CsaV3_4G025470 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G025470
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ctenidin-1-like
Location	chr4: 14967802 .. 14968364 (-)
RNA-Seq Expression	CsaV3_4G025470
Synteny	CsaV3_4G025470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAACCTTCTTAGGGAAAGCAAAAAAAAAAAAATATTATTATATTCTAAAAAACAAAAGGGTCCATACTCCATACCATTACAAAAAAAAATGGCTGACCCGTTTGTTATAGTCCCATTGGTTTTTGTTTCCGTTGTTGTATTGTTCACGGTGTTGAGTTTTATTTGCTGGACATCTGGGGCCAGTTCCAGCGGCGGAGGACATGCTCATTTCGGCGGCGCTGCCCATGCTGGAGGATTCCATCATCATGCCGGCGGTCATGCTCACCACGTGGCCGTAGCCCATTCTGGAGGTGGAGGACACGGTTGTGGTGGTGGCGCCGGAGGTGGAGGTGGCTCTAGCTCTGCCTGTTGATGACCTTTTTTTTTTCCTGTCAATTGTGGCCGTATATATGTAATTTAATTAAACGGTTAATCAGGTTGTAATCTCTCCCTATACAATTGAATGAATTTGTGTTAGTAATTCTTTTTATTCAAATAAATTTGTGTATATTTATTAAAGTCCAAATAATAAAATTTGTGTTAGAAAGTTATTGGTTGAATCTGGGGCTTATACATTTCTTT

mRNA sequence

ATGGCTGACCCGTTTGTTATAGTCCCATTGGTTTTTGTTTCCGTTGTTGTATTGTTCACGGTGTTGAGTTTTATTTGCTGGACATCTGGGGCCAGTTCCAGCGGCGGAGGACATGCTCATTTCGGCGGCGCTGCCCATGCTGGAGGATTCCATCATCATGCCGGCGGTCATGCTCACCACGTGGCCGTAGCCCATTCTGGAGGTGGAGGACACGGTTGTGGTGGTGGCGCCGGAGGTGGAGGTGGCTCTAGCTCTGCCTGTTGA

Coding sequence (CDS)

ATGGCTGACCCGTTTGTTATAGTCCCATTGGTTTTTGTTTCCGTTGTTGTATTGTTCACGGTGTTGAGTTTTATTTGCTGGACATCTGGGGCCAGTTCCAGCGGCGGAGGACATGCTCATTTCGGCGGCGCTGCCCATGCTGGAGGATTCCATCATCATGCCGGCGGTCATGCTCACCACGTGGCCGTAGCCCATTCTGGAGGTGGAGGACACGGTTGTGGTGGTGGCGCCGGAGGTGGAGGTGGCTCTAGCTCTGCCTGTTGA

Protein sequence

MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGSSSAC*

Homology

[Close]

BLAST of CsaV3_4G025470 vs. NCBI nr
Match: KGN54298.1 (hypothetical protein Csa_017993 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 7.5e-34
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH 60
          MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH
Sbjct: 1  MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH 60

Query: 61 VAVAHSGGGGHGCGGGAGGGGGSSSAC 88
          VAVAHSGGGGHGCGGGAGGGGGSSSAC
Sbjct: 61 VAVAHSGGGGHGCGGGAGGGGGSSSAC 87

[Close]

BLAST of CsaV3_4G025470 vs. NCBI nr
Match: XP_011654372.1 (glycine-rich protein DOT1 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH 60
          MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH
Sbjct: 1  MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH 60

Query: 61 VAVAHSGGGGHGCGGGAGGGGGSSSA 87
          VAVAHSGGGGHGCGGGAGGGGGSSSA
Sbjct: 61 VAVAHSGGGGHGCGGGAGGGGGSSSA 86

[Close]

BLAST of CsaV3_4G025470 vs. NCBI nr
Match: KAA0045150.1 (ctenidin-1-like [Cucumis melo var. makuwa] >TYK23587.1 ctenidin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 3.6e-20
Identity = 70/94 (74.47%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH 60
          MA   VI+ LVFV +VV F +LS ICW SG SSSGGGHAHFGGAAH GGFHHHAGGHAHH
Sbjct: 1  MAHSSVIILLVFVPIVVFFALLSIICWNSGRSSSGGGHAHFGGAAHDGGFHHHAGGHAHH 60

Query: 61 VA-VAHSGGGGHGC------GGGAGGGGGSSSAC 88
          VA V HSGGGGH C      GGG GGGGGSSSAC
Sbjct: 61 VAIVTHSGGGGHDCGGAAGGGGGGGGGGGSSSAC 94

[Close]

BLAST of CsaV3_4G025470 vs. NCBI nr
Match: XP_008450046.1 (PREDICTED: ctenidin-1-like [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 7.8e-15
Identity = 64/93 (68.82%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1  MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH 60
          MA   VI+ LVFV +VV F +LS ICW SG SSSGGGHAHFGGAAH GGFHHHAGGHAHH
Sbjct: 1  MAHSSVIILLVFVPIVVFFALLSIICWNSGRSSSGGGHAHFGGAAHDGGFHHHAGGHAHH 60

Query: 61 VA-VAHSGGGGHGCGGGA-------GGGGGSSS 86
          VA V HSGGGGH CG  A         GGGSS+
Sbjct: 61 VAIVTHSGGGGHDCGVFAVLSLLCRWTGGGSST 93

[Close]

BLAST of CsaV3_4G025470 vs. NCBI nr
Match: KAG6581831.1 (hypothetical protein SDJN03_21833, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 9.2e-08
Identity = 55/91 (60.44%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 1  MADP-FVIVPLVFVSVVVLFTVLSFIC-WTSGASSSGGGHAHFGGAAHAGGFHHHAGGHA 60
          M DP F+I+P+VF+S+ V+FTVLS +C  T+G ++SGGG AHFGGAAHAGG HH  G  A
Sbjct: 1  MVDPAFIIIPVVFLSICVVFTVLSLLCRGTAGGTTSGGG-AHFGGAAHAGGLHH--GHAA 60

Query: 61 HHVAVAHSGGGG--HGCGGGAGGGGGSSSAC 88
           H A  H GGGG  HG GGG GGGGG    C
Sbjct: 61 LHHAGGHFGGGGHDHGGGGGGGGGGGGGGGC 88

[Close]

BLAST of CsaV3_4G025470 vs. ExPASy TrEMBL
Match: A0A0A0KXN6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297480 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.6e-34
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH 60
          MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH
Sbjct: 1  MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH 60

Query: 61 VAVAHSGGGGHGCGGGAGGGGGSSSAC 88
          VAVAHSGGGGHGCGGGAGGGGGSSSAC
Sbjct: 61 VAVAHSGGGGHGCGGGAGGGGGSSSAC 87

[Close]

BLAST of CsaV3_4G025470 vs. ExPASy TrEMBL
Match: A0A5D3DIY3 (Ctenidin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00980 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-20
Identity = 70/94 (74.47%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH 60
          MA   VI+ LVFV +VV F +LS ICW SG SSSGGGHAHFGGAAH GGFHHHAGGHAHH
Sbjct: 1  MAHSSVIILLVFVPIVVFFALLSIICWNSGRSSSGGGHAHFGGAAHDGGFHHHAGGHAHH 60

Query: 61 VA-VAHSGGGGHGC------GGGAGGGGGSSSAC 88
          VA V HSGGGGH C      GGG GGGGGSSSAC
Sbjct: 61 VAIVTHSGGGGHDCGGAAGGGGGGGGGGGSSSAC 94

[Close]

BLAST of CsaV3_4G025470 vs. ExPASy TrEMBL
Match: A0A1S3BPC8 (ctenidin-1-like OS=Cucumis melo OX=3656 GN=LOC103491755 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.8e-15
Identity = 64/93 (68.82%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1  MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHH 60
          MA   VI+ LVFV +VV F +LS ICW SG SSSGGGHAHFGGAAH GGFHHHAGGHAHH
Sbjct: 1  MAHSSVIILLVFVPIVVFFALLSIICWNSGRSSSGGGHAHFGGAAHDGGFHHHAGGHAHH 60

Query: 61 VA-VAHSGGGGHGCGGGA-------GGGGGSSS 86
          VA V HSGGGGH CG  A         GGGSS+
Sbjct: 61 VAIVTHSGGGGHDCGVFAVLSLLCRWTGGGSST 93

The following BLAST results are available for this feature:

BLAST of CsaV3_4G025470 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54298.1	7.5e-34	100.00	hypothetical protein Csa_017993 [Cucumis sativus]	[more]
XP_011654372.1	8.3e-33	100.00	glycine-rich protein DOT1 [Cucumis sativus]	[more]
KAA0045150.1	3.6e-20	74.47	ctenidin-1-like [Cucumis melo var. makuwa] >TYK23587.1 ctenidin-1-like [Cucumis ...	[more]
XP_008450046.1	7.8e-15	68.82	PREDICTED: ctenidin-1-like [Cucumis melo]	[more]
KAG6581831.1	9.2e-08	60.44	hypothetical protein SDJN03_21833, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_4G025470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G025470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXN6	3.6e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297480 PE=4 SV=1	[more]
A0A5D3DIY3	1.7e-20	74.47	Ctenidin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G0098...	[more]
A0A1S3BPC8	3.8e-15	68.82	ctenidin-1-like OS=Cucumis melo OX=3656 GN=LOC103491755 PE=4 SV=1	[more]

BLAST of CsaV3_4G025470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G025470.1	CsaV3_4G025470.1	mRNA