CsaV3_4G024390 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G024390
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DNA topoisomerase 6 subunit A
Location	chr4: 14281859 .. 14283121 (-)
RNA-Seq Expression	CsaV3_4G024390
Synteny	CsaV3_4G024390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACAAGAGAAAACGCCGGCGATCTGAACTGAATTCCGAAGACGAAGCTCAACTTCCCTTCAAGAACAAACTCAAGCCTGATTCCTTCATTCTTCAAATTCTCAAAGAGCTCAGTGACGCCTCCACTGCCTCATCTTCCTCTTCATCCAAAACCCTTGACGACCTCGGCCTCTCCTCCTCCTGCCGCGAGGTGACCGATCTTTCGCTTTCGTCCGTGCAAGCCACAATTGAGTCTGTGATCCTTAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCCTTCGACGTTCCTTCTCGATCGGGGGCCAACCAGTTGTACGTTCCAGAGCTCGATCGAATCGTTTTGAAAGATAAAACTGCCCTCCGTCCCTACGCCAATATTTCTACTGTCCGAAAATCCACCATTACTACTCGCATTCTTCAGCTTGTCCACCAGCTCTGCATAAAAAACATCCACGTAACCAAGCGAGATCTGTTCTACACGGATGTGAAGCTCTTCCAGGATCAGACTCAGTCAGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGTTGTACAAGGTCGAGTCTCAATGTGATTGCTGCAGAGAAAGGGGTGGTTGTGGGAAGACTAATTTTTAGTGACAATGGAGATATGATAGATTGTACTAAAATGGGTATGGGAGGAAAAGCGATTCCACCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATACTCTTAGTTGAGAAAGATGCTGCTTATATTAGGTTAGCTGAGGATAGATTCTACAATCGTTTTCCATGTATAATTGTGACGGCTAAGGGACAGCCAGATGTGGCCACAAGATTGTTCTTGAGGAAGATGAAGATGGAGCTGAAGCTCCCAGTGCTTGCCCTTGTGGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGGTGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTGGGGATTAGGCCGAGCGATTTGGATAAATATAAGATACCTGAGCAGTGCAGGTTACCAATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTCAAGAAGAATCCTGGTTGGGTTGAAGAGCTCAGTTTAATGGTGAAAACAAAGCAAAAGGCTGAAATTCAAGCATTGAGTTCATTTGGTTTTCAGTATTTGTCAGAGGTTTATTTGCCATTGAAGCTGCAGCAGAAGGATTGGCTGTGA

mRNA sequence

ATGGCCGACAAGAGAAAACGCCGGCGATCTGAACTGAATTCCGAAGACGAAGCTCAACTTCCCTTCAAGAACAAACTCAAGCCTGATTCCTTCATTCTTCAAATTCTCAAAGAGCTCAGTGACGCCTCCACTGCCTCATCTTCCTCTTCATCCAAAACCCTTGACGACCTCGGCCTCTCCTCCTCCTGCCGCGAGGTGACCGATCTTTCGCTTTCGTCCGTGCAAGCCACAATTGAGTCTGTGATCCTTAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCCTTCGACGTTCCTTCTCGATCGGGGGCCAACCAGTTGTACGTTCCAGAGCTCGATCGAATCGTTTTGAAAGATAAAACTGCCCTCCGTCCCTACGCCAATATTTCTACTGTCCGAAAATCCACCATTACTACTCGCATTCTTCAGCTTGTCCACCAGCTCTGCATAAAAAACATCCACGTAACCAAGCGAGATCTGTTCTACACGGATGTGAAGCTCTTCCAGGATCAGACTCAGTCAGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGTTGTACAAGGTCGAGTCTCAATGTGATTGCTGCAGAGAAAGGGGTGGTTGTGGGAAGACTAATTTTTAGTGACAATGGAGATATGATAGATTGTACTAAAATGGGTATGGGAGGAAAAGCGATTCCACCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATACTCTTAGTTGAGAAAGATGCTGCTTATATTAGGTTAGCTGAGGATAGATTCTACAATCGTTTTCCATGTATAATTGTGACGGCTAAGGGACAGCCAGATGTGGCCACAAGATTGTTCTTGAGGAAGATGAAGATGGAGCTGAAGCTCCCAGTGCTTGCCCTTGTGGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGGTGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTGGGGATTAGGCCGAGCGATTTGGATAAATATAAGATACCTGAGCAGTGCAGGTTACCAATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTCAAGAAGAATCCTGGTTGGGTTGAAGAGCTCAGTTTAATGGTGAAAACAAAGCAAAAGGCTGAAATTCAAGCATTGAGTTCATTTGGTTTTCAGTATTTGTCAGAGGTTTATTTGCCATTGAAGCTGCAGCAGAAGGATTGGCTGTGA

Coding sequence (CDS)

ATGGCCGACAAGAGAAAACGCCGGCGATCTGAACTGAATTCCGAAGACGAAGCTCAACTTCCCTTCAAGAACAAACTCAAGCCTGATTCCTTCATTCTTCAAATTCTCAAAGAGCTCAGTGACGCCTCCACTGCCTCATCTTCCTCTTCATCCAAAACCCTTGACGACCTCGGCCTCTCCTCCTCCTGCCGCGAGGTGACCGATCTTTCGCTTTCGTCCGTGCAAGCCACAATTGAGTCTGTGATCCTTAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCCTTCGACGTTCCTTCTCGATCGGGGGCCAACCAGTTGTACGTTCCAGAGCTCGATCGAATCGTTTTGAAAGATAAAACTGCCCTCCGTCCCTACGCCAATATTTCTACTGTCCGAAAATCCACCATTACTACTCGCATTCTTCAGCTTGTCCACCAGCTCTGCATAAAAAACATCCACGTAACCAAGCGAGATCTGTTCTACACGGATGTGAAGCTCTTCCAGGATCAGACTCAGTCAGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGTTGTACAAGGTCGAGTCTCAATGTGATTGCTGCAGAGAAAGGGGTGGTTGTGGGAAGACTAATTTTTAGTGACAATGGAGATATGATAGATTGTACTAAAATGGGTATGGGAGGAAAAGCGATTCCACCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATACTCTTAGTTGAGAAAGATGCTGCTTATATTAGGTTAGCTGAGGATAGATTCTACAATCGTTTTCCATGTATAATTGTGACGGCTAAGGGACAGCCAGATGTGGCCACAAGATTGTTCTTGAGGAAGATGAAGATGGAGCTGAAGCTCCCAGTGCTTGCCCTTGTGGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGGTGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTGGGGATTAGGCCGAGCGATTTGGATAAATATAAGATACCTGAGCAGTGCAGGTTACCAATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTCAAGAAGAATCCTGGTTGGGTTGAAGAGCTCAGTTTAATGGTGAAAACAAAGCAAAAGGCTGAAATTCAAGCATTGAGTTCATTTGGTTTTCAGTATTTGTCAGAGGTTTATTTGCCATTGAAGCTGCAGCAGAAGGATTGGCTGTGA

Protein sequence

MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLSSSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKDKTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL*

Homology

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BLAST of CsaV3_4G024390 vs. NCBI nr
Match: XP_004142105.1 (DNA topoisomerase 6 subunit A [Cucumis sativus] >KGN54191.1 hypothetical protein Csa_018095 [Cucumis sativus])

HSP 1 Score: 812.8 bits (2098), Expect = 1.4e-231
Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60
           MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

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BLAST of CsaV3_4G024390 vs. NCBI nr
Match: XP_008447225.1 (PREDICTED: DNA topoisomerase 6 subunit A [Cucumis melo] >KAA0047308.1 DNA topoisomerase 6 subunit A [Cucumis melo var. makuwa])

HSP 1 Score: 799.7 bits (2064), Expect = 1.2e-227
Identity = 413/420 (98.33%), Postives = 415/420 (98.81%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60
           MADKRKRRRSELN EDEAQLPFKNKLK DSFILQILKELSD+S  SSSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPEDEAQLPFKNKLKADSFILQILKELSDSSAVSSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRS ANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

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BLAST of CsaV3_4G024390 vs. NCBI nr
Match: XP_038881252.1 (DNA topoisomerase 6 subunit A [Benincasa hispida])

HSP 1 Score: 792.7 bits (2046), Expect = 1.5e-225
Identity = 409/420 (97.38%), Postives = 413/420 (98.33%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60
           MADKRKRRRSE N + EAQLPFK  LKPDSFILQILKE SD+STASSSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSEPNPDGEAQLPFKKSLKPDSFILQILKEFSDSSTASSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQ+TIESVILKIARSILSGNGFAFDVPSRS ANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIESVILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of CsaV3_4G024390 vs. NCBI nr
Match: XP_022143741.1 (DNA topoisomerase 6 subunit A [Momordica charantia])

HSP 1 Score: 788.5 bits (2035), Expect = 2.9e-224
Identity = 404/420 (96.19%), Postives = 413/420 (98.33%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60
           MADKRKRRRSELN +DEAQLPFKN+LKPDS ILQI+KE  D STA SSSSSKTL+DLGLS
Sbjct: 1   MADKRKRRRSELNPDDEAQLPFKNRLKPDSAILQIIKEFGDCSTAPSSSSSKTLEDLGLS 60

Query: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120
           S+CREVTDLSLSSVQ+TIES+ILKIARSILSGNGFAFDVPSRS ANQLYVPELDRIVLKD
Sbjct: 61  STCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCMKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of CsaV3_4G024390 vs. NCBI nr
Match: XP_022950775.1 (DNA topoisomerase 6 subunit A [Cucurbita moschata] >KAG6603699.1 DNA topoisomerase 6 subunit A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033876.1 DNA topoisomerase 6 subunit A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 785.8 bits (2028), Expect = 1.9e-223
Identity = 405/420 (96.43%), Postives = 409/420 (97.38%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60
           MADKRKRRRSELN + EAQLPFKN LK DS ILQILKE SD STA SSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPDGEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQ+TIE +ILKIARSILSGNGFAFDVPSRS ANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of CsaV3_4G024390 vs. ExPASy Swiss-Prot
Match: Q9LZ03 (DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana OX=3702 GN=TOP6A PE=1 SV=1)

HSP 1 Score: 698.7 bits (1802), Expect = 3.9e-200
Identity = 360/430 (83.72%), Postives = 395/430 (91.86%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEA-QLPFKNKLKPDSFILQILKELSDAS---------TASSSSS 60
           MADK+KR+RS+   +DEA +LPFK+ L+ D  I ++LK    +S          +SSSS 
Sbjct: 1   MADKKKRKRSK---DDEAEELPFKSILESDDVITELLKSYISSSIKAAAGAGGASSSSSK 60

Query: 61  SKTLDDLGLSSSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYV 120
             TL DL LSSSCREV DLSLSSVQ  IE+VI++IARSIL+G+GF+F VPSR+ +NQLYV
Sbjct: 61  PLTLADLSLSSSCREVADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYV 120

Query: 121 PELDRIVLKDKTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQ 180
           PELDRIVLKDK+ LRP+A++S+VRK+TITTRIL L+HQLC++NIHVTKRDLFYTDVKLFQ
Sbjct: 121 PELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQ 180

Query: 181 DQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPP 240
           DQTQSD+VLDDVSC+LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPP
Sbjct: 181 DQTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPP 240

Query: 241 NIDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKM 300
           NIDRVGDMQSDA+FILLVEKDAAY+RLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKM
Sbjct: 241 NIDRVGDMQSDAMFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKM 300

Query: 301 ELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQ 360
           ELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQ
Sbjct: 301 ELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQ 360

Query: 361 CRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYL 420
           CRLPMTEQDIKTGKD+LEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYL
Sbjct: 361 CRLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYL 420

[Close]

BLAST of CsaV3_4G024390 vs. ExPASy Swiss-Prot
Match: A2XFC1 (DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 PE=1 SV=2)

HSP 1 Score: 572.4 bits (1474), Expect = 4.2e-162
Identity = 290/409 (70.90%), Postives = 350/409 (85.57%), Query Frame = 0


Query: 23  KNKLKPDSFILQILKELSDA--------STASSSSSSKTL---DDLGLSSSCREVTDLSL 82
           ++KL+PD+ IL  L+ L+ A        S++SSSS+SK L   DD   ++S   V D   
Sbjct: 36  RSKLRPDASILATLRSLASACSKSKPAGSSSSSSSASKALAAEDD--PAASYIVVADQDS 95

Query: 83  SSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKDKTALRPYANIS 142
           +SV + I  ++L  ARSILSG GF+F VPSR+ +NQ+Y+P+LDRIVL  + + RP+AN++
Sbjct: 96  ASVTSRINRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVRRESARPFANVA 155

Query: 143 TVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRS 202
           T RK+TIT R+L LVH +  + IHVTKRDLFYTDVKLF DQ QSD+VLDDVSC+LGCTRS
Sbjct: 156 TARKATITARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAVLDDVSCMLGCTRS 215

Query: 203 SLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKD 262
           SL+V+A+EKGVVVGRL F+D+GD IDCT+MG+GGKAIPPNIDRV  ++SDALFILLVEKD
Sbjct: 216 SLHVVASEKGVVVGRLTFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFILLVEKD 275

Query: 263 AAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILS 322
           AA++RLAEDRFYNRFPCII+TAKGQPDVATRLFLR++K+ELKLPVLALVDSDPYGLKILS
Sbjct: 276 AAFMRLAEDRFYNRFPCIILTAKGQPDVATRLFLRRLKVELKLPVLALVDSDPYGLKILS 335

Query: 323 VYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDF 382
           VY CGSKNMSYDSANLTTPDIKWLG+RPSDLDKY++PEQCRLPMT+ DIK GK+LLEEDF
Sbjct: 336 VYMCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDF 395

Query: 383 VKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           VK+N GWV+EL  M++T+QKAEIQALSSFGFQYL+EVYLPLKLQQ+DW+
Sbjct: 396 VKQNEGWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI 442

[Close]

BLAST of CsaV3_4G024390 vs. ExPASy Swiss-Prot
Match: Q0DSV9 (Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPO11-3 PE=2 SV=2)

HSP 1 Score: 572.4 bits (1474), Expect = 4.2e-162
Identity = 290/409 (70.90%), Postives = 350/409 (85.57%), Query Frame = 0


Query: 23  KNKLKPDSFILQILKELSDA--------STASSSSSSKTL---DDLGLSSSCREVTDLSL 82
           ++KL+PD+ IL  L+ L+ A        S++SSSS+SK L   DD   ++S   V D   
Sbjct: 36  RSKLRPDASILATLRSLASACSKSKPAGSSSSSSSASKALAAEDD--PAASYIVVADQDS 95

Query: 83  SSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKDKTALRPYANIS 142
           +SV + I  ++L  ARSILSG GF+F VPSR+ +NQ+Y+P+LDRIVL  + + RP+AN++
Sbjct: 96  ASVTSRINRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVRRESARPFANVA 155

Query: 143 TVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRS 202
           T RK+TIT R+L LVH +  + IHVTKRDLFYTDVKLF DQ QSD+VLDDVSC+LGCTRS
Sbjct: 156 TARKATITARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAVLDDVSCMLGCTRS 215

Query: 203 SLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKD 262
           SL+V+A+EKGVVVGRL F+D+GD IDCT+MG+GGKAIPPNIDRV  ++SDALFILLVEKD
Sbjct: 216 SLHVVASEKGVVVGRLTFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFILLVEKD 275

Query: 263 AAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILS 322
           AA++RLAEDRFYNRFPCII+TAKGQPDVATRLFLR++K+ELKLPVLALVDSDPYGLKILS
Sbjct: 276 AAFMRLAEDRFYNRFPCIILTAKGQPDVATRLFLRRLKVELKLPVLALVDSDPYGLKILS 335

Query: 323 VYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDF 382
           VY CGSKNMSYDSANLTTPDIKWLG+RPSDLDKY++PEQCRLPMT+ DIK GK+LLEEDF
Sbjct: 336 VYMCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDF 395

Query: 383 VKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           VK+N GWV+EL  M++T+QKAEIQALSSFGFQYL+EVYLPLKLQQ+DW+
Sbjct: 396 VKQNEGWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI 442

[Close]

BLAST of CsaV3_4G024390 vs. ExPASy Swiss-Prot
Match: Q9Y5K1 (Meiotic recombination protein SPO11 OS=Homo sapiens OX=9606 GN=SPO11 PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.7e-65
Identity = 130/355 (36.62%), Postives = 219/355 (61.69%), Query Frame = 0


Query: 70  SLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKDKTALRPYAN 129
           S S V A+IE++I  I  S+      AF + +RS    +   +   + +      R   +
Sbjct: 43  SSSEVLASIENIIQDIITSLARNEAPAFTIDNRSSWENIKFEDSVGLQMVSHCTTRKIKS 102

Query: 130 IS--TVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILG 189
            S  + +K ++  +IL ++++L   N + TKRD++YTD +LF +QT  D++++D+SC+L 
Sbjct: 103 DSPKSAQKFSLILKILSMIYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLK 162

Query: 190 CTRSSLNVIAAEKGVVVGRLIF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFIL 249
            +R SL++++  KG++ G L +  ++G  ++CT  G    A+P NI  + ++ +DA F+L
Sbjct: 163 VSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCT-CGATAVAVPSNIQGIRNLVTDAKFVL 222

Query: 250 LVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 309
           +VEKDA + RL +D F N+  PCI++T KG PD+ TRL ++K+     +PV  LVD+DP+
Sbjct: 223 IVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPH 282

Query: 310 GLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKD 369
           G++I+ +Y  GS +MS+++ +LT P I+WLG+ PSDL +  +P+   +P+T++D      
Sbjct: 283 GIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKLDS 342

Query: 370 LLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           +L   +V   P W +E+ +M  +K KAEIQAL+     YLS VYLP KL+   W+
Sbjct: 343 ILRRPYVTCQPFWRKEMEIMADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI 396

[Close]

BLAST of CsaV3_4G024390 vs. ExPASy Swiss-Prot
Match: Q9WTK8 (Meiotic recombination protein SPO11 OS=Mus musculus OX=10090 GN=Spo11 PE=1 SV=2)

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-64
Identity = 135/363 (37.19%), Postives = 212/363 (58.40%), Query Frame = 0


Query: 70  SLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKDKTALRPYAN 129
           S S V   IE++I  I +S+      AF + +RS          + I+  D   LR    
Sbjct: 43  SSSEVLTAIENIIQDIIKSLARNEVPAFTIDNRS--------SWENIMFDDSVGLRMIPQ 102

Query: 130 IST----------VRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVL 189
            +T          V+K  +  ++L ++++L   + + TKRD++YTD +LF +Q   DS +
Sbjct: 103 CTTRKIRSDSPKSVKKFALILKVLSMIYKLIQSDTYATKRDIYYTDSQLFGNQAAVDSAI 162

Query: 190 DDVSCILGCTRSSLNVIAAEKGVVVGRLIF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDM 249
           DD+SC+L   R SL+V++  KG++ G L +  ++G  + CT       A+P NI  +  +
Sbjct: 163 DDISCMLKVPRRSLHVLSTSKGLIAGNLRYMEEDGTRVQCT-CSATATAVPTNIQGMQHL 222

Query: 250 QSDALFILLVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLRKMKMELKLPVL 309
            +DA F+L+VEKDA + RL +D F +R  PCI+VT KG PD+ TRL ++K+     +PV 
Sbjct: 223 ITDAKFLLIVEKDATFQRLLDDNFCSRMSPCIMVTGKGVPDLNTRLLVKKLWDTFHIPVF 282

Query: 310 ALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTE 369
            LVD+DPYG++I+ +Y  GS +MS+++ NLT P I+WLG+ PSD+ +  IP+   +P+T+
Sbjct: 283 TLVDADPYGIEIMCIYKYGSMSMSFEAHNLTIPTIRWLGLLPSDIQRLNIPKDSLIPLTK 342

Query: 370 QDIKTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQK 421
            D      +L+  ++   P W +EL +M  +K KAEIQAL+     YLS VYLP KL+  
Sbjct: 343 HDQMKLDSILKRPYITYQPLWKKELEMMADSKMKAEIQALTLLSSDYLSRVYLPNKLRFG 396

[Close]

BLAST of CsaV3_4G024390 vs. ExPASy TrEMBL
Match: A0A0A0L216 (DNA topoisomerase 6 subunit A OS=Cucumis sativus OX=3659 GN=TOP6A PE=3 SV=1)

HSP 1 Score: 812.8 bits (2098), Expect = 6.9e-232
Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60
           MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of CsaV3_4G024390 vs. ExPASy TrEMBL
Match: A0A5A7TWM5 (DNA topoisomerase 6 subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=TOP6A PE=3 SV=1)

HSP 1 Score: 799.7 bits (2064), Expect = 6.0e-228
Identity = 413/420 (98.33%), Postives = 415/420 (98.81%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60
           MADKRKRRRSELN EDEAQLPFKNKLK DSFILQILKELSD+S  SSSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPEDEAQLPFKNKLKADSFILQILKELSDSSAVSSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRS ANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of CsaV3_4G024390 vs. ExPASy TrEMBL
Match: A0A1S3BGY2 (DNA topoisomerase 6 subunit A OS=Cucumis melo OX=3656 GN=LOC103489716 PE=3 SV=1)

HSP 1 Score: 799.7 bits (2064), Expect = 6.0e-228
Identity = 413/420 (98.33%), Postives = 415/420 (98.81%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60
           MADKRKRRRSELN EDEAQLPFKNKLK DSFILQILKELSD+S  SSSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPEDEAQLPFKNKLKADSFILQILKELSDSSAVSSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRS ANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of CsaV3_4G024390 vs. ExPASy TrEMBL
Match: A0A6J1CR74 (DNA topoisomerase 6 subunit A OS=Momordica charantia OX=3673 GN=LOC111013584 PE=3 SV=1)

HSP 1 Score: 788.5 bits (2035), Expect = 1.4e-224
Identity = 404/420 (96.19%), Postives = 413/420 (98.33%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60
           MADKRKRRRSELN +DEAQLPFKN+LKPDS ILQI+KE  D STA SSSSSKTL+DLGLS
Sbjct: 1   MADKRKRRRSELNPDDEAQLPFKNRLKPDSAILQIIKEFGDCSTAPSSSSSKTLEDLGLS 60

Query: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120
           S+CREVTDLSLSSVQ+TIES+ILKIARSILSGNGFAFDVPSRS ANQLYVPELDRIVLKD
Sbjct: 61  STCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCMKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of CsaV3_4G024390 vs. ExPASy TrEMBL
Match: A0A6J1GGP2 (DNA topoisomerase 6 subunit A OS=Cucurbita moschata OX=3662 GN=LOC111453780 PE=3 SV=1)

HSP 1 Score: 785.8 bits (2028), Expect = 9.0e-224
Identity = 405/420 (96.43%), Postives = 409/420 (97.38%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60
           MADKRKRRRSELN + EAQLPFKN LK DS ILQILKE SD STA SSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPDGEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQ+TIE +ILKIARSILSGNGFAFDVPSRS ANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of CsaV3_4G024390 vs. TAIR 10
Match: AT5G02820.1 (Spo11/DNA topoisomerase VI, subunit A protein )

HSP 1 Score: 698.7 bits (1802), Expect = 2.8e-201
Identity = 360/430 (83.72%), Postives = 395/430 (91.86%), Query Frame = 0


Query: 1   MADKRKRRRSELNSEDEA-QLPFKNKLKPDSFILQILKELSDAS---------TASSSSS 60
           MADK+KR+RS+   +DEA +LPFK+ L+ D  I ++LK    +S          +SSSS 
Sbjct: 1   MADKKKRKRSK---DDEAEELPFKSILESDDVITELLKSYISSSIKAAAGAGGASSSSSK 60

Query: 61  SKTLDDLGLSSSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYV 120
             TL DL LSSSCREV DLSLSSVQ  IE+VI++IARSIL+G+GF+F VPSR+ +NQLYV
Sbjct: 61  PLTLADLSLSSSCREVADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYV 120

Query: 121 PELDRIVLKDKTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQ 180
           PELDRIVLKDK+ LRP+A++S+VRK+TITTRIL L+HQLC++NIHVTKRDLFYTDVKLFQ
Sbjct: 121 PELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQ 180

Query: 181 DQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPP 240
           DQTQSD+VLDDVSC+LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPP
Sbjct: 181 DQTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPP 240

Query: 241 NIDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKM 300
           NIDRVGDMQSDA+FILLVEKDAAY+RLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKM
Sbjct: 241 NIDRVGDMQSDAMFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKM 300

Query: 301 ELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQ 360
           ELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQ
Sbjct: 301 ELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQ 360

Query: 361 CRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYL 420
           CRLPMTEQDIKTGKD+LEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYL
Sbjct: 361 CRLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYL 420

[Close]

BLAST of CsaV3_4G024390 vs. TAIR 10
Match: AT3G13170.1 (Spo11/DNA topoisomerase VI, subunit A protein )

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-57
Identity = 124/314 (39.49%), Postives = 183/314 (58.28%), Query Frame = 0


Query: 111 PELDRIVLKDKTALRPYANISTVRKSTIT------TRILQLVHQLCIKNIHVTKRDLFYT 170
           PE D +   DK   +    I T++K   T       R+L +V QL  +N H +KRD++Y 
Sbjct: 48  PEADCLCSSDKPKGQ---EIFTLKKEPQTYRIDMLLRVLLIVQQLLQENRHASKRDIYYM 107

Query: 171 DVKLFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMG 230
               F+ Q+  D  + D+  +  C+R +LNV++   G+V+G L F + G   DC      
Sbjct: 108 HPSAFKAQSIVDRAIGDICILFQCSRYNLNVVSVGNGLVMGWLKFREAGRKFDCLNSLNT 167

Query: 231 GKAIPPNIDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLF 290
              +P  ++ V D+ S A +IL+VEK+  + RLA D F     CI++T +G PDV+TR F
Sbjct: 168 AYPVPVLVEEVEDIVSLAEYILVVEKETVFQRLANDMFCKTNRCIVITGRGYPDVSTRRF 227

Query: 291 LRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDK 350
           LR +  +L LPV  LVD DPYG +IL+ Y  GS  M+YD  +L  PD+KWLG  PSD + 
Sbjct: 228 LRLLMEKLHLPVHCLVDCDPYGFEILATYRFGSMQMAYDIESLRAPDMKWLGAFPSDSEV 287

Query: 351 YKIPEQCRLPMTEQDIKTGKDLLEEDFVKKN-PGWVEELSLMVKTKQKAEIQALSSFGFQ 410
           Y +P+QC LP+TE+D K  + +L   ++K+  P W  EL  M+K   K EI+ALS     
Sbjct: 288 YSVPKQCLLPLTEEDKKRTEAMLLRCYLKREMPQWRLELETMLKRGVKFEIEALSVHSLS 347

Query: 411 YLSEVYLPLKLQQK 418
           +LSEVY+P K++++
Sbjct: 348 FLSEVYIPSKIRRE 358

[Close]

BLAST of CsaV3_4G024390 vs. TAIR 10
Match: AT1G63990.1 (sporulation 11-2 )

HSP 1 Score: 189.1 bits (479), Expect = 7.2e-48
Identity = 128/391 (32.74%), Postives = 211/391 (53.96%), Query Frame = 0


Query: 45  ASSSSSSKTLDDLGLSSSCREVTDLSL-SSVQATIESVILKIARSILSGNGFAFDVP--- 104
           +S  SS K   D  LS       D+ L    +A IE  +L + R + S +    D+    
Sbjct: 4   SSGLSSMKFFSDQHLS-----YADILLPHEARARIEVSVLNLLRILNSPDPAISDLSLIN 63

Query: 105 ---SRSGANQLYVPELDRIVLKDKTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVT 164
              S S  N+  + ++  I L          N  T +      +++++  Q+ ++   VT
Sbjct: 64  RKRSNSCINKGILTDVSYIFLSTSFTKSSLTNAKTAKAFVRVWKVMEICFQILLQEKRVT 123

Query: 165 KRDLFY----TDVKLFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNG 224
           +R+LFY         F  Q + +  + DV  +L C+R SL ++A+ +G+V GRL   + G
Sbjct: 124 QRELFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGLVAGRLFLQEPG 183

Query: 225 -DMIDCTKMGMGGKAIPPNIDRVGD--MQSDALFILLVEKDAAYIRLAEDRFYNRFPCII 284
            + +DC+  G  G AI  +++ + +  M++DA +I++VEK A + RL EDR +N  PC+ 
Sbjct: 184 KEAVDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRVFNHIPCVF 243

Query: 285 VTAKGQPDVATRLFLRKMKMEL-KLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTT 344
           +TAKG PD+ATR FL +M      LP+L LVD +P GL IL  +  GS  M  ++     
Sbjct: 244 ITAKGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMGLEAYRYAC 303

Query: 345 PDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELSLMVKTK 404
            ++KW+G+R  DL+   IPE+  +P+  +D +  K LL    +++N  ++EELSLMV+T 
Sbjct: 304 -NVKWIGLRGDDLN--LIPEESLVPLKPKDSQIAKSLLSSKILQEN--YIEELSLMVQTG 363

Query: 405 QKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           ++AEI+AL   G+ YL + Y+  K+ Q  ++
Sbjct: 364 KRAEIEALYCHGYNYLGK-YIATKIVQGKYI 383

The following BLAST results are available for this feature:

BLAST of CsaV3_4G024390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142105.1	1.4e-231	100.00	DNA topoisomerase 6 subunit A [Cucumis sativus] >KGN54191.1 hypothetical protein...	[more]
XP_008447225.1	1.2e-227	98.33	PREDICTED: DNA topoisomerase 6 subunit A [Cucumis melo] >KAA0047308.1 DNA topois...	[more]
XP_038881252.1	1.5e-225	97.38	DNA topoisomerase 6 subunit A [Benincasa hispida]	[more]
XP_022143741.1	2.9e-224	96.19	DNA topoisomerase 6 subunit A [Momordica charantia]	[more]
XP_022950775.1	1.9e-223	96.43	DNA topoisomerase 6 subunit A [Cucurbita moschata] >KAG6603699.1 DNA topoisomera...	[more]

BLAST of CsaV3_4G024390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ03	3.9e-200	83.72	DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana OX=3702 GN=TOP6A PE=1 SV=1	[more]
A2XFC1	4.2e-162	70.90	DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 ...	[more]
Q0DSV9	4.2e-162	70.90	Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPO11-3 P...	[more]
Q9Y5K1	1.7e-65	36.62	Meiotic recombination protein SPO11 OS=Homo sapiens OX=9606 GN=SPO11 PE=1 SV=1	[more]
Q9WTK8	1.1e-64	37.19	Meiotic recombination protein SPO11 OS=Mus musculus OX=10090 GN=Spo11 PE=1 SV=2	[more]

BLAST of CsaV3_4G024390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L216	6.9e-232	100.00	DNA topoisomerase 6 subunit A OS=Cucumis sativus OX=3659 GN=TOP6A PE=3 SV=1	[more]
A0A5A7TWM5	6.0e-228	98.33	DNA topoisomerase 6 subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=TOP6A PE...	[more]
A0A1S3BGY2	6.0e-228	98.33	DNA topoisomerase 6 subunit A OS=Cucumis melo OX=3656 GN=LOC103489716 PE=3 SV=1	[more]
A0A6J1CR74	1.4e-224	96.19	DNA topoisomerase 6 subunit A OS=Momordica charantia OX=3673 GN=LOC111013584 PE=...	[more]
A0A6J1GGP2	9.0e-224	96.43	DNA topoisomerase 6 subunit A OS=Cucurbita moschata OX=3662 GN=LOC111453780 PE=3...	[more]

BLAST of CsaV3_4G024390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02820.1	2.8e-201	83.72	Spo11/DNA topoisomerase VI, subunit A protein	[more]
AT3G13170.1	1.3e-57	39.49	Spo11/DNA topoisomerase VI, subunit A protein	[more]
AT1G63990.1	7.2e-48	32.74	sporulation 11-2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002815	Spo11/DNA topoisomerase VI subunit A	PRINTS	PR01550	TOP6AFAMILY	coord: 269..290 score: 49.43 coord: 158..169 score: 53.65 coord: 172..189 score: 39.24 coord: 301..317 score: 55.15 coord: 190..205 score: 44.92 coord: 245..262 score: 51.04
IPR002815	Spo11/DNA topoisomerase VI subunit A	PANTHER	PTHR10848	MEIOTIC RECOMBINATION PROTEIN SPO11	coord: 46..420
IPR004085	DNA topoisomerase VI, subunit A	PRINTS	PR01552	TPISMRASE6A	coord: 391..414 score: 42.19 coord: 166..183 score: 32.64 coord: 100..120 score: 30.95 coord: 275..295 score: 47.62 coord: 219..237 score: 34.87
IPR004085	DNA topoisomerase VI, subunit A	HAMAP	MF_00132	Top6A	coord: 68..420 score: 36.319901
IPR013049	Spo11/DNA topoisomerase VI, subunit A, N-terminal	PFAM	PF04406	TP6A_N	coord: 134..195 e-value: 2.2E-20 score: 72.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 60..198 e-value: 6.9E-39 score: 135.1
None	No IPR available	GENE3D	3.40.1360.10		coord: 199..420 e-value: 4.3E-78 score: 263.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR10848:SF4	DNA TOPOISOMERASE 6 SUBUNIT A	coord: 46..420
IPR034136	Topoisomerase 6 subunit A/Spo11, TOPRIM domain	CDD	cd00223	TOPRIM_TopoIIB_SPO	coord: 244..404 e-value: 1.93884E-72 score: 222.515
IPR036078	Spo11/DNA topoisomerase VI subunit A superfamily	SUPERFAMILY	56726	DNA topoisomerase IV, alpha subunit	coord: 134..420

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G024390.1	CsaV3_4G024390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0006265	DNA topological change
biological_process	GO:0042138	meiotic DNA double-strand break formation
cellular_component	GO:0005694	chromosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity