CsaV3_4G027550 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G027550
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionOxidoreductase
Locationchr4: 16728943 .. 16729842 (-)
RNA-Seq ExpressionCsaV3_4G027550
SyntenyCsaV3_4G027550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGGAGATACATGTAAGACCTGCAATCATCCACACTCAAGCAATTCCCTTTTTACCCCAAGGAGTAGAGGGAGTACGTTTCTGTTATGGATGTGGAGATCATTGGTGCTATGGATGTGGGGACCAGCGTGGAGGTTTATAAGGGGTTTTGAGGAAGAAATTGAGGGCGTGGGTTATTTGAGTTGAGACGACTAGTTGTACATGTCTTGAAGTTGTATCAATATATCGTGCTATCAGAGTGTGTATTACCTGTTTTTCTTATTTGTTGGGCATTACTGCGTGCATGATTACAATAGATGCCTATTAATAAGGATATAGTAGTAATTAACTAGGGACTTCTGGTTATAAATTGAGAGAGTGAGGGTTTGTGAGAGGTAATATTTTGGTGAATCAAACCGAAAGCTATTGATATTATTTTTAGTTTCTTTTGATTTGCAATATAATTTTTGTTTTTCATCTTGTTTGTACTTGGGATCTGAAAACATTCTTCCAGAGGGGCATCGCATGCATGGGCTAGTGCCTTTGCTTTCTTTCCAGTATTTTTTTTACTTCGAATATAGCTGGTGTACAACAAGTTCTACTTCTCCAAATTGTACGTTAAAGGCTTAAGGGGAAGTTCTTCAATCAATCAATTATTTCTCCTTTCGGATCTAAAACAATTTGATTTGAGGGGTTATCAACCCTTCTCCTCCTATGGAACCTATCCCTCTTACACATTCACGTTTTTACTCCGATGGAGATTTTGAAATAAGTTTGAGTAGTCTGCAGGCTGCAGCATTTTTGGAAGAAAGATTGTTCGAATATCCTTATCTTGTGGACTTATTTCCTGATGCTTTTGTGGCATCATTTAAAGATGATGTTCAAGATAATTTGACTGTGACTTCTCAACCTCATCGCTAG

mRNA sequence

GAGGAGATACATGTAAGACCTGCAATCATCCACACTCAAGCAATTCCCTTTTTACCCCAAGGAGTAGAGGGAGTACGTTTCTGTTATGGATGTGGAGATCATTGGTGCTATGGATGTGGGGACCAGCGTGGAGGGGTTATCAACCCTTCTCCTCCTATGGAACCTATCCCTCTTACACATTCACGTTTTTACTCCGATGGAGATTTTGAAATAAGTTTGAGTAGTCTGCAGGCTGCAGCATTTTTGGAAGAAAGATTGTTCGAATATCCTTATCTTGTGGACTTATTTCCTGATGCTTTTGTGGCATCATTTAAAGATGATGTTCAAGATAATTTGACTGTGACTTCTCAACCTCATCGCTA

Coding sequence (CDS)

GAGGAGATACATGTAAGACCTGCAATCATCCACACTCAAGCAATTCCCTTTTTACCCCAAGGAGTAGAGGGAGTACGTTTCTGTTATGGATGTGGAGATCATTGGTGCTATGGATGTGGGGACCAGCGTGGAGGGGTTATCAACCCTTCTCCTCCTATGGAACCTATCCCTCTTACACATTCACGTTTTTACTCCGATGGAGATTTTGAAATAAGTTTGAGTAGTCTGCAGGCTGCAGCATTTTTGGAAGAAAGATTGTTCGAATATCCTTATCTTGTGGACTTATTTCCTGATGCTTTTGTGGCATCATTTAAAGATGATGTTCAAGATAATTTGACTGTGACTTCTCAACCTCATCGCTA

Protein sequence

EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGDHWCYGCGDQRGGVINPSPPMEPIPLTHSRFYSDGDFEISLSSLQAAAFLEERLFEYPYLVDLFPDAFVASFKDDVQDNLTVTSQPHRX
Homology
[Close]
BLAST of CsaV3_4G027550 vs. NCBI nr
Match: KAE8649603.1 (hypothetical protein Csa_023767, partial [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 3.5e-66
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGDHWCYGCGDQRGGVINPSPPMEPIPLTH 60
           EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGDHWCYGCGDQRGGVINPSPPMEPIPLTH
Sbjct: 1   EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGDHWCYGCGDQRGGVINPSPPMEPIPLTH 60

Query: 61  SRFYSDGDFEISLSSLQAAAFLEERLFEYPYLVDLFPDAFVASFKDDVQDNLTVTSQPHR 120
           SRFYSDGDFEISLSSLQAAAFLEERLFEYPYLVDLFPDAFVASFKDDVQDNLTVTSQPHR
Sbjct: 61  SRFYSDGDFEISLSSLQAAAFLEERLFEYPYLVDLFPDAFVASFKDDVQDNLTVTSQPHR 120

[Close]
BLAST of CsaV3_4G027550 vs. ExPASy TrEMBL
Match: A0A0A0L305 (Oxidoreductase OS=Cucumis sativus OX=3659 GN=Csa_4G337920 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.2e-21
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 1   EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGDHWCYGCGDQRGGV 47
           EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGDHWCYGCGDQRGG+
Sbjct: 257 EEIHVRPAIIHTQAIPFLPQGVEGVRFCYGCGDHWCYGCGDQRGGL 302

The following BLAST results are available for this feature:
BLAST of CsaV3_4G027550 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649603.13.5e-66100.00hypothetical protein Csa_023767, partial [Cucumis sativus][more]
BLAST of CsaV3_4G027550 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G027550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3058.2e-2197.83Oxidoreductase OS=Cucumis sativus OX=3659 GN=Csa_4G337920 PE=4 SV=1[more]
BLAST of CsaV3_4G027550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G027550.1CsaV3_4G027550.1mRNA