CsaV3_4G027620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G027620
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 16906501 .. 16906850 (+)
RNA-Seq ExpressionCsaV3_4G027620
SyntenyCsaV3_4G027620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGAGTATTATTCTCTATCATTGAACTATTGTAATTTCGTAATGTAATTTTTTGTTTGTTTGTTATTTTAAAGTTAAAGAAGTATTTATTAAATGCTAATTCTTTGTCACATGGCAGTGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

mRNA sequence

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Coding sequence (CDS)

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Protein sequence

MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCNNGR*
Homology
BLAST of CsaV3_4G027620 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 4.1e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 79
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

BLAST of CsaV3_4G027620 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-09
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

BLAST of CsaV3_4G027620 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          M ++KLF V  +V + F  FASS +GD    C+ PC +   D  C   C+  ++GAGFC 
Sbjct: 1  MASRKLFTVFAIVMMMF-YFASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCY 60

Query: 61 PKLPGISDMKVCCCNN 77
          PKLP +++ K CCCNN
Sbjct: 61 PKLPSVTNEKDCCCNN 75

BLAST of CsaV3_4G027620 vs. NCBI nr
Match: KAA0043464.1 (hypothetical protein E6C27_scaffold1167G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 5.7e-09
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          M T+KL +V + + V  +CF +  EG  LWNC+ PCS     + C   C   ++G G C+
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEGQGLWNCIRPCSETYKSLSCYVDCGALNKGTGACI 60

Query: 61 PKLPGISDMKVCCC 75
          PK P +SD  VCCC
Sbjct: 61 PKRP-VSDEYVCCC 73

BLAST of CsaV3_4G027620 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  VS+++ +  +C  S+ +GD L  NCV PCS+   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATVSIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

BLAST of CsaV3_4G027620 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 79
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

BLAST of CsaV3_4G027620 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.6e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

BLAST of CsaV3_4G027620 vs. ExPASy TrEMBL
Match: A0A5A7TJH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00010 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          M T+KL +V + + V  +CF +  EG  LWNC+ PCS     + C   C   ++G G C+
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEGQGLWNCIRPCSETYKSLSCYVDCGALNKGTGACI 60

Query: 61 PKLPGISDMKVCCC 75
          PK P +SD  VCCC
Sbjct: 61 PKRP-VSDEYVCCC 73

BLAST of CsaV3_4G027620 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.2e-09
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V V F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCNN 77
           PKLP  S  K CCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54497.14.1e-39100.00hypothetical protein Csa_012842 [Cucumis sativus][more]
KGN61228.11.2e-0950.00hypothetical protein Csa_006463 [Cucumis sativus][more]
KAG6586428.12.0e-0944.74hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0043464.15.7e-0941.89hypothetical protein E6C27_scaffold1167G00010 [Cucumis melo var. makuwa][more]
KAE8651697.11.3e-0848.68hypothetical protein Csa_006343 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L1R82.0e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
A0A0A0LHG95.6e-1050.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A5A7TJH12.8e-0941.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LJG56.2e-0948.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G027620.1CsaV3_4G027620.1mRNA