CsaV3_4G026930 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G026930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	wound-induced protein 1
Location	chr4: 15999159 .. 15999665 (+)
RNA-Seq Expression	CsaV3_4G026930
Synteny	CsaV3_4G026930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCATTTCCACTTCATCAGCCCACATCCTCAAACATACCCAAATCGCCCTCTCAGAAACAGAGCAACGAAACAGAGCAACCGCCGAAACCCTCTACAAATCCCTCGCCACCGGCCGTACTCATGCCGTCGCCAAGTTCCTCGCCCCAGACCTGGAGTGGTGGTTCCACGGCCCGCCGCATTGCCAGTACATGATGCGTGTCCTAACTGGCGACTCGAGCCACGGCGAGTTCCGATTTGAGCCGAGGAGCATAACGGCGATTGGCGACTCTGTTGTTGTGGCGGAAGGCTGGGAAGGAGCTCAGGTGTATTGGGTTCATGTTTGGACGTTGAAAGATGGACTGATTACGCAATTTAGAGAGTATTTTAATACGTGGCTTGTTGTGACAGATCTCCGGCAGCCAGCTTGGGAGGAGATCCGCCACGATGGGCTGACAGTGTGGCGGAGCCAACCTCGGGATCTGTTTCACCGATCGCTGCCGGCGATTGTGTTAGCTCTGTAG

mRNA sequence

ATGGATTCCATTTCCACTTCATCAGCCCACATCCTCAAACATACCCAAATCGCCCTCTCAGAAACAGAGCAACGAAACAGAGCAACCGCCGAAACCCTCTACAAATCCCTCGCCACCGGCCGTACTCATGCCGTCGCCAAGTTCCTCGCCCCAGACCTGGAGTGGTGGTTCCACGGCCCGCCGCATTGCCAGTACATGATGCGTGTCCTAACTGGCGACTCGAGCCACGGCGAGTTCCGATTTGAGCCGAGGAGCATAACGGCGATTGGCGACTCTGTTGTTGTGGCGGAAGGCTGGGAAGGAGCTCAGCCAGCTTGGGAGGAGATCCGCCACGATGGGCTGACAGTGTGGCGGAGCCAACCTCGGGATCTGTTTCACCGATCGCTGCCGGCGATTGTGTTAGCTCTGTAG

Coding sequence (CDS)

ATGGATTCCATTTCCACTTCATCAGCCCACATCCTCAAACATACCCAAATCGCCCTCTCAGAAACAGAGCAACGAAACAGAGCAACCGCCGAAACCCTCTACAAATCCCTCGCCACCGGCCGTACTCATGCCGTCGCCAAGTTCCTCGCCCCAGACCTGGAGTGGTGGTTCCACGGCCCGCCGCATTGCCAGTACATGATGCGTGTCCTAACTGGCGACTCGAGCCACGGCGAGTTCCGATTTGAGCCGAGGAGCATAACGGCGATTGGCGACTCTGTTGTTGTGGCGGAAGGCTGGGAAGGAGCTCAGCCAGCTTGGGAGGAGATCCGCCACGATGGGCTGACAGTGTGGCGGAGCCAACCTCGGGATCTGTTTCACCGATCGCTGCCGGCGATTGTGTTAGCTCTGTAG

Protein sequence

MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGPPHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGAQPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL*

Homology

[Close]

BLAST of CsaV3_4G026930 vs. NCBI nr
Match: KAE8649583.1 (hypothetical protein Csa_012333 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 4.4e-73
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP 60
           MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP
Sbjct: 1   MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP 60

Query: 61  PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGAQPAWEEIRHDGLTVWRSQ 120
           PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGAQPAWEEIRHDGLTVWRSQ
Sbjct: 61  PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGAQPAWEEIRHDGLTVWRSQ 120

Query: 121 PRDLFHRSLPAIVLAL 137
           PRDLFHRSLPAIVLAL
Sbjct: 121 PRDLFHRSLPAIVLAL 136

[Close]

BLAST of CsaV3_4G026930 vs. NCBI nr
Match: XP_004149930.1 (senescence associated gene 20 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 4.2e-68
Identity = 136/168 (80.95%), Postives = 136/168 (80.95%), Query Frame = 0


Query: 1   MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP 60
           MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP
Sbjct: 1   MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP 60

Query: 61  PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGA------------------ 120
           PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGA                  
Sbjct: 61  PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGAQVYWVHVWTLKDGLITQF 120

Query: 121 --------------QPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL 137
                         QPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL
Sbjct: 121 REYFNTWLVVTDLRQPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL 168

[Close]

BLAST of CsaV3_4G026930 vs. NCBI nr
Match: XP_008464249.1 (PREDICTED: wound-induced protein 1 [Cucumis melo] >KAA0065331.1 wound-induced protein 1 [Cucumis melo var. makuwa] >TYK10970.1 wound-induced protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-63
Identity = 125/168 (74.40%), Postives = 130/168 (77.38%), Query Frame = 0


Query: 1   MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP 60
           MDS S SS HI+KHTQI LSETEQRNRATAETLYKSLA GRTHAVAKFLA DLEWWFHGP
Sbjct: 1   MDSTSISSTHIIKHTQITLSETEQRNRATAETLYKSLAAGRTHAVAKFLAADLEWWFHGP 60

Query: 61  PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGA------------------ 120
           PHCQYMMR+LTG+SSHGEFRFEPRSITAIGDSV+VAEGWEGA                  
Sbjct: 61  PHCQYMMRILTGESSHGEFRFEPRSITAIGDSVIVAEGWEGAQVYWVHVWTLKDGLITQF 120

Query: 121 --------------QPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL 137
                         QPAWEEIRHDG+TVWRSQPRDLFHRSLPAIVLAL
Sbjct: 121 REYFNTWLVVTDLRQPAWEEIRHDGMTVWRSQPRDLFHRSLPAIVLAL 168

[Close]

BLAST of CsaV3_4G026930 vs. NCBI nr
Match: XP_038883007.1 (wound-induced protein 1 [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 7.5e-57
Identity = 115/168 (68.45%), Postives = 124/168 (73.81%), Query Frame = 0


Query: 1   MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP 60
           MDS S S+ HILKH++I  SE EQ+NRATAE LYKSLA GRT AVAKFLA DLEWWFHGP
Sbjct: 23  MDSTSPSTTHILKHSEITHSEAEQQNRATAEALYKSLAAGRTDAVAKFLAGDLEWWFHGP 82

Query: 61  PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGA------------------ 120
           PHCQYMMRVLTG+SSHGEFRFEPRSITAIGDSV+VAEGWEGA                  
Sbjct: 83  PHCQYMMRVLTGESSHGEFRFEPRSITAIGDSVIVAEGWEGAQVYWVHVWTLKDGLITQF 142

Query: 121 --------------QPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL 137
                         QPAW+E+RHDGLTVW+S PRDL HRSLPAIVLAL
Sbjct: 143 REYFNTWLVVTDLRQPAWQEVRHDGLTVWQSHPRDLLHRSLPAIVLAL 190

[Close]

BLAST of CsaV3_4G026930 vs. NCBI nr
Match: XP_022978301.1 (wound-induced protein 1 [Cucurbita maxima])

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-53
Identity = 113/169 (66.86%), Postives = 125/169 (73.96%), Query Frame = 0


Query: 1   MDSISTSSAHILKHTQIALS-ETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHG 60
           MDS STS+ HILKH++I  S ++E +NRATA+ LYKSLA GRT AVAKFLA DLEWWFHG
Sbjct: 1   MDSTSTST-HILKHSEITHSTDSEHQNRATADALYKSLAAGRTDAVAKFLATDLEWWFHG 60

Query: 61  PPHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGA----------------- 120
           PPHCQYMMRVLTG+SSH EFRFEPRSITAIGDSV+VAEGWEGA                 
Sbjct: 61  PPHCQYMMRVLTGESSHAEFRFEPRSITAIGDSVIVAEGWEGAQVYWVHVWTLKDGVITQ 120

Query: 121 ---------------QPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL 137
                          QPAWEE+RHDGLTVW+S PRDLFHRSLPAI+LAL
Sbjct: 121 FREYFNTWLVVADLRQPAWEEVRHDGLTVWQSHPRDLFHRSLPAIMLAL 168

[Close]

BLAST of CsaV3_4G026930 vs. ExPASy TrEMBL
Match: A0A0A0L1G7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G325520 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68
Identity = 136/168 (80.95%), Postives = 136/168 (80.95%), Query Frame = 0


Query: 1   MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP 60
           MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP
Sbjct: 1   MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP 60

Query: 61  PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGA------------------ 120
           PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGA                  
Sbjct: 61  PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGAQVYWVHVWTLKDGLITQF 120

Query: 121 --------------QPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL 137
                         QPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL
Sbjct: 121 REYFNTWLVVTDLRQPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL 168

[Close]

BLAST of CsaV3_4G026930 vs. ExPASy TrEMBL
Match: A0A5D3CHY0 (Wound-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00580 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 125/168 (74.40%), Postives = 130/168 (77.38%), Query Frame = 0


Query: 1   MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP 60
           MDS S SS HI+KHTQI LSETEQRNRATAETLYKSLA GRTHAVAKFLA DLEWWFHGP
Sbjct: 1   MDSTSISSTHIIKHTQITLSETEQRNRATAETLYKSLAAGRTHAVAKFLAADLEWWFHGP 60

Query: 61  PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGA------------------ 120
           PHCQYMMR+LTG+SSHGEFRFEPRSITAIGDSV+VAEGWEGA                  
Sbjct: 61  PHCQYMMRILTGESSHGEFRFEPRSITAIGDSVIVAEGWEGAQVYWVHVWTLKDGLITQF 120

Query: 121 --------------QPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL 137
                         QPAWEEIRHDG+TVWRSQPRDLFHRSLPAIVLAL
Sbjct: 121 REYFNTWLVVTDLRQPAWEEIRHDGMTVWRSQPRDLFHRSLPAIVLAL 168

[Close]

BLAST of CsaV3_4G026930 vs. ExPASy TrEMBL
Match: A0A1S3CLI3 (wound-induced protein 1 OS=Cucumis melo OX=3656 GN=LOC103502179 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 125/168 (74.40%), Postives = 130/168 (77.38%), Query Frame = 0


Query: 1   MDSISTSSAHILKHTQIALSETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGP 60
           MDS S SS HI+KHTQI LSETEQRNRATAETLYKSLA GRTHAVAKFLA DLEWWFHGP
Sbjct: 1   MDSTSISSTHIIKHTQITLSETEQRNRATAETLYKSLAAGRTHAVAKFLAADLEWWFHGP 60

Query: 61  PHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGA------------------ 120
           PHCQYMMR+LTG+SSHGEFRFEPRSITAIGDSV+VAEGWEGA                  
Sbjct: 61  PHCQYMMRILTGESSHGEFRFEPRSITAIGDSVIVAEGWEGAQVYWVHVWTLKDGLITQF 120

Query: 121 --------------QPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL 137
                         QPAWEEIRHDG+TVWRSQPRDLFHRSLPAIVLAL
Sbjct: 121 REYFNTWLVVTDLRQPAWEEIRHDGMTVWRSQPRDLFHRSLPAIVLAL 168

[Close]

BLAST of CsaV3_4G026930 vs. ExPASy TrEMBL
Match: A0A6J1IMA8 (wound-induced protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111478330 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.9e-54
Identity = 113/169 (66.86%), Postives = 125/169 (73.96%), Query Frame = 0


Query: 1   MDSISTSSAHILKHTQIALS-ETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHG 60
           MDS STS+ HILKH++I  S ++E +NRATA+ LYKSLA GRT AVAKFLA DLEWWFHG
Sbjct: 1   MDSTSTST-HILKHSEITHSTDSEHQNRATADALYKSLAAGRTDAVAKFLATDLEWWFHG 60

Query: 61  PPHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGA----------------- 120
           PPHCQYMMRVLTG+SSH EFRFEPRSITAIGDSV+VAEGWEGA                 
Sbjct: 61  PPHCQYMMRVLTGESSHAEFRFEPRSITAIGDSVIVAEGWEGAQVYWVHVWTLKDGVITQ 120

Query: 121 ---------------QPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL 137
                          QPAWEE+RHDGLTVW+S PRDLFHRSLPAI+LAL
Sbjct: 121 FREYFNTWLVVADLRQPAWEEVRHDGLTVWQSHPRDLFHRSLPAIMLAL 168

[Close]

BLAST of CsaV3_4G026930 vs. ExPASy TrEMBL
Match: A0A6J1GE13 (wound-induced protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111453098 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.1e-53
Identity = 111/169 (65.68%), Postives = 122/169 (72.19%), Query Frame = 0


Query: 1   MDSISTSSAHILKHTQIALS-ETEQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHG 60
           MDS STS+ HILKH++I  S E+E +NRATA+ LYKSLA GRT AVAKFLA DLEWWFHG
Sbjct: 1   MDSTSTST-HILKHSEITHSTESEHQNRATADALYKSLAAGRTDAVAKFLATDLEWWFHG 60

Query: 61  PPHCQYMMRVLTGDSSHGEFRFEPRSITAIGDSVVVAEGWEGA----------------- 120
           PPHCQYMMRVLTG+SSH EFRFEPRSIT IGDSV+VAEGWEGA                 
Sbjct: 61  PPHCQYMMRVLTGESSHAEFRFEPRSITEIGDSVIVAEGWEGAQVYWVHVWTLKDGVITQ 120

Query: 121 ---------------QPAWEEIRHDGLTVWRSQPRDLFHRSLPAIVLAL 137
                          QPAWEE+RHDGLTVW+S PRDLFHRSLP I+ AL
Sbjct: 121 FREYFNTWLVVADLRQPAWEEVRHDGLTVWQSHPRDLFHRSLPVIMFAL 168

[Close]

BLAST of CsaV3_4G026930 vs. TAIR 10
Match: AT5G01740.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 107.8 bits (268), Expect = 6.8e-24
Identity = 59/148 (39.86%), Postives = 78/148 (52.70%), Query Frame = 0


Query: 23  EQRNRATAETLYKSLATGRTHAVAKFLAPDLEWWFHGPPHCQYMMRVLTGDSSHG-EFRF 82
           E +N+ T E LYK+L  G T  V K +A D+EWWFHGP  CQ+MMR+LTG+      FRF
Sbjct: 15  EMKNQGTIELLYKALQQGDTSTVTKVVASDVEWWFHGPHDCQHMMRLLTGEPPRQVSFRF 74

Query: 83  EPRSITAI--GDSVVVAEGWEGAQPAWEEI--RHDGL----------------------- 137
           EP S+  +  G   V+AEGWEG++  W  +    DG+                       
Sbjct: 75  EPSSVQVVVPGHDCVIAEGWEGSRVYWVHVWKLKDGVVTELREYFNTWLTVTDYSLGAVG 134

The following BLAST results are available for this feature:

BLAST of CsaV3_4G026930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649583.1	4.4e-73	100.00	hypothetical protein Csa_012333 [Cucumis sativus]	[more]
XP_004149930.1	4.2e-68	80.95	senescence associated gene 20 [Cucumis sativus]	[more]
XP_008464249.1	3.1e-63	74.40	PREDICTED: wound-induced protein 1 [Cucumis melo] >KAA0065331.1 wound-induced pr...	[more]
XP_038883007.1	7.5e-57	68.45	wound-induced protein 1 [Benincasa hispida]	[more]
XP_022978301.1	1.0e-53	66.86	wound-induced protein 1 [Cucurbita maxima]	[more]

BLAST of CsaV3_4G026930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G026930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1G7	2.1e-68	80.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G325520 PE=4 SV=1	[more]
A0A5D3CHY0	1.5e-63	74.40	Wound-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CLI3	1.5e-63	74.40	wound-induced protein 1 OS=Cucumis melo OX=3656 GN=LOC103502179 PE=4 SV=1	[more]
A0A6J1IMA8	4.9e-54	66.86	wound-induced protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111478330 PE=4 SV=1	[more]
A0A6J1GE13	7.1e-53	65.68	wound-induced protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111453098 PE=4 SV=1	[more]

BLAST of CsaV3_4G026930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01740.1	6.8e-24	39.86	Nuclear transport factor 2 (NTF2) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.50		coord: 22..121 e-value: 2.0E-9 score: 39.6
None	No IPR available	PANTHER	PTHR33703:SF16	OS05G0342100 PROTEIN	coord: 20..106
None	No IPR available	PANTHER	PTHR33703:SF16	OS05G0342100 PROTEIN	coord: 105..136
IPR009798	Wound-induced protein Wun1-like	PFAM	PF07107	WI12	coord: 67..106 e-value: 1.6E-5 score: 25.0
IPR009798	Wound-induced protein Wun1-like	PANTHER	PTHR33703	OS07G0691300 PROTEIN	coord: 105..136 coord: 20..106
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 23..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G026930.1	CsaV3_4G026930.1	mRNA