CsaV3_4G024810 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GGGACATGGAAAGGATAATATTGTAAATTTAGGGAACTATAAACATCACATCGAGCTTAAAGTATTCCCGCGCGAGTTTAATTTCCATCTTCTCCTCATCTAAGAATTTCAAAATTTTCCGAAGAAAAATCCTAAGGTAAACCAAATTCGCTTTCGAAATCTCTACAGAATTTATCAACCGATCATGGTTTCTTCTCCAGAATTCCATGGAACAACAAACCCCACCAGCGGCGGCGCTTCAGTTTCTTACTTCCAGAGAACAGTTAGCTCTTCCTCAAACTTCTCTTCAATTAGCTCTTCCTCAAACTTCTCTTCAATTACTTTTATTGATTTCATACTGATTGTGTGCCTTATTGATTGAATCAAACAATTGAAGGTTCGTTTGCTCGATTGGTGGTTAATCACAGCTGGAAATGACTCCAATGGGAAAACCCTAGCCGTCGCCGGCTTAACATCTAAACCGTAATCACATTTTTCTCTCTCGTTCTGGGTTTTTATTCTCTAATTGTTTCTGTTTTCTTTCTCTTTTTGATTTAGTCTTTTGCCAAATCGCGAGACAATTTTATTATTTTGTTTTAGGGGACAACCTGTTCGAGTATTTTCTTCTGCTCCCATCGTTAAGAGACACGATGTTTTCACTCTGGAGACTGCTGATGGAATCTGTGTTGTTCTCAAGGGTTTCTTAAACAAACTGCGTGCCACTGATAATGGGTTCACGCCTCAGGTTTGCGTGTCAAATAAACAATTTCTGGTTATTTGATTTTCCACTCATTTTCTTTTCTTATTATTTGTATATTCTCGGTGCTTTGATTTGTGTTTCGCTATTGACAGGTTTTCAAGCATTTTGTGTTTGGGTTTCCTCCCAACTGGGAAACTCATGCAGCTAATTGCTTTGAGGCAGGAGCTTCTAATAGTACTGCTGCTGGGGGAAATGCTTCTGATACAGATAATCTGTCCTGTAGATCGAGAAGTGTTACTGGTACACTCTTCTACCTGTTGGTTTTGTGTCAAACACTTTCCAAGCGCAACATGTGCATTTTCGACACAACATGTATATTTGAATATGATCCAATAATTGTACGTGCCACCCCTTAAATACACTAGCCACATGTTTATTAGAATTAGTAAAAGTTGTTGTAATTTCTCAATTGCGTTTGTTATTTGGTTAGATGATATTCCTATTTTGTGTAGAAGCATACCTTCCAAAGCTTGTTCACATCCTACGATAAATGGGTGTTCACTCTTACGTTGTAAATCATCAAATGCAAAGAGCAAAGTCTTAAGAATACCTCTGTTCAACCTTGGTATTAAGATTAGGCGTAAGGAGGGGTAGAGTTATCGAGATGTCCAAAGAGAGCATAAGCTCGAAAAATGGCTGATATTTGGAATTTCCACTCCACATAGTCTGCGGAATCAAGTCTAATGGGGACAAGATTGCAAATGTTTGAGAGGAGGCCACAGATTTGAGGGTTGGAGACAGCCGGATTTGATTGAGAAAGGGAGGAAGCCATTTTGGCAAGGAAGGAAAAAAAAAACAAAAGTTAGTCAAGGCCAGCTCTGATACCAAGATTGAACAATTCTTAAGACTTTGCTCTTTGTATTTGATGATTTAAAATGTAAGAGTGAACACCCATTTATAGTAGGATGTGAACAAGATTTGACAGATATGATTATTCTACACAAAGATAGGAATATCATCCAAAAAATATGAATTGAGGAGGTACAACAACTTTTACTAATTTATCATATAGGCAACTTAATGTGTAGCTCAATTGACTAAAAAGGTCAAAGGTACGTGGAATTTTTTTTTTAAAATGATGGATATAAGAAGTTTTGAGTGAAAAATATCAAACTTATTTTTTAGCCGACACCTGTATTTTATAAATGTGTCCACTGTATGCAACGTCCTAAATTTTGTATCAAACAATGCATTGATGTCTTGAACATGTCCCATTCCTAACATTTCTCCTCAACTTTGAATGGCTGCCTGACATGAACAACTGTGCACTTACCGATGTGAATTCTCCATTGCGTGAGATTTCTTCAAGTAGGCTTAAAAATCTTAAATATTTATCGTTTAGATGTTGGATCACAGAGAAAAATATTTGTTTGGTTTTGGGTTTTCTTGAAATCTTTAATCATATGGCATTGTTGCATTAGAAATATGCAGTTGATTTCAACTTTATGAATGTAAGATCTAAGAAAAAGCTGTCAATAAGGTAATGGATTGGATCATGGAGATTCTATGGCCGAAGAAACAATGCAGACTACAAGTGCAACTGAAACTCCAGCACCATTCACTGGTGCTGATGTTCAAGATGAAGAAGTTGAAAACAAAGGAAAAAAAGAGAGAGAATCTCGGAAAAAAGTCACGAAGAAAATTATTTCCGATTCACCTGTCAGTAATTTCTGCCATTCATGCTGTTTTTCCACTGCCTCTCTAGTATTAGTAGTAGCAATTTTCTTTTTGAATGTCTAGATTTCAAATTTTGTATTTGTTTCTCCATTCTCTTCGTATTTAAAACCGGTTTATAGTATATTTGGTTCCTTGAATTGTGCATGGATAATGGTGGTTGTTGATTCAGGGAAGTGGTGTTAGTAAGAATACTAGAGGAAGGAAGGAGAAGGAGTGTCTAGTATCTCCAGAATGTAGGAGTTATGGGCGATCCCGATCAGGTGAGAAGAAGATTTAACAAAGTTGATTGAGTCTGATGGCTTGTTTGTTTTGTTACGGTTAATGGAATTGGATTGATGATGAATGTTGTTTGCAGGGCGAGTACTTCTGCCAACAATGGAGTTTTGGCGCAACCAATTACCTGTTTACGACTCGGTAACTTACTTTTAATCAGTTTTCTGTTCATTCAAAATTTTAATTTTCGATGGTTTTTATTGAACCCTTTAGTTAATTTCAGAGTAAAATGTTGCTCTCTTAAACATTCATTTTTGTGTGTCATAGGTGTCTGGTATTTGATTTTTGTGAGTAGACCTATTCAACACTTTTTTTAAAAAAATGAATCTACTGAACTGTAAGATAGGAGCTGTGGAGATTCCAACAGTAGACTTTGGGGTTTCTAACATATGTTATATGCTAGTTGAGCTGCTTTTATATATTGGTTAGCTTTTAACTTATACATGGTTCTTGTTATAAATACCAAACCAATGCTTCGGATCTCAATTACCACATCTCCTTGATTCTTTTTTTAATTTGTACCATGGCTAAATGATCGATTTAGATCTTTACGTTAAGGTGGTTTGCATTTTTGTTTTCTTCTTTTCTATTTCACTTTAGTTTTATGTTCTAATATTTTATTAATACATAGTTTCTTTGTAATTCAATTTCAACATGATAGACTTGTCAATTCAGTGGCTAAATATTTGATTGAGTTCTTCAAGTTTATCGTCAGTCAATTTCTCTCTGAATTGGAATAAAAGATGTCAAAAGGTAGAGACTAAAACTTGTAGTGACGAAAAAACATATATTTAGTCGTCTTTTTAATTGGAAAACTCATATAATGGGACAACAGGATCGAAAGTTAAGAGGAATACGTGAAGAGCAGCAAGACAAAAAAACCACACTCACAACCAAGAGGTCTTTTTGTTAATTATGTATTGTGTTTTCTTATTAATTAATTAATTTAGAAATTTTAGAAATAAGAACAAACAGATGTTTTTTTTTACTGTGTGCAGGAAGGAAGAGCATAGGTCGAAGAAAGCGAAAAGATAGTTAAAGTGATAATGGTATGGGAATTAGGATGTTATTGTAGATATGGGTTTCTACTTTTTTTTCCCCTACTGTGAAGTACAAACCAAACGTATATCTATGTTTATATATTTTGCTCGCTATGTTCTGCCCCCTTCTAGTTTCTTCTGACCCTGATATTCTTAGTGAATCATGAATCAATATCATGACCTTTTTAAATTAGTTATCGAGTCGATCTTTTCCTTCACTAAATGACCCACTGAGATGTTTACACGCCGGTATTTTGTTTCATACGACTCTTTGACGTTTTACTAATGAGCCGAG ATGGTTTCTTCTCCAGAATTCCATGGAACAACAAACCCCACCAGCGGCGGCGCTTCAGTTTCTTACTTCCAGAGAACAGTTCGTTTGCTCGATTGGTGGTTAATCACAGCTGGAAATGACTCCAATGGGAAAACCCTAGCCGTCGCCGGCTTAACATCTAAACCGGGACAACCTGTTCGAGTATTTTCTTCTGCTCCCATCGTTAAGAGACACGATGTTTTCACTCTGGAGACTGCTGATGGAATCTGTGTTGTTCTCAAGGGTTTCTTAAACAAACTGCGTGCCACTGATAATGGGTTCACGCCTCAGGTTTTCAAGCATTTTGTGTTTGGGTTTCCTCCCAACTGGGAAACTCATGCAGCTAATTGCTTTGAGGCAGGAGCTTCTAATAGTACTGCTGCTGGGGGAAATGCTTCTGATACAGATAATCTGTCCTGTAGATCGAGAAGTGTTACTGGTAATGGATTGGATCATGGAGATTCTATGGCCGAAGAAACAATGCAGACTACAAGTGCAACTGAAACTCCAGCACCATTCACTGGTGCTGATGTTCAAGATGAAGAAGTTGAAAACAAAGGAAAAAAAGAGAGAGAATCTCGGAAAAAAGTCACGAAGAAAATTATTTCCGATTCACCTGGAAGTGGTGTTAGTAAGAATACTAGAGGAAGGAAGGAGAAGGAGTGTCTAGTATCTCCAGAATGTAGGAGTTATGGGCGATCCCGATCAGGGCGAGTACTTCTGCCAACAATGGAGTTTTGGCGCAACCAATTACCTGTTTACGACTCGGATCGAAAGTTAAGAGGAATACGTGAAGAGCAGCAAGACAAAAAAACCACACTCACAACCAAGAGGAAGGAAGAGCATAGGTCGAAGAAAGCGAAAAGATAG ATGGTTTCTTCTCCAGAATTCCATGGAACAACAAACCCCACCAGCGGCGGCGCTTCAGTTTCTTACTTCCAGAGAACAGTTCGTTTGCTCGATTGGTGGTTAATCACAGCTGGAAATGACTCCAATGGGAAAACCCTAGCCGTCGCCGGCTTAACATCTAAACCGGGACAACCTGTTCGAGTATTTTCTTCTGCTCCCATCGTTAAGAGACACGATGTTTTCACTCTGGAGACTGCTGATGGAATCTGTGTTGTTCTCAAGGGTTTCTTAAACAAACTGCGTGCCACTGATAATGGGTTCACGCCTCAGGTTTTCAAGCATTTTGTGTTTGGGTTTCCTCCCAACTGGGAAACTCATGCAGCTAATTGCTTTGAGGCAGGAGCTTCTAATAGTACTGCTGCTGGGGGAAATGCTTCTGATACAGATAATCTGTCCTGTAGATCGAGAAGTGTTACTGGTAATGGATTGGATCATGGAGATTCTATGGCCGAAGAAACAATGCAGACTACAAGTGCAACTGAAACTCCAGCACCATTCACTGGTGCTGATGTTCAAGATGAAGAAGTTGAAAACAAAGGAAAAAAAGAGAGAGAATCTCGGAAAAAAGTCACGAAGAAAATTATTTCCGATTCACCTGGAAGTGGTGTTAGTAAGAATACTAGAGGAAGGAAGGAGAAGGAGTGTCTAGTATCTCCAGAATGTAGGAGTTATGGGCGATCCCGATCAGGGCGAGTACTTCTGCCAACAATGGAGTTTTGGCGCAACCAATTACCTGTTTACGACTCGGATCGAAAGTTAAGAGGAATACGTGAAGAGCAGCAAGACAAAAAAACCACACTCACAACCAAGAGGAAGGAAGAGCATAGGTCGAAGAAAGCGAAAAGATAG MVSSPEFHGTTNPTSGGASVSYFQRTVRLLDWWLITAGNDSNGKTLAVAGLTSKPGQPVRVFSSAPIVKRHDVFTLETADGICVVLKGFLNKLRATDNGFTPQVFKHFVFGFPPNWETHAANCFEAGASNSTAAGGNASDTDNLSCRSRSVTGNGLDHGDSMAEETMQTTSATETPAPFTGADVQDEEVENKGKKERESRKKVTKKIISDSPGSGVSKNTRGRKEKECLVSPECRSYGRSRSGRVLLPTMEFWRNQLPVYDSDRKLRGIREEQQDKKTTLTTKRKEEHRSKKAKR* Homology
BLAST of CsaV3_4G024810 vs. NCBI nr
Match: XP_031740231.1 (kinetochore-associated protein KNL-2 homolog [Cucumis sativus] >KGN54235.1 hypothetical protein Csa_017902 [Cucumis sativus]) HSP 1 Score: 582.8 bits (1501), Expect = 1.7e-162 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. NCBI nr
Match: KAA0032623.1 (protein EMBRYO DEFECTIVE 1674-like isoform X1 [Cucumis melo var. makuwa] >TYK23505.1 protein EMBRYO DEFECTIVE 1674-like protein isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 458.8 bits (1179), Expect = 3.7e-125 Identity = 243/316 (76.90%), Postives = 257/316 (81.33%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. NCBI nr
Match: XP_038882906.1 (kinetochore-associated protein KNL-2 homolog isoform X3 [Benincasa hispida]) HSP 1 Score: 424.9 bits (1091), Expect = 5.8e-115 Identity = 226/319 (70.85%), Postives = 248/319 (77.74%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. NCBI nr
Match: XP_023544371.1 (mis18-binding protein 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 409.1 bits (1050), Expect = 3.3e-110 Identity = 207/280 (73.93%), Postives = 235/280 (83.93%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. NCBI nr
Match: XP_022949907.1 (uncharacterized protein LOC111453163 [Cucurbita moschata]) HSP 1 Score: 407.9 bits (1047), Expect = 7.4e-110 Identity = 206/280 (73.57%), Postives = 234/280 (83.57%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. ExPASy Swiss-Prot
Match: F4KCE9 (Kinetochore-associated protein KNL-2 homolog OS=Arabidopsis thaliana OX=3702 GN=KNL2 PE=1 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 4.9e-24 Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 0
HSP 2 Score: 48.9 bits (115), Expect = 1.1e-04 Identity = 38/132 (28.79%), Postives = 66/132 (50.00%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. ExPASy Swiss-Prot
Match: Q8RWD7 (Protein EMBRYO DEFECTIVE 1674 OS=Arabidopsis thaliana OX=3702 GN=EMB1674 PE=2 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.6e-14 Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. ExPASy TrEMBL
Match: A0A0A0KX65 (SANTA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G294920 PE=4 SV=1) HSP 1 Score: 582.8 bits (1501), Expect = 8.1e-163 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. ExPASy TrEMBL
Match: A0A5D3DIU6 (Protein EMBRYO DEFECTIVE 1674-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00080 PE=4 SV=1) HSP 1 Score: 458.8 bits (1179), Expect = 1.8e-125 Identity = 243/316 (76.90%), Postives = 257/316 (81.33%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. ExPASy TrEMBL
Match: A0A6J1GDE0 (uncharacterized protein LOC111453163 OS=Cucurbita moschata OX=3662 GN=LOC111453163 PE=4 SV=1) HSP 1 Score: 407.9 bits (1047), Expect = 3.6e-110 Identity = 206/280 (73.57%), Postives = 234/280 (83.57%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. ExPASy TrEMBL
Match: A0A6J1IT09 (uncharacterized protein LOC111478148 OS=Cucurbita maxima OX=3661 GN=LOC111478148 PE=4 SV=1) HSP 1 Score: 402.5 bits (1033), Expect = 1.5e-108 Identity = 203/280 (72.50%), Postives = 233/280 (83.21%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. ExPASy TrEMBL
Match: A0A6J1CQY8 (uncharacterized protein LOC111013765 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111013765 PE=4 SV=1) HSP 1 Score: 348.6 bits (893), Expect = 2.6e-92 Identity = 182/291 (62.54%), Postives = 219/291 (75.26%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. TAIR 10
Match: AT5G02520.1 (CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in 154 species: Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). ) HSP 1 Score: 113.2 bits (282), Expect = 3.5e-25 Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 0
HSP 2 Score: 48.9 bits (115), Expect = 8.1e-06 Identity = 38/132 (28.79%), Postives = 66/132 (50.00%), Query Frame = 0
BLAST of CsaV3_4G024810 vs. TAIR 10
Match: AT1G58210.1 (kinase interacting family protein ) HSP 1 Score: 81.6 bits (200), Expect = 1.1e-15 Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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