CsaV3_4G024750 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G024750
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Glycine rich RNA binding protein
Location	chr4: 14504618 .. 14507005 (-)
RNA-Seq Expression	CsaV3_4G024750
Synteny	CsaV3_4G024750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATATTTACGAAAATTTACTTTCAAAATATAATATCGATAAAAGGTAAGTATAAATAAAAATCACAATACAAACGTTTTGAAGAAGAAGTAAAGGCCAACAGTTGTGTAGCCCAGAACTCAAACCCTAAACCCTACATATCTCTCCGTCGCACCGCTCTTCTCTTTTTCATCGGCCCATCGGGAATCATATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTTAATGGATCTTCTTCTTCTTCTTCTTCCTCTTCCATTCTCCGATCCCAATGGAATGCCGTTCGTCTCAGCTCAACTCTCACATCACCCAAACTCTTCATCAGTGGTAAGCCTCACAGAACCATCTTGTGCTACGCCTTTCTTCTTATTTGGATTATTGAGAATTATTCAGAATTTTGGTATTGGGATCAATTTTCTGGTTGGATTATGAGAAATTTCCTGTATTCTTGCTCACCCTTCATTTCTTACATTTGAACAATAGTTACGAAGAACTAAATGGGAGATATAGTTAATTAACTATGCTCTGTTCCGTTACTTTTATCCCATTTGTTTATGGTCTTTGTGTTTCTATTTACATTTATGAAATTGCTTCAGTTTTCAGTAAGTGGTGGGGCTTGTTTGGGTGTAGGAATTTAGAAAATTATTCCTATCCTTATCATTCATCAATCATGCGTGCTGCTTGATAGCTTAAGCAATTAAGAAAGAATCATCATAGTTGGCTTGGTAAGAAGTCGGCAGTCGCTTATCTAAAATTTAATATCCTAATTTCTCCTTGACACCCTAATGTTGTAAGGTTAGAATGGATTGTCCGTTAAACCTAGTCCAAATACTCACAAATATATATATTAAAAATATTGAGGTCGTATAACTTGAATTGTTGTAAGAAAGTTAATTCATTTCTTATGCAACACAATGTTCCCTTTGCATTCGAAGGACTGCAGTTTGATTAACAAACCTTGCAAAGAACGAAGGGAGTAGGTATACAAAAATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAATCCCCACACACACAGAGAGAAGAAGAACAAAGAAAGAAAGAAAAGAAGATGAACCTTCTCATTAGAAAAAGTTCACTAGACAGCACCCTTATTGCCTGCATCTTCGAATCCTTTATAAATCCTTCATTTGTTCTTTCATTCTGTAAGAAACACCTCTCAATTAATGAAGGGGTAGTGGTATTAGAAACCCATCTCTTCTCTCTTTTTTTTTTTATTTTTGTAAGTATGGTAGTTTTGTTTGTGTATAATTCGAATATCATAAAGATTTCCATATATGTCAAGTCCCTTTAGTGGAGTTCTCGGTCTGCCAATATACCCCAAGAAGTAGACAGAGTTACAATGCACATTTAGAAAATTCTAGGAATTTGTTGTTGATAGATAGAATGGGTCCAAAGACCAAGTCAACATATCCGGTATAAATAGGGTCGAACAAATATGATTTTTTTTCTTAATCTAATATTCTTTTATGAATTAAAGAGTAGTAGAGTATAGAAGTACATAACAAATTTAGATGGGATATGCCTGGTGAAAGTCTCACTTCTATAAAACGACAGGTCTTTCGAGATTAACAACAGATGAGAAGCTCCGAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGATGGTATAGCACTCTCTCCCTCTCTCCAATTTACAAATCTATGAACATTTGTTCCAGAGTGCAACATCTTGACATTGCCTCAACATTTGTACAGCAAAGGTTGTAACCGATAGGGCGACGGGAAGATCAAAGGGATTTGCATTTGTGACCTACAGTACAATAGACGAGGCTGAGAAAGCTAGAGAAGAAATGAATGCAAAGTTTCTTGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATAATTGCTTGCAGAATTTTTGAAATCTCATAGCATTTGGTCATTTTTTCCAATTGCATATGGTTGAGTCGGATGTATGTTCTTCATCCATGGGTACTATAGATAAAATTCATGAACACCACTCTCAAGGTGGCCTCAAAACTGCGAGAAATTGCGCATTATTTTGTTATAGATATGGATTTGGATTCAGAAAAGTATTTACTGACCTTAGGTTTATTACCCATATTTAAATTCTTAACTTCTTATATGTATTTTGTTTTAGTTCCTATATTTAATAATTATTCTATTTTGATATCTAATTTTATGTGAAAATTGGAAACATCTTTTGTTATTTCCGTTGGTATCTTAGACTAGTATTCGAATATAATACCATAGCCAATATGTGTCAATCAAACTATCAGTCTGCGTGGTGTTTT

mRNA sequence

ATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTTAATGGATCTTCTTCTTCTTCTTCTTCCTCTTCCATTCTCCGATCCCAATGGAATGCCGTTCGTCTCAGCTCAACTCTCACATCACCCAAACTCTTCATCAGTGGTCTTTCGAGATTAACAACAGATGAGAAGCTCCGAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGATGCAAAGGTTGTAACCGATAGGGCGACGGGAAGATCAAAGGGATTTGCATTTGTGACCTACAGTACAATAGACGAGGCTGAGAAAGCTAGAGAAGAAATGAATGCAAAGTTTCTTGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATAA

Coding sequence (CDS)

ATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTTAATGGATCTTCTTCTTCTTCTTCTTCCTCTTCCATTCTCCGATCCCAATGGAATGCCGTTCGTCTCAGCTCAACTCTCACATCACCCAAACTCTTCATCAGTGGTCTTTCGAGATTAACAACAGATGAGAAGCTCCGAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGATGCAAAGGTTGTAACCGATAGGGCGACGGGAAGATCAAAGGGATTTGCATTTGTGACCTACAGTACAATAGACGAGGCTGAGAAAGCTAGAGAAGAAATGAATGCAAAGTTTCTTGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATAA

Protein sequence

MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG*

Homology

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BLAST of CsaV3_4G024750 vs. NCBI nr
Match: XP_031739912.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8649523.1 hypothetical protein Csa_018111 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 2.1e-73
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 147
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146

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BLAST of CsaV3_4G024750 vs. NCBI nr
Match: XP_008447620.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 2.4e-69
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVL+G SS SSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF
Sbjct: 1   MAFFSTVRRVLSG-SSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLVDAKVVTDRATGRSKGFAFVTYSTI+EAE+AR+EMNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 147
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of CsaV3_4G024750 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 129/146 (88.36%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAF S+VRRVLNG SSSS++SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFLSSVRRVLNG-SSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLV+AKV+TDRATGRSKGF FVTY+TI++AEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 147
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 145

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BLAST of CsaV3_4G024750 vs. NCBI nr
Match: XP_038881167.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 253.8 bits (647), Expect = 8.9e-64
Identity = 131/149 (87.92%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVLNG    SSSSSILRSQW AVRLSSTLTSP+LFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNG----SSSSSILRSQWTAVRLSSTLTSPRLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAK--- 120
           SSFGQLV+AKV+TDR TGRSKGF FV+Y+TI+EAEKAREEMNAKFLDGWVIFVDPAK   
Sbjct: 61  SSFGQLVEAKVITDRVTGRSKGFGFVSYNTIEEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PREPRPPPQPQSETSEFGIRTNKTIGWCG 147
           PREPRPPPQPQ ETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQPETSEFGIRTNKTIGWCG 145

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BLAST of CsaV3_4G024750 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 251.9 bits (642), Expect = 3.4e-63
Identity = 130/149 (87.25%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVLNG   SSSSSS+LRSQW + RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNG---SSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           +SFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  TSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQ---SETSEFGIRTNKTIGWCG 147
           PRPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPPPQPQSAETSEFGIRTNKTIGWCG 146

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BLAST of CsaV3_4G024750 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-22
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 39  SPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAR 98
           S  LF+SGLS+ TT E LR AF+ FG++ DAKVVTDR +G SKGF FV Y+T++++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 99  EEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 133
             M+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

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BLAST of CsaV3_4G024750 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-16
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 41  KLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREE 100
           KLFI GLS  TT++ L EAFS  GQ+V+A++V DR + RSKGF FVT+++ DEA+KA  E
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 101 MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 128
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

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BLAST of CsaV3_4G024750 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.2e-16
Identity = 46/103 (44.66%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 34  SSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDE 93
           S  + + KLFI+GLS  T+++ LR AF  FG+LV+ K++ D+ + RSKG+AF+ Y+T + 
Sbjct: 276 SPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335

Query: 94  AEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGI 137
           A  A +EMN K ++GW+I VD AK    +P  Q +S+ S FG+
Sbjct: 336 AGTALKEMNGKIINGWMIVVDVAK---TKPFRQNRSQPS-FGL 374

[Close]

BLAST of CsaV3_4G024750 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-15
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 41  KLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREE 100
           +LF++GLS  T+++ LR AF  FG+LV+ K++ D+ + RSKG+AF+ Y+T +    A + 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 101 MNAKFLDGWVIFVDPAKPR-EPRPPPQPQSETSEFGIRTNKTIG 144
           MN + ++GW+I VD AK R   R PP   S  S   +R+    G
Sbjct: 356 MNGQIINGWMIVVDVAKHRSRDRQPPYSASGRSNQVLRSRYHTG 399

[Close]

BLAST of CsaV3_4G024750 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-15
Identity = 57/132 (43.18%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 10  VLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDA 69
           VL  S  S+ SSS   S       SS+    KL++SGLS  TT++ LR+ F  FG L+  
Sbjct: 54  VLISSCLSTDSSSSPPS-------SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHM 113

Query: 70  KVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPREP-------R 129
            +V D+   R KGFAF+ Y T +EA KA + M+ KFLDG VIFV+ AK R         R
Sbjct: 114 NMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRR 173

Query: 130 PPPQPQSETSEF 135
             P+PQS+   F
Sbjct: 174 DFPKPQSKPRTF 178

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BLAST of CsaV3_4G024750 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVL+G SS SSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF
Sbjct: 1   MAFFSTVRRVLSG-SSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLVDAKVVTDRATGRSKGFAFVTYSTI+EAE+AR+EMNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 147
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of CsaV3_4G024750 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.7e-65
Identity = 129/146 (88.36%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAF S+VRRVLNG SSSS++SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFLSSVRRVLNG-SSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLV+AKV+TDRATGRSKGF FVTY+TI++AEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 147
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of CsaV3_4G024750 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.6e-63
Identity = 130/149 (87.25%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVLNG   SSSSSS+LRSQW + RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNG---SSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           +SFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  TSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQ---SETSEFGIRTNKTIGWCG 147
           PRPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of CsaV3_4G024750 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.8e-63
Identity = 132/148 (89.19%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVLNG   SSSSSS+LRSQW   RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNG---SSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           +SFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  TSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PR-PPPQPQS-ETSEFGIRTNKTIGWCG 147
           PR PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of CsaV3_4G024750 vs. ExPASy TrEMBL
Match: A0A7N2LNA5 (RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.9e-56
Identity = 113/146 (77.40%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAF S +RRVL G   SS++SSIL+S + ++R ++TLTSPKLFISGLSRLTTD+KL+EAF
Sbjct: 1   MAFVSGIRRVLGG--GSSTASSILQSHYTSIRFNTTLTSPKLFISGLSRLTTDQKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           S FGQLVDAKV+TDRATGRSKGF FV+Y+TI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SPFGQLVDAKVITDRATGRSKGFGFVSYATIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 147
           PRPPPQPQ E SE G RTN+T+GWCG
Sbjct: 121 PRPPPQPQQEPSETGFRTNRTVGWCG 144

[Close]

BLAST of CsaV3_4G024750 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 188.7 bits (478), Expect = 3.3e-48
Identity = 100/147 (68.03%), Postives = 119/147 (80.95%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAF S+ RR++ GSSS  SS S+       VR  STLTSP+LF+SGLSRLTT+EKL++AF
Sbjct: 1   MAFVSSFRRLVAGSSSLLSSPSL------CVRRCSTLTSPRLFVSGLSRLTTNEKLQDAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           +SFGQLVDA+V+TDR +GRSKGF FVTY+TI++AEKA+ EMNAKFLDGWVIFVDPA+PRE
Sbjct: 61  ASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPRE 120

Query: 121 PRPPPQ--PQSETSEFGIRTNKTIGWC 146
           PR P Q  P   +SE G  TNKTIGWC
Sbjct: 121 PRRPLQQEPLRPSSESGFTTNKTIGWC 141

[Close]

BLAST of CsaV3_4G024750 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-23
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 39  SPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAR 98
           S  LF+SGLS+ TT E LR AF+ FG++ DAKVVTDR +G SKGF FV Y+T++++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 99  EEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 133
             M+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

[Close]

BLAST of CsaV3_4G024750 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 41  KLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREE 100
           KLFI GLS  TT++ L EAFS  GQ+V+A++V DR + RSKGF FVT+++ DEA+KA  E
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 101 MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 128
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of CsaV3_4G024750 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-17
Identity = 46/103 (44.66%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 34  SSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDE 93
           S  + + KLFI+GLS  T+++ LR AF  FG+LV+ K++ D+ + RSKG+AF+ Y+T + 
Sbjct: 276 SPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335

Query: 94  AEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGI 137
           A  A +EMN K ++GW+I VD AK    +P  Q +S+ S FG+
Sbjct: 336 AGTALKEMNGKIINGWMIVVDVAK---TKPFRQNRSQPS-FGL 374

[Close]

BLAST of CsaV3_4G024750 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-16
Identity = 57/132 (43.18%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 10  VLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDA 69
           VL  S  S+ SSS   S       SS+    KL++SGLS  TT++ LR+ F  FG L+  
Sbjct: 54  VLISSCLSTDSSSSPPS-------SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHM 113

Query: 70  KVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPREP-------R 129
            +V D+   R KGFAF+ Y T +EA KA + M+ KFLDG VIFV+ AK R         R
Sbjct: 114 NMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRR 173

Query: 130 PPPQPQSETSEF 135
             P+PQS+   F
Sbjct: 174 DFPKPQSKPRTF 178

The following BLAST results are available for this feature:

BLAST of CsaV3_4G024750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739912.1	2.1e-73	100.00	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8...	[more]
XP_008447620.1	2.4e-69	95.89	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
XP_022143719.1	1.8e-64	88.36	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_038881167.1	8.9e-64	87.92	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]
XP_022972736.1	3.4e-63	87.25	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]	[more]

BLAST of CsaV3_4G024750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	2.3e-22	55.32	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	2.5e-16	49.48	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q8L440	7.2e-16	44.66	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q6YWP9	2.7e-15	40.38	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
Q9FX45	2.7e-15	43.18	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of CsaV3_4G024750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BHV3	1.2e-69	95.89	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1CQ59	8.7e-65	88.36	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A6J1I6S8	1.6e-63	87.25	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A6J1HDN1	2.8e-63	89.19	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A7N2LNA5	1.9e-56	77.40	RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CsaV3_4G024750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	3.3e-48	68.03	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.6e-23	55.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	1.7e-17	49.48	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	5.1e-17	44.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.9e-16	43.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 41..114 e-value: 5.6E-27 score: 105.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 42..108 e-value: 3.6E-21 score: 74.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 40..118 score: 18.700279
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 16..141 e-value: 6.7E-29 score: 102.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..146
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..146
None	No IPR available	PANTHER	PTHR15241:SF282	GLYCINE-RICH RNA-BINDING PROTEIN 6, MITOCHONDRIAL	coord: 1..146
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 39..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G024750.1	CsaV3_4G024750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding