CsaV3_4G027160 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G027160
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Non-specific lipid-transfer protein
Location	chr4: 16334416 .. 16335914 (+)
RNA-Seq Expression	CsaV3_4G027160
Synteny	CsaV3_4G027160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACATACAAACGTTAGTAGGTGGCGTTTTAAAACTATCACCAACCAATCGAAAGCTGCATTTATCACCGCCAAACCTACCAATCCCATCCCCCATTCATTTTCCATTCTATTTAAACTCCCCAAGCTCTCCCACTTCACACTCAAACTCATCTTACAAACTCCTTCAAATTTCTATTTACTTTTCGTAAACACATCATGGCGAGTAACTTAATCACGATTCTAAAGTTGGGTTTGACAGTAACATTTCTCTACGCCGTGATAGGTGGAGGGGTGACGACAGAGGCAGTCGTATCGTGCAACCAAGTGATCACCAATTTGCGTCCATGTGTTTCGTACGTGACGGGCGGAGGATACCCGTCGTCTAACTGTTGCAGTGGTGTGAAACAGTTGAGCACGGCAGCTCGCACAACGCCGGATAGACAGGCGGTATGTCGATGCTTGAAATCATTGGTGAATGGCGTTAAGTATAATGGCCAAAATGTTGCTAATGCTGCTGCTCTTCCGACCAAGTGTGGCGTCACTCTTCCCTACTCTATCAACCCCAATGTTGACTGTAACACGTAATATATTTCTCTCTCTCTCAAAATTTTTACTTTATATGATCTTTTTATTTGAGACTAAGTCTTGAGTACAGTTTTCATTTTGTTCATATTTTCAACTATGCATCTTGAGTTTAATTTTCACTTATTCACTTTTACATTTTGTTCATATTTTCAACTCTTCATGTACATTTTTTTAATTATTTGGTTCCATAAAGTTTCAAAAGTTTACCTTTTCACTCTTTACTATGTTAATATTAATGCTCCCTTTATTATTGTGCTTAACTTTTAGATAACAAAACAATGAAAAATGAAAAGTTCACACTAATCCTAGATTATAAATATTTCAATGTCTTTAAATTAATTGTGATAAAATATCGAACATAAATGTGTAGAATGAAAACTTAAACAAAAATGTAAAACTTTTAAATCAAAATACCAAATAAAAACTTTAATTCAAAAGTAAGAAAATTGTAATATTTTAATAGTCAAAGATCAAGTAAATAACTATACTCAAAATTCATAAAATGAACAACTTAAAATATTGTTTGAAAATGTTACTCAAAACTCAACCATTTTTTTCTTATTTTGTACTTATTAACTTTATTTTAGTTTAAGAAGGTTCTAAGTAATTTACGTGGGAATTATTATTATTTTGCAGCATTAAAATGTGAGGAAAATCAAGCAGCAACACTACACGACGAGGTCGTATCGCTGGAAGAATAAATGGGGAGATTAGCATTTTGCTATGAACAAATTATGAACTTTATTTTGTAATATTATCTACTTGAAAACCACCCTTTGTACTTGGGTTTATGGTTAGAATTTAAATTTATATAAATATATGTTAGTGTTTACTTAAAAATTTGTGTGAATTTTAATTTATAACATGTGTGTTTTAGAACTATTTATTCTTCAAAATGATTCTCACATTAATTTTAATATAGATCAATTGGAA

mRNA sequence

ATGGCGAGTAACTTAATCACGATTCTAAAGTTGGGTTTGACAGTAACATTTCTCTACGCCGTGATAGGTGGAGGGGTGACGACAGAGGCAGTCGTATCGTGCAACCAAGTGATCACCAATTTGCGTCCATGTGTTTCGTACGTGACGGGCGGAGGATACCCGTCGTCTAACTGTTGCAGTGGTGTGAAACAGTTGAGCACGGCAGCTCGCACAACGCCGGATAGACAGGCGGTATGTCGATGCTTGAAATCATTGGTGAATGGCGTTAAGTATAATGGCCAAAATGTTGCTAATGCTGCTGCTCTTCCGACCAAGTGTGGCGTCACTCTTCCCTACTCTATCAACCCCAATGTTGACTGTAACACCATTAAAATGTGA

Coding sequence (CDS)

ATGGCGAGTAACTTAATCACGATTCTAAAGTTGGGTTTGACAGTAACATTTCTCTACGCCGTGATAGGTGGAGGGGTGACGACAGAGGCAGTCGTATCGTGCAACCAAGTGATCACCAATTTGCGTCCATGTGTTTCGTACGTGACGGGCGGAGGATACCCGTCGTCTAACTGTTGCAGTGGTGTGAAACAGTTGAGCACGGCAGCTCGCACAACGCCGGATAGACAGGCGGTATGTCGATGCTTGAAATCATTGGTGAATGGCGTTAAGTATAATGGCCAAAATGTTGCTAATGCTGCTGCTCTTCCGACCAAGTGTGGCGTCACTCTTCCCTACTCTATCAACCCCAATGTTGACTGTAACACCATTAAAATGTGA

Protein sequence

MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCSGVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDCNTIKM*

Homology

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BLAST of CsaV3_4G027160 vs. NCBI nr
Match: XP_004151695.1 (non-specific lipid-transfer protein 1 [Cucumis sativus] >KGN54448.1 hypothetical protein Csa_012253 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60
           MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS
Sbjct: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60

Query: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120
           GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC
Sbjct: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120

Query: 121 NTIKM 126
           NTIKM
Sbjct: 121 NTIKM 125

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BLAST of CsaV3_4G027160 vs. NCBI nr
Match: XP_008463259.1 (PREDICTED: non-specific lipid-transfer protein 1-like [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 105/125 (84.00%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60
           MASNLITILKLGLTVT LYAVIGGGVTTEA V+CNQV++NL PC+SYVTGGG PS NCCS
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120
           GV+QL+ AA+TTPDRQ VCRCLKSL+NGV YNGQNVANAAALPTKCGV LPY+INPN DC
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 121 NTIKM 126
           +TIKM
Sbjct: 121 STIKM 125

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BLAST of CsaV3_4G027160 vs. NCBI nr
Match: KAA0025399.1 (non-specific lipid-transfer protein 1-like [Cucumis melo var. makuwa] >TYK09774.1 non-specific lipid-transfer protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 214.2 bits (544), Expect = 6.7e-52
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60
           MASNLITILKLGLTVT LYAVIGGGVTTEA V+CNQV++NL PC+SYVTGGG PS NCCS
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120
           GV+QL+ AA+TTPDRQ VCRCLKSL+NGV YNGQNVANAAALPTKCGV LPY+INPN DC
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 121 NT 123
           +T
Sbjct: 121 ST 122

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BLAST of CsaV3_4G027160 vs. NCBI nr
Match: XP_038883886.1 (non-specific lipid-transfer protein 1-like [Benincasa hispida])

HSP 1 Score: 199.1 bits (505), Expect = 2.2e-47
Identity = 96/125 (76.80%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60
           MASNLI  +KLGL +TFL  VIGG V TEAVV+CNQVI+NL PCV +VTGGG PS NCCS
Sbjct: 1   MASNLIGNVKLGLIITFLCTVIGGRVMTEAVVTCNQVISNLNPCVQFVTGGGAPSGNCCS 60

Query: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120
           GV+QL   A+TTPDRQAVCRCLKS+VNGV+Y+G+NVANAAALP+KCGV LPY+I+PNVDC
Sbjct: 61  GVRQLFALAQTTPDRQAVCRCLKSVVNGVRYSGKNVANAAALPSKCGVQLPYAIDPNVDC 120

Query: 121 NTIKM 126
           NTIKM
Sbjct: 121 NTIKM 125

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BLAST of CsaV3_4G027160 vs. NCBI nr
Match: XP_023518220.1 (non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.5 bits (389), Expect = 6.3e-34
Identity = 74/124 (59.68%), Postives = 94/124 (75.81%), Query Frame = 0


Query: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60
           MASN +  +K+GL V  +  +I GG  +EA V+CNQV+++L  CVSYVTGGG PS+ CCS
Sbjct: 1   MASNGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCS 60

Query: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120
           GV+ L+  A T  DRQAVC CL+SLV GV YN Q +ANAAALP+KCGV LPY I+P +DC
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPSKCGVKLPYKIDPRIDC 120

Query: 121 NTIK 125
           +TI+
Sbjct: 121 STIR 124

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BLAST of CsaV3_4G027160 vs. ExPASy Swiss-Prot
Match: Q43019 (Non-specific lipid-transfer protein 3 OS=Prunus dulcis OX=3755 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-27
Identity = 56/117 (47.86%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 8   ILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCSGVKQLST 67
           +LKL   V  +  +  GG    A VSC QV+ NL PC++YV  GG  + +CC+GV+ L +
Sbjct: 7   LLKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYS 66

Query: 68  AARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDCNTIK 125
            A+TT DRQ++C CLK  VNG+ Y   N   AA LP KCGV +PY I+P+ DC +IK
Sbjct: 67  LAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123

[Close]

BLAST of CsaV3_4G027160 vs. ExPASy Swiss-Prot
Match: Q39950 (Non-specific lipid-transfer protein OS=Helianthus annuus OX=4232 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-24
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60
           MA   + +L  G+T      ++ G   TEA +SC QV ++L PC+SY+T GG     CCS
Sbjct: 1   MAKMAMMVLCAGVT-----CMVVGAPYTEA-LSCGQVSSSLAPCISYLTKGGAVPPACCS 60

Query: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120
           GVK L++AA+TTPDRQA C CLKS  N +  +G N  NAA+ P KCGV++PY I+P+ DC
Sbjct: 61  GVKSLNSAAKTTPDRQAACGCLKSAYNSI--SGVNAGNAASFPGKCGVSIPYKISPSTDC 116

Query: 121 NTIK 125
           + ++
Sbjct: 121 SKVQ 116

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BLAST of CsaV3_4G027160 vs. ExPASy Swiss-Prot
Match: Q7XJ39 (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica OX=39947 GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-24
Identity = 48/103 (46.60%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 21  VIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCSGVKQLSTAARTTPDRQAVCR 80
           ++ G  TT A +SC QV + + PC+SY  GG  PS+ CCSGV+ L++AA TT DR+  C 
Sbjct: 17  LLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACN 76

Query: 81  CLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDCNTI 124
           CLK++   +  +G N  NAA++P+KCGV++PY+I+P++DC+++
Sbjct: 77  CLKNVAGSI--SGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117

[Close]

BLAST of CsaV3_4G027160 vs. ExPASy Swiss-Prot
Match: Q2QYL2 (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica OX=39947 GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-24
Identity = 48/103 (46.60%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 21  VIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCSGVKQLSTAARTTPDRQAVCR 80
           ++ G  TT A +SC QV + + PC+SY  GG  PS+ CCSGV+ L++AA TT DR+  C 
Sbjct: 16  LLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACN 75

Query: 81  CLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDCNTI 124
           CLK++   +  +G N  NAA++P+KCGV++PY+I+P++DC+++
Sbjct: 76  CLKNVAGSI--SGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116

[Close]

BLAST of CsaV3_4G027160 vs. ExPASy Swiss-Prot
Match: A2ZAT0 (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-24
Identity = 48/103 (46.60%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 21  VIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCSGVKQLSTAARTTPDRQAVCR 80
           ++ G  TT A +SC QV + + PC+SY  GG  PS+ CCSGV+ L++AA TT DR+  C 
Sbjct: 17  LLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACN 76

Query: 81  CLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDCNTI 124
           CLK++   +  +G N  NAA++P+KCGV++PY+I+P++DC+++
Sbjct: 77  CLKNVAGSI--SGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117

[Close]

BLAST of CsaV3_4G027160 vs. ExPASy TrEMBL
Match: A0A0A0KY77 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_4G333620 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.3e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60
           MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS
Sbjct: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60

Query: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120
           GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC
Sbjct: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120

Query: 121 NTIKM 126
           NTIKM
Sbjct: 121 NTIKM 125

[Close]

BLAST of CsaV3_4G027160 vs. ExPASy TrEMBL
Match: A0A1S3CIS8 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103501462 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.9e-54
Identity = 105/125 (84.00%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60
           MASNLITILKLGLTVT LYAVIGGGVTTEA V+CNQV++NL PC+SYVTGGG PS NCCS
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120
           GV+QL+ AA+TTPDRQ VCRCLKSL+NGV YNGQNVANAAALPTKCGV LPY+INPN DC
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 121 NTIKM 126
           +TIKM
Sbjct: 121 STIKM 125

[Close]

BLAST of CsaV3_4G027160 vs. ExPASy TrEMBL
Match: A0A5D3CEZ6 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00580 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60
           MASNLITILKLGLTVT LYAVIGGGVTTEA V+CNQV++NL PC+SYVTGGG PS NCCS
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120
           GV+QL+ AA+TTPDRQ VCRCLKSL+NGV YNGQNVANAAALPTKCGV LPY+INPN DC
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 121 NT 123
           +T
Sbjct: 121 ST 122

[Close]

BLAST of CsaV3_4G027160 vs. ExPASy TrEMBL
Match: A0A6J1HTX7 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111466126 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.4e-33
Identity = 72/124 (58.06%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60
           MAS+ +  +K+GL V  +  +I GG  +EA V+CNQV+++L  CVSYVTGGG PS+ CCS
Sbjct: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGAPSATCCS 60

Query: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120
           GV+ L+  A T  DRQAVC CL+SLV GV YN Q +ANAAALP +CGV LPY I+P +DC
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPARCGVKLPYKIDPRIDC 120

Query: 121 NTIK 125
           +TI+
Sbjct: 121 STIR 124

[Close]

BLAST of CsaV3_4G027160 vs. ExPASy TrEMBL
Match: A0A6J1EBM4 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111432531 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.4e-33
Identity = 73/124 (58.87%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60
           MAS+ +  +K+GL V  +  +I GG  +EA V+CNQV+++L  CVSYVTGGG PS+ CCS
Sbjct: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCS 60

Query: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120
           GV+ L+  A T  DRQAVC CL+SLV GV YN Q +ANAAALP KCGV LPY I+P  DC
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120

Query: 121 NTIK 125
           +TI+
Sbjct: 121 STIR 124

[Close]

BLAST of CsaV3_4G027160 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 )

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-24
Identity = 48/96 (50.00%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 29  EAVVSCNQVITNLRPCVSYVTGGGYPSSNCCSGVKQLSTAARTTPDRQAVCRCLKSLVNG 88
           EA VSCN VI +L PC+SYVT GG   + CC+G+  L + A+T+ DRQ VCRC+KS + G
Sbjct: 18  EAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGG 77

Query: 89  VKYNGQNVANAAALPTKCGVTLPYSINPNVDCNTIK 125
           +  + + + NA  LP+KCGV LPY  +P+ DC++I+
Sbjct: 78  LTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113

[Close]

BLAST of CsaV3_4G027160 vs. TAIR 10
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-24
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 28  TEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCSGVKQLSTAARTTPDRQAVCRCLKSLVN 87
           +EA +SCN V  NL PCV YV  GG    +CC+G++ LS  A +  D+Q VCRC+KS+V 
Sbjct: 20  SEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVG 79

Query: 88  GVKYNGQNVANAAALPTKCGVTLPYSINPNVDCNTIK 125
            V Y+   +  AAALP KCGV LPY I+P+ +CN+IK
Sbjct: 80  RVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116

[Close]

BLAST of CsaV3_4G027160 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 )

HSP 1 Score: 107.5 bits (267), Expect = 8.2e-24
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 29  EAVVSCNQVITNLRPCVSYVTGGGYPSSNCCSGVKQLSTAARTTPDRQAVCRCLKSLVNG 88
           EA VSCN VI +L PC+SYVT GG   + CC+G+  L + A+T+ DRQ VCRC+KS + G
Sbjct: 18  EAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGG 77

Query: 89  VKYNGQNVANAAALPTKCGVTLPYSINPNVDCNT 123
           +  + + + NA  LP+KCGV LPY  +P+ DC++
Sbjct: 78  LTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDS 111

[Close]

BLAST of CsaV3_4G027160 vs. TAIR 10
Match: AT5G59320.1 (lipid transfer protein 3 )

HSP 1 Score: 98.2 bits (243), Expect = 5.0e-21
Identity = 43/98 (43.88%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 27  TTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCSGVKQLSTAARTTPDRQAVCRCLKSLV 86
           + +A +SC  V  +L PC +Y++ GG    +CC+GVK L++ A+TTPDRQ  CRC++S  
Sbjct: 20  SVDAAISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTA 79

Query: 87  NGVKYNGQNVANAAALPTKCGVTLPYSINPNVDCNTIK 125
             +  +G N + A+ LP KCGV++PY I+ + +CN IK
Sbjct: 80  KSI--SGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115

[Close]

BLAST of CsaV3_4G027160 vs. TAIR 10
Match: AT2G38540.1 (lipid transfer protein 1 )

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-21
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 21  VIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCSGVKQLSTAARTTPDRQAVCR 80
           ++ G +T+ A +SC  V +NL  C+ YV  GG     CCSGVK L++ A+TTPDRQ  C 
Sbjct: 16  IVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACN 75

Query: 81  CLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDCNTIK 125
           C++     +  +G N   AA +P  CGV +PY I+ + +C T++
Sbjct: 76  CIQGAARALG-SGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118

The following BLAST results are available for this feature:

BLAST of CsaV3_4G027160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151695.1	1.3e-63	100.00	non-specific lipid-transfer protein 1 [Cucumis sativus] >KGN54448.1 hypothetical...	[more]
XP_008463259.1	1.2e-53	84.00	PREDICTED: non-specific lipid-transfer protein 1-like [Cucumis melo]	[more]
KAA0025399.1	6.7e-52	83.61	non-specific lipid-transfer protein 1-like [Cucumis melo var. makuwa] >TYK09774....	[more]
XP_038883886.1	2.2e-47	76.80	non-specific lipid-transfer protein 1-like [Benincasa hispida]	[more]
XP_023518220.1	6.3e-34	59.68	non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_4G027160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43019	3.5e-27	47.86	Non-specific lipid-transfer protein 3 OS=Prunus dulcis OX=3755 PE=2 SV=1	[more]
Q39950	1.2e-24	47.58	Non-specific lipid-transfer protein OS=Helianthus annuus OX=4232 PE=3 SV=1	[more]
Q7XJ39	3.6e-24	46.60	Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q2QYL2	3.6e-24	46.60	Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
A2ZAT0	3.6e-24	46.60	Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]

BLAST of CsaV3_4G027160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY77	6.3e-64	100.00	Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_4G333620 P...	[more]
A0A1S3CIS8	5.9e-54	84.00	Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103501462 PE=3...	[more]
A0A5D3CEZ6	3.2e-52	83.61	Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1HTX7	3.4e-33	58.06	Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111466126 ...	[more]
A0A6J1EBM4	3.4e-33	58.87	Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC11143253...	[more]

BLAST of CsaV3_4G027160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08770.1	1.7e-24	50.00	lipid transfer protein 6	[more]
AT5G01870.1	1.7e-24	51.55	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G08770.2	8.2e-24	50.00	lipid transfer protein 6	[more]
AT5G59320.1	5.0e-21	43.88	lipid transfer protein 3	[more]
AT2G38540.1	8.5e-21	40.38	lipid transfer protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 111..122 score: 44.1 coord: 53..67 score: 43.79 coord: 74..89 score: 46.63 coord: 93..110 score: 45.56 coord: 33..49 score: 43.44
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 8..122
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 34..120 e-value: 5.3E-15 score: 65.8
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 34..120 e-value: 1.8E-10 score: 41.1
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 31..125 e-value: 3.2E-30 score: 106.4
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 32..123
None	No IPR available	PANTHER	PTHR33076:SF50	NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED	coord: 8..122
None	No IPR available	CDD	cd01960	nsLTP1	coord: 32..121 e-value: 2.78996E-36 score: 117.451

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G027160.1	CsaV3_4G027160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding