CsaV3_4G027500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G027500
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 16645737 .. 16645943 (-)
RNA-Seq ExpressionCsaV3_4G027500
SyntenyCsaV3_4G027500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAGCGCATACCGTGTAGATCAAATAAACAAAAGAAGAAAAAGAAAACTCAAGCAAAATGGGAACAATAATATACAAAGAAAAAATGCATTTGGTAGTGGTTCTCTTACTTCTGTTGGTGGCTATGGCTGTGGTTCAGCCGTGCACGGCGGTTCCACTACCACTCCCAAAGTGGCGTATTCATGTGGTAAATGGGTTGGAGAGTGA

mRNA sequence

GAGAGCGCATACCGTGTAGATCAAATAAACAAAAGAAGAAAAAGAAAACTCAAGCAAAATGGGAACAATAATATACAAAGAAAAAATGCATTTGGTAGTGGTTCTCTTACTTCTGTTGGTGGCTATGGCTGTGGTTCAGCCGTGCACGGCGGTTCCACTACCACTCCCAAAGTGGCGTATTCATGTGGTAAATGGGTTGGAGAGTGA

Coding sequence (CDS)

GAGAGCGCATACCGTGTAGATCAAATAAACAAAAGAAGAAAAAGAAAACTCAAGCAAAATGGGAACAATAATATACAAAGAAAAAATGCATTTGGTAGTGGTTCTCTTACTTCTGTTGGTGGCTATGGCTGTGGTTCAGCCGTGCACGGCGGTTCCACTACCACTCCCAAAGTGGCGTATTCATGTGGTAAATGGGTTGGAGAGTGA

Protein sequence

ESAYRVDQINKRRKRKLKQNGNNNIQRKNAFGSGSLTSVGGYGCGSAVHGGSTTTPKVAYSCGKWVGE*
Homology
[Close]
BLAST of CsaV3_4G027500 vs. NCBI nr
Match: KAE8649600.1 (hypothetical protein Csa_012108, partial [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 9.7e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  ESAYRVDQINKRRKRKLKQNGNNNIQRKNAFGSGSLTSVGGYGCGSAVHGGSTTTPKVAY 60
          ESAYRVDQINKRRKRKLKQNGNNNIQRKNAFGSGSLTSVGGYGCGSAVHGGSTTTPKVAY
Sbjct: 1  ESAYRVDQINKRRKRKLKQNGNNNIQRKNAFGSGSLTSVGGYGCGSAVHGGSTTTPKVAY 60

Query: 61 SCGKWVGE 69
          SCGKWVGE
Sbjct: 61 SCGKWVGE 68

The following BLAST results are available for this feature:
BLAST of CsaV3_4G027500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649600.19.7e-29100.00hypothetical protein Csa_012108, partial [Cucumis sativus][more]
BLAST of CsaV3_4G027500 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G027500 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G027500 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G027500.1CsaV3_4G027500.1mRNA