

[Close]

BLAST of CsaV3_4G028020 vs. NCBI nr
Match: XP_016899869.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo] >XP_016899870.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 369.4 bits (947), Expect = 1.9e-98
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60
           MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPS+N PNDYHVISSADH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 120
            KFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEK EIGK
Sbjct: 61  EKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKAEIGK 120

Query: 121 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180
           LVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE
Sbjct: 121 LVSAMGGVLYTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180

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BLAST of CsaV3_4G028020 vs. ExPASy Swiss-Prot
Match: Q800K6 (DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis OX=8355 GN=topbp1-A PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 9.0e-11
Identity = 43/176 (24.43%), Postives = 83/176 (47.16%), Query Frame = 0


Query: 22  EMFDALHDALKQNGAEVFLCCDPSQNA------PNDYHVISSADHAKFEDLRAKGCNLLG 81
           E F   ++A+KQ  ++  L     + A          ++      A F  L+  GC ++G
Sbjct: 21  EYFFKAYEAIKQIQSDESLQLTEEREALLLKEKDKSLYICDPFSGAAFSHLKKLGCRIVG 80

Query: 82  PQCVMSCAKEHRPLPQQGYTCC-LAMDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKAS 141
           PQ V+ C +  R +P+  Y    +AM  V I  +   ++ + ++   V  MGG ++   +
Sbjct: 81  PQVVIFCMENQRRVPRAEYPVYNMAMADVTISCTSLDKETREDVHHYVQIMGGCVYRDLN 140

Query: 142 LDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCW--IEHRVVPQEDIGSFHFL 189
           + V+ +IA    + KY  A ++ +KPI+  SW+++ W     R++   D+    +L
Sbjct: 141 VSVTHLIAGEVGSKKYLVAASL-EKPILLPSWVKELWEKSNQRIIRYSDVNMTEYL 195

[Close]

BLAST of CsaV3_4G028020 vs. ExPASy Swiss-Prot
Match: Q7ZZY3 (DNA topoisomerase 2-binding protein 1-B OS=Xenopus laevis OX=8355 GN=topbp1-B PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.8e-10
Identity = 36/131 (27.48%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCC-LAMDGVKILASGFQEDEKVEIG 120
           A F  L+  GC ++GPQ V+ C +  R +P+  Y    +AM  V I  +   ++ + ++ 
Sbjct: 66  AAFSHLKKLGCRIVGPQVVIFCMESQRRVPRAEYPVYNMAMADVTISCTSLDKETREDVH 125

Query: 121 KLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCW--IEHRVV 180
             V  MGG ++   ++ V+ +IA    + KY  A ++ +KPI+  SW+++ W     R++
Sbjct: 126 HYVQIMGGCVYRDLNVSVTHLIAGEVGSNKYLVAASL-EKPILLPSWVKELWEKSNQRII 185

Query: 181 PQEDIGSFHFL 189
              D+    +L
Sbjct: 186 RYSDVNMTEYL 195

[Close]

BLAST of CsaV3_4G028020 vs. ExPASy Swiss-Prot
Match: Q92547 (DNA topoisomerase 2-binding protein 1 OS=Homo sapiens OX=9606 GN=TOPBP1 PE=1 SV=3)

HSP 1 Score: 65.5 bits (158), Expect = 7.6e-10
Identity = 39/142 (27.46%), Postives = 71/142 (50.00%), Query Frame = 0


Query: 31  LKQNGAEVFLCCDPSQNAPNDYHVISSADHAKFEDLRAKGCNLLGPQCVMSCAKEHRPLP 90
           +K+N   +++ CDP                  F+ L+  GC ++GPQ V+ C    R +P
Sbjct: 50  IKENDRSLYI-CDPFSG-------------VVFDHLKKLGCRIVGPQVVIFCMHHQRCVP 109

Query: 91  QQGYTCC-LAMDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAK 150
           +  +    + M  V I  +  +++++ E+ K V  MGG ++   ++ V+ +IA    + K
Sbjct: 110 RAEHPVYNMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKK 169

Query: 151 YKWALNISKKPIVSFSWLQQCW 172
           Y  A N+ KKPI+  SW++  W
Sbjct: 170 YLVAANL-KKPILLPSWIKTLW 176

[Close]

BLAST of CsaV3_4G028020 vs. ExPASy TrEMBL
Match: A0A1S4DV57 (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 9.1e-99
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60
           MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPS+N PNDYHVISSADH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 120
            KFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEK EIGK
Sbjct: 61  EKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKAEIGK 120

Query: 121 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180
           LVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE
Sbjct: 121 LVSAMGGVLYTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180

[Close]

BLAST of CsaV3_4G028020 vs. ExPASy TrEMBL
Match: A0A1S4DV59 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 9.1e-99
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60
           MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPS+N PNDYHVISSADH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 120
            KFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEK EIGK
Sbjct: 61  EKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKAEIGK 120

Query: 121 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180
           LVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE
Sbjct: 121 LVSAMGGVLYTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180

[Close]

BLAST of CsaV3_4G028020 vs. ExPASy TrEMBL
Match: A0A5A7U8G5 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00240 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 9.1e-99
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60
           MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPS+N PNDYHVISSADH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 120
            KFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEK EIGK
Sbjct: 61  EKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKAEIGK 120

Query: 121 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180
           LVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE
Sbjct: 121 LVSAMGGVLYTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180

[Close]

BLAST of CsaV3_4G028020 vs. ExPASy TrEMBL
Match: A0A5D3BRP8 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00080 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 7.9e-95
Identity = 175/203 (86.21%), Postives = 177/203 (87.19%), Query Frame = 0


Query: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60
           MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPS+N PNDYHVISSADH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 61  AKFEDLRAKGCNLL-----------------------GPQCVMSCAKEHRPLPQQGYTCC 120
            KFEDLRAKGCNLL                       GPQCVMSCAKEHRPLPQQGYTCC
Sbjct: 61  EKFEDLRAKGCNLLGMVNLYPTPGTWCVADNLNFCWEGPQCVMSCAKEHRPLPQQGYTCC 120

Query: 121 LAMDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNIS 180
           LAMDGVKILASGFQEDEK EIGKLVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNIS
Sbjct: 121 LAMDGVKILASGFQEDEKAEIGKLVSAMGGVLYTKASLDVSFVIAKNALAAKYKWALNIS 180

[Close]

BLAST of CsaV3_4G028020 vs. ExPASy TrEMBL
Match: A0A6J1BWX2 (DNA topoisomerase 2-binding protein 1 OS=Momordica charantia OX=3673 GN=LOC111006393 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 164/180 (91.11%), Postives = 172/180 (95.56%), Query Frame = 0


Query: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60
           MLKPK FAGANVF+SRNLVAPE+FDA+HDALKQNGAEVFLCCDPS+N PNDYHVISSADH
Sbjct: 1   MLKPKTFAGANVFMSRNLVAPEIFDAVHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 61  AKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGK 120
            KFEDLRAKGCNLLGPQCV+SCAKEHRPLPQQG+TCCLAMDGVKILASGFQ DEKVEIGK
Sbjct: 61  EKFEDLRAKGCNLLGPQCVLSCAKEHRPLPQQGFTCCLAMDGVKILASGFQADEKVEIGK 120

Query: 121 LVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 180
           LV+AMGGVLHTKASLDVSFVI KN LAAKYKWALNISKKPIV+  WLQQCWIEHRVVPQE
Sbjct: 121 LVTAMGGVLHTKASLDVSFVIVKNVLAAKYKWALNISKKPIVTIGWLQQCWIEHRVVPQE 180

[Close]

BLAST of CsaV3_4G028020 vs. TAIR 10
Match: AT1G77320.1 (transcription coactivators )

HSP 1 Score: 271.9 bits (694), Expect = 3.8e-73
Identity = 124/174 (71.26%), Postives = 150/174 (86.21%), Query Frame = 0


Query: 7   FAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADHAKFEDL 66
           F GANVF+SRNLV PE+FD L DA K NGAE+FLCCDPS++ P+D+HVI+S DH KF+DL
Sbjct: 7   FKGANVFMSRNLVPPEVFDTLLDAFKLNGAEIFLCCDPSRSGPSDFHVIASPDHEKFKDL 66

Query: 67  RAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGKLVSAMG 126
           +AKGCNL+GPQC + CAKE RPLPQ+G+TCCLAMDG+K+LASGF  DEKV+I +LV++MG
Sbjct: 67  KAKGCNLIGPQCALFCAKEGRPLPQRGFTCCLAMDGLKVLASGFLVDEKVKIKELVTSMG 126

Query: 127 GVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 181
           GVL ++AS DV+FVI KN LAAKYKWALN  KKPIV+ +WL +CW EHRVVPQE
Sbjct: 127 GVLLSRASSDVNFVIVKNVLAAKYKWALN--KKPIVTLNWLHRCWNEHRVVPQE 178

[Close]

BLAST of CsaV3_4G028020 vs. TAIR 10
Match: AT1G77320.2 (transcription coactivators )

HSP 1 Score: 254.6 bits (649), Expect = 6.3e-68
Identity = 119/174 (68.39%), Postives = 144/174 (82.76%), Query Frame = 0


Query: 7   FAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADHAKFEDL 66
           F GANVF+SRNLV PE+FD L DA K NGAE+FLCCDPS++ P+D+       H KF+DL
Sbjct: 7   FKGANVFMSRNLVPPEVFDTLLDAFKLNGAEIFLCCDPSRSGPSDF-------HEKFKDL 66

Query: 67  RAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGKLVSAMG 126
           +AKGCNL+GPQC + CAKE RPLPQ+G+TCCLAMDG+K+LASGF  DEKV+I +LV++MG
Sbjct: 67  KAKGCNLIGPQCALFCAKEGRPLPQRGFTCCLAMDGLKVLASGFLVDEKVKIKELVTSMG 126

Query: 127 GVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE 181
           GVL ++AS DV+FVI KN LAAKYKWALN  KKPIV+ +WL +CW EHRVVPQE
Sbjct: 127 GVLLSRASSDVNFVIVKNVLAAKYKWALN--KKPIVTLNWLHRCWNEHRVVPQE 171

The following BLAST results are available for this feature:

BLAST of CsaV3_4G028020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649617.1	2.9e-107	100.00	hypothetical protein Csa_011937 [Cucumis sativus]	[more]
XP_031740436.1	4.0e-101	100.00	LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1 [Cucumis sativus]	[more]
XP_031745330.1	8.4e-99	97.78	LOW QUALITY PROTEIN: protein ECT2-like [Cucumis sativus]	[more]
KAA0052213.1	1.9e-98	97.22	DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_016899869.1	1.9e-98	97.22	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo] >XP_0...	[more]

BLAST of CsaV3_4G028020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q800K6	9.0e-11	24.43	DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis OX=8355 GN=topbp1-A PE...	[more]
Q7ZZY3	5.8e-10	27.48	DNA topoisomerase 2-binding protein 1-B OS=Xenopus laevis OX=8355 GN=topbp1-B PE...	[more]
Q92547	7.6e-10	27.46	DNA topoisomerase 2-binding protein 1 OS=Homo sapiens OX=9606 GN=TOPBP1 PE=1 SV=...	[more]

BLAST of CsaV3_4G028020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DV57	9.1e-99	97.22	DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S4DV59	9.1e-99	97.22	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7U8G5	9.1e-99	97.22	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3BRP8	7.9e-95	86.21	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1BWX2	1.5e-93	91.11	DNA topoisomerase 2-binding protein 1 OS=Momordica charantia OX=3673 GN=LOC11100...	[more]

BLAST of CsaV3_4G028020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77320.1	3.8e-73	71.26	transcription coactivators	[more]
AT1G77320.2	6.3e-68	68.39	transcription coactivators	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001357	BRCT domain	SMART	SM00292	BRCT_7	coord: 4..86 e-value: 200.0 score: 0.1 coord: 97..174 e-value: 2.3E-5 score: 33.8
IPR001357	BRCT domain	PFAM	PF12738	PTCB-BRCT	coord: 103..166 e-value: 3.7E-8 score: 33.2
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 100..184 score: 14.36894
IPR036420	BRCT domain superfamily	GENE3D	3.40.50.10190	BRCT domain	coord: 16..94 e-value: 4.3E-10 score: 41.3
IPR036420	BRCT domain superfamily	GENE3D	3.40.50.10190	BRCT domain	coord: 97..186 e-value: 8.9E-18 score: 66.4
IPR036420	BRCT domain superfamily	SUPERFAMILY	52113	BRCT domain	coord: 57..181
None	No IPR available	PANTHER	PTHR13561	DNA REPLICATION REGULATOR DPB11-RELATED	coord: 7..181
None	No IPR available	CDD	cd00027	BRCT	coord: 103..170 e-value: 4.18125E-12 score: 56.9864

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G028020.1	CsaV3_4G028020.1	mRNA