CsaV3_4G024280 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G024280
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	heterogeneous nuclear ribonucleoprotein F
Location	chr4: 14201225 .. 14204912 (+)
RNA-Seq Expression	CsaV3_4G024280
Synteny	CsaV3_4G024280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAGGAAACCCTAATAAATTGTTGAAAGTGCCAAAGTGAATTTTTCCTGTTAGATATTTGTTGAGCTTCTTCCTCAAAATTCATGGGCCAGCCCGGAACGAAATCGGAAGGGTAGGGATCCATTGAGGCTTAACCGGAGGTCTCTTTCAGTTCCTTTCCTTCCTTCCTTCACCGTATTTGGATTTTGGAATTTCGATTCAGATTTCACAATCCAACTCAAGCTGCGACCCCTTCAACAACAATAACCAACTGGGTTATCCCCTATCAGCATGAACATGTTCTACCGAGGGTAACTTTCCCCGATCTCTATTCTCATCTTTTTCTTCTTGCTCTGTTTCGTTCCCTGTTAATTCTCACAATTTTACGTCGGTTTTGGGCTCTGGGTTCTCTTTTTTTGCTCTATATTTCATGTAATATATTGACTAATTGGGAATTCTTAGTTGTTATTATTTACTGATTATTATTGCGAACAATTATCGGTTTCCTCATCTTTCACTTCAAGAATTTTCTGCTTTCTTTTCTCGGATTGGGATTTTTTGTGGGTGTGATCGTGTGGGTGAATGTTGTTCTGGTGGAGTTTGTTTTTTTTTTTGGGTTTTTATATCTTTCTGCAAGCTCTGTACAATAGGATGGGGAGAAACAATTTAAATATGGTGTATGATTCAACTAGGAAATTAGAATAAGACCGAGGTTTTAACTTGAAAATTTAGTGTTTTTTGTTTGTTTTTGTGAGTCCTGTAGGATGATTGGTGGGCATGTTTATATGATTTAGAAAATTGATTTATTGGATTGATTGTCATCAATTAACTACTGATGTTGGTAACTCTGGGGTTTTAATGTTGACTGTATTTATAGTACACGATAATGTTTTAAATGGGAAGAAGACGCTTGATTCCCTTTGCGAGTCTGCGATAGATTGAAAAATATGGAACAGACAAGACGACCGAATTAGTTCAACCACCAAAGAAGCTTTAAATTGAAACTCTACTATATACTAGAAACAGAAATTATTTGGAGGAAGAAAGTCACCACTGAACGAAAAGTGTTAGGAACAGTGTATCAATTGTTTGCTAAGAATAAAACTTCAATTGGCTCTTTACAATGGAATTGGAGGAGGCCTTTGATATGGTTGATTGAAATTTATTGAATCAATATGCTATTGGAGAAAAAGGACTTTGGCCTGCAATTTTCTATTGTTTAACGCAAAATCTTAGGGTAGAATTAAAGCTTCAAGGGGGCGAGACTCTCAGTTTACTGAAATTTTGTCCTATTCCCTACCCTGAGGAGGTCACTCAGGTGGACAATAGCAAGAGGACTAACAAACTCTCATAGGGACCCAAACTAACTCTTATTCAATATGTTTTACCTAGAATTTGAAGATACACCTCTCTTTGAAATTCCTATTTCTACTGCCATGACGATTCCATGTCAACAGGCTGCCACCTTGTGTCATGTAACATTCATGATCTTCCTCTAGGGGTTAGTATTGGCAATGTAATCAATCATAATCTGGATTCCGGCCCTCGTTTTTAAATGGTCGTAGAGATTCTCAAATGAACAAATTTGCTCTATCGCTAGGTCATTCATGAGACCTTTCTCACTGATTAATCTCATATGGCCATAACCCCTATACTATTTTACTATGAAAAACAAATGTAGTAAGAGAGCTGACTATCAGGATTGGAGAGTTAAACTTCTAATTTAATACTGAAGACATCTCAAGGATGAGGAACTCCCAAATATTCGAGAGCTCTTGCAGGAACTAGCTCATTTAGGACACTGACCAATCTGCTAGGAAGAAGAAATTTGGGGTCTGGACAAATATGTTCGCAAGATTGATACCTTTTAGGAGAGTTGTACTAAACACCTTTAAGGAGTTGCTCGCATGATTGCATCCCTCTTCTTTTAGTCTCCAATAATATGCAGAGTCATCTCTTCCTATGCTTCAATTATGTATCTAACCTCTGGAGAAACCCTCACTCTCTTGATTAGCCTCTACAAAAGAGGATGAAATAATCTGTGTCAGTTTATCTGCTCTTGTCTATAACCATGGTGAAGTTTAATGTAGTCCATTATCGGGGTTGGTGGTTGTGGAATAACTGAGGGTATTGGTATTTGGCAATGCATATTTGCAGTTGATTTAGAAGCGTCTGCCTTATATATATAAATGTATGTATGTATGTATGTATATTTATACACACATAGATATCTTCTGTGTTTTGGGAAACAGTGAAGTTTCCCACATTCGTTTAATATGGGAAACTTGAAATTGCAGATTAATATTTTTGTGGCCAAGAAAACATTAGATGTGTATAGGAGCCATCTATTTGTTACTGGAGCAATTAATTTGAGAAATGCTTTTGTTTGAATTTCAAAATATGTTATTATCTCCCAGGATGGGATATTGACAAGGTTCCTGTTTTTTGTGGATTTCTTGTTTCTGTTTGGACTAAAGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCGTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGACACCACCTATAATTCTATTCACTGTTCTTCTTCAACTACTATGTTGTTTTGCTTTTGGAGCCAATGAGATTTATGGAGTTAGAAGTGAATAGGAGAGCTAAGTTTGTTTTGTGTGCTTATGGTAACCATACATTCTCTGTACTTTCCAGGACCATTATTTGCCAGTCGAGCAGGTTGTTTCGCACTCGACTGCATGAATTTGTGAAAAGAATTTGGTTTAGTAGGCCTCTCTCTATATGATGTATTAACCGTTTCTCTGTGCTGATGCTTAAAATATCTCCACCCTTGTGTACTACAGCATTTGCTCGCACAAAATTTTCAAAATTTACAAGTTAGATCCTTATTTCAGGTAAATGCTGTACTTCAGTTTTGTTTTATAACCTCTGACATTTCCTTCTTTAAATTAAAGTTGAAAGGTGAGGGAGAAAGATTGAAAATTGGAAACTGTATGTGTAGGCAACAATTGAG

mRNA sequence

ATGAACATGTTCTACCGAGGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCGTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Coding sequence (CDS)

ATGAACATGTTCTACCGAGGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCGTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Protein sequence

MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR*

Homology

[Close]

BLAST of CsaV3_4G024280 vs. NCBI nr
Match: XP_004142112.1 (heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis melo] >KGN54181.1 hypothetical protein Csa_018007 [Cucumis sativus])

HSP 1 Score: 532.3 bits (1370), Expect = 2.3e-147
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]

BLAST of CsaV3_4G024280 vs. NCBI nr
Match: XP_038901811.1 (heterogeneous nuclear ribonucleoprotein F isoform X1 [Benincasa hispida])

HSP 1 Score: 528.5 bits (1360), Expect = 3.3e-146
Identity = 258/260 (99.23%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYAYVNQPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKD AEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDCAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]

BLAST of CsaV3_4G024280 vs. NCBI nr
Match: TYJ96136.1 (heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 516.9 bits (1330), Expect = 1.0e-142
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 8   SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 67
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF
Sbjct: 99  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 158

Query: 68  DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 127
           DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 159 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 218

Query: 128 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 187
           FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 219 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 278

Query: 188 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 247
           ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 279 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 338

Query: 248 SHEELDEAISRGR 261
           SHEELDEAISRGR
Sbjct: 339 SHEELDEAISRGR 351

[Close]

BLAST of CsaV3_4G024280 vs. NCBI nr
Match: KAA0041416.1 (heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 516.9 bits (1330), Expect = 1.0e-142
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 8   SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 67
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF
Sbjct: 58  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 117

Query: 68  DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 127
           DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 118 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 177

Query: 128 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 187
           FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 178 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 237

Query: 188 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 247
           ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 238 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 297

Query: 248 SHEELDEAISRGR 261
           SHEELDEAISRGR
Sbjct: 298 SHEELDEAISRGR 310

[Close]

BLAST of CsaV3_4G024280 vs. NCBI nr
Match: XP_022986707.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima])

HSP 1 Score: 505.8 bits (1301), Expect = 2.3e-139
Identity = 245/258 (94.96%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDCMETDVVEFFHGLD+VD+LFVHKNGKFTGEGFCVLGYPLQ+DFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           AGKDDILDFFKGF LSEDSIHLT NSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSSHEELDEAISRGR
Sbjct: 241 ELFPSSHEELDEAISRGR 258

[Close]

BLAST of CsaV3_4G024280 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-27
Identity = 73/199 (36.68%), Postives = 116/199 (58.29%), Query Frame = 0


Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of CsaV3_4G024280 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-27
Identity = 73/199 (36.68%), Postives = 116/199 (58.29%), Query Frame = 0


Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of CsaV3_4G024280 vs. ExPASy Swiss-Prot
Match: Q9Z2X1 (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 3.6e-26
Identity = 72/199 (36.18%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of CsaV3_4G024280 vs. ExPASy Swiss-Prot
Match: Q794E4 (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 3.6e-26
Identity = 72/199 (36.18%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of CsaV3_4G024280 vs. ExPASy Swiss-Prot
Match: Q5E9J1 (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 4.7e-26
Identity = 71/199 (35.68%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       D+A + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADTA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of CsaV3_4G024280 vs. ExPASy TrEMBL
Match: A0A0A0L205 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.1e-147
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]

BLAST of CsaV3_4G024280 vs. ExPASy TrEMBL
Match: A0A1S3BMM3 (heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC103491509 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.1e-147
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]

BLAST of CsaV3_4G024280 vs. ExPASy TrEMBL
Match: A0A5A7TH86 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00630 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 4.8e-143
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 8   SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 67
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF
Sbjct: 58  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 117

Query: 68  DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 127
           DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 118 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 177

Query: 128 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 187
           FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 178 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 237

Query: 188 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 247
           ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 238 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 297

Query: 248 SHEELDEAISRGR 261
           SHEELDEAISRGR
Sbjct: 298 SHEELDEAISRGR 310

[Close]

BLAST of CsaV3_4G024280 vs. ExPASy TrEMBL
Match: A0A5D3BB71 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001040 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 4.8e-143
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 8   SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 67
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF
Sbjct: 99  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 158

Query: 68  DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 127
           DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 159 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 218

Query: 128 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 187
           FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 219 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 278

Query: 188 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 247
           ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 279 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 338

Query: 248 SHEELDEAISRGR 261
           SHEELDEAISRGR
Sbjct: 339 SHEELDEAISRGR 351

[Close]

BLAST of CsaV3_4G024280 vs. ExPASy TrEMBL
Match: A0A6J1J8B6 (heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111484376 PE=4 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.1e-139
Identity = 245/258 (94.96%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDCMETDVVEFFHGLD+VD+LFVHKNGKFTGEGFCVLGYPLQ+DFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           AGKDDILDFFKGF LSEDSIHLT NSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSSHEELDEAISRGR
Sbjct: 241 ELFPSSHEELDEAISRGR 258

[Close]

BLAST of CsaV3_4G024280 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 373.2 bits (957), Expect = 1.7e-103
Identity = 190/295 (64.41%), Postives = 219/295 (74.24%), Query Frame = 0


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQG--SSYYGTSPGSGFMYNTSPYAYV--NQPPPFP 62
           MFYRG Y DG DGREMG KRQR++DQG    +YG  P SGFMYN  PY +V    PPPFP
Sbjct: 1   MFYRG-YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYN--PYGFVAPPPPPPFP 60

Query: 63  VVRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQ 122
            VRLRGLPFDC E DVVEFFHGLD+VD+LFVH+N K TGE FCVLGYPLQVDFALQ+NRQ
Sbjct: 61  AVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQ 120

Query: 123 NMGRRYVEIFRSNRQEYYKAVANEVFDAR------------------------------- 182
           NMGRRYVE+FRS +QEYYKA+ANEV ++R                               
Sbjct: 121 NMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRI 180

Query: 183 --GGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLT 242
             G SPRR   R++ +D+ K+  EHTG+LRLRGLP+SAGK+DILDFFK F LSED +H+T
Sbjct: 181 SGGSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVT 240

Query: 243 LNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 261
           +N EGRP+GEAFVEF N +DS+AAM KDR TLGSRYIELFPSS EEL+EA+SRGR
Sbjct: 241 VNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of CsaV3_4G024280 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 228.0 bits (580), Expect = 8.6e-60
Identity = 120/255 (47.06%), Postives = 168/255 (65.88%), Query Frame = 0


Query: 12  GGDGREMGAKRQRIVDQGSSY--YGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDC 71
           G  G E+G+KRQR++ Q + Y   GT P S       P+ Y      FPVVRLRGLPF+C
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGPTS-----FPPFGYAG---GFPVVRLRGLPFNC 69

Query: 72  METDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFR 131
            + D+ EFF GL+IVD+L V KNGKF+GE F V   P+QV+ ALQR+R NMGRRYVE+FR
Sbjct: 70  ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 129

Query: 132 SNRQEYYKAVANE----VFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGK 191
            ++Q+YY AVA E     ++ R   P     R+K   E K+  E+T VL++RGLPYS  K
Sbjct: 130 CSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNK 189

Query: 192 DDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 251
             I++FF G+ + +  + +    +G+ +GEAFVEF   ++++ AM+KD+M++GSRY+ELF
Sbjct: 190 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 249

Query: 252 PSSHEELDEAISRGR 261
           P++ EE   A +R R
Sbjct: 250 PTTREEARRAEARSR 254

[Close]

BLAST of CsaV3_4G024280 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-35
Identity = 71/158 (44.94%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 107 LQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANE----VFDARGGSPRRSAPRSKLND 166
           +QV+ ALQR+R NMGRRYVE+FR ++Q+YY AVA E     ++ R   P     R+K   
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFS 60

Query: 167 EVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSN 226
           E K+  E+T VL++RGLPYS  K  I++FF G+ + +  + +    +G+ +GEAFVEF  
Sbjct: 61  E-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFET 120

Query: 227 EQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 261
            ++++ AM+KD+M++GSRY+ELFP++ EE   A +R R
Sbjct: 121 GEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSR 157

[Close]

BLAST of CsaV3_4G024280 vs. TAIR 10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding )

HSP 1 Score: 44.3 bits (103), Expect = 1.8e-04
Identity = 26/93 (27.96%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 164 VKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPS-GEAFVEFSN 223
           V D    TG L +R LPY+A ++++++ F  F    + +HL L+ E + S G A++ +  
Sbjct: 286 VSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISE-VHLVLDKETKRSRGIAYILYLI 345

Query: 224 EQDSKAAMSK-DRMTLGSRYIELFPSSHEELDE 255
            + +  AM + D  +   R + + P+ H E  +
Sbjct: 346 PECAARAMEELDNSSFQGRLLHILPAKHRETSD 377

The following BLAST results are available for this feature:

BLAST of CsaV3_4G024280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142112.1	2.3e-147	100.00	heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PRED...	[more]
XP_038901811.1	3.3e-146	99.23	heterogeneous nuclear ribonucleoprotein F isoform X1 [Benincasa hispida]	[more]
TYJ96136.1	1.0e-142	100.00	heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0041416.1	1.0e-142	100.00	heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa]	[more]
XP_022986707.1	2.3e-139	94.96	heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima]	[more]

BLAST of CsaV3_4G024280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52597	3.2e-27	36.68	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]
Q60HC3	3.2e-27	36.68	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN...	[more]
Q9Z2X1	3.6e-26	36.18	Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=...	[more]
Q794E4	3.6e-26	36.18	Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnp...	[more]
Q5E9J1	4.7e-26	35.68	Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S...	[more]

BLAST of CsaV3_4G024280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L205	1.1e-147	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV...	[more]
A0A1S3BMM3	1.1e-147	100.00	heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC10349150...	[more]
A0A5A7TH86	4.8e-143	100.00	Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A5D3BB71	4.8e-143	100.00	Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A6J1J8B6	1.1e-139	94.96	heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CsaV3_4G024280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20890.1	1.7e-103	64.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.1	8.6e-60	47.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	2.5e-35	44.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G19610.1	1.8e-04	27.96	nucleotide binding;nucleic acid binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 59..128 e-value: 0.12 score: 14.6 coord: 173..245 e-value: 2.0E-8 score: 44.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 175..242 e-value: 8.4E-10 score: 38.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 172..260 score: 10.189634
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 46..145 e-value: 8.5E-20 score: 72.6 coord: 153..259 e-value: 3.1E-30 score: 106.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..166
None	No IPR available	PANTHER	PTHR13976:SF76	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 3..260
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 3..260
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 173..245 e-value: 4.67253E-31 score: 108.413
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 59..128 e-value: 2.06295E-21 score: 82.9903
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 51..137
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 164..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G024280.1	CsaV3_4G024280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding