CsaV3_4G023550 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G023550
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic
Location	chr4: 13715240 .. 13718684 (+)
RNA-Seq Expression	CsaV3_4G023550
Synteny	CsaV3_4G023550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAAAATTATTATATTTTATAAATATTTTAAAAGACGATTTTGTCAGTTGTAATAATAAGGAGTTTATTTGCGTGGTAGTTAATAGAAGGAGAACATCCAAAATTAAGTGTGAAGATGGATTTTGGTATATGGTGGAAATTAAGGTGAACGAGTGGCGCAAACCACAGAGAAGATCATGGCTTCTTCTTCTCATCTATCCGCCATTCCCCTCCGCCGTCCCTCTTCCTCCTCTCCACCTTCCTTATCCCACTGTGAGCTCTCTCTCTCTCTCTCTGCAACTTTCTTGGAATTTATGCCCAATTGTCGACTATACTGTATCCTTGCATTGTTGCATACTTCTATCCCCCATCTCCTCTGTTCAATTTATATTTTTGTATTTCTTTTCCGTTTTGCCCATTCAGTTGTTTTGTTTCTTACTTATCGGTGGAAGAATGTGATTTTTCTTTTTGGTTGAAAAGCTGATTTTCCTTCGGTCATTTCTTTTTTGTGGACTGCTTGTGTAATCTTATCCCTTTCTTCTCGAGTTTCGTTTTTGGTGTTTGTCATCCTCATCTCCTATTGTTATTTCGGGTTATCTTAATCTTGCTCTGTCACATGTTTTGTGCTGCCTGATTTGCTTATATTCATTTTCCCTTTATGCTCTGTGATAATACTATCTTACTCAGCTGGTTAACAAGTGTTAGAATTACAAATTTACTACAAGTAATCTTTTTTCTCAGTTCCAAAGGGGTATTTTGTTTAAGTAGTTCATCAGATCTCCTTCCAATAGTTATGGAAGGTCATTCTAAATTGAAGTTGCCAACGCTTTCCTTTAAACAGAATGGAACCCCATCGTCAGGAGCTCATCCCATAAGTTCTATTGCCTTATATGAGATGCTGGACTTGTTAACGTTTTCATGTGTATGTCAATCTAATGCCTAGATTGGTGCGATTTTGCAGTAAATTAGAAGGTTAAGTCAAGATAGCATTACATGATGAAATGCTTTGGTAGTAGTGCAGAATCATAACGATATTTTCTGGTTCTTGTACTAATCTGACATTGATTTGTATTGGACTGTCTTAAATATATCGATCATTCCATGGAAAAGCTTTGACACTCATTTTTCTGAATTCAGCAGCTAACTTAAAGCCTGTTGTGCTTCATGTGACATCGAATTCTGATGATGAAAGCTGCAGTACTGGGGATTCAAAAACACCATCAAAACCGCTGAAGGTAAGGATCTAGGTTACTTTTTTGTCTTGTTAGCTTTATTTCTTCGTAGTGACAGCTTATTCATGATATCAATACACGCTTAAGTAATTAACAAACACAGCGCTCCAAATGGGGAAGCAACATGTTGAGCTTATATATGTGTAGTTCCTCACATGATGTGCGTCTTTTGACATGGCTTGCGTAGCCTTCCAAATTTTTAAATGTGGGTGGTCGAAAAATGTAAAATTCCATTGGAATCTGACAAGGTTCTAAAGCCTTGTAGACTTTCTCATTAGTTTTTCAAAGCAATCAATTAACCATCTTTTAGACAGTGTTACCTTAAATGCATTTTCAAGTCTCTGTGATTTGATGTTTTAAGAATATAAATCTGATCATCTCTCTGTGACAGCATTGAGACGGGAACGTGTAGCTTTTTTAATATGTAATCTTAAGTAGGTTACTGCACTTTTGTCGTCCAATTAGTTATATATAACAACCTTTGTGACCACAGGGAACTCAAAAGTTGATTTCTCGTCGATGGTGCCTCACATGTTTATGTTCATCTGTGACGTTGATGAAGAGTTATGGAGGCACGGTGACTGAAGCTATTGCAAATACCATGGATGGAAAACCTGCGTGCCGAAATTGTGGAGGAAGTGGTGCTGTACTTTGTAAGCATGTCTTCTTCTTTTTTATTATTTGTTAGAAATAACAGCTTTTGGTCGTTAGATATAATTTTTATTCTTCTTTCATGAAAGGCCTGTGATTTAAAAGTAATGAGCTTCTCCATGGACTTATAAAATTTAGAAGTCAAGGAAATAAAGCATATATACCGAACTTGAAAAGAAATATTTTGGTAAAGATAAAGTTATTTGTGTATTCTTTTGTAAAAAAAGTTCTTCAAGTTCTCTTTCAAACACGTTGTAAAAAAAAACTTACATCATTTTGGCATCCTTTTCATTGTTCATGTATTCGGACAAAAAAATCATCAAATACTTCCTCATATGAGCTTATCTTTGGAGTTAAAATACTTCTTTCCTTTTCTTTTCTTATCTTCCTCGCTTTGAGTTTTTCCTCTCTAAAGATGTATAGAAGTTTGATGAGACATACATTTTTTTTTATCTATCTATGCTCCCTATTTTCCATGGGATGCTTACTTTTCTTTGTTTTAGGTGACATGTGCGGTGGTACAGGGAAATGGAAAGCTCTAAATAGAAAACGGGCTAAAGATGTCTACGAGTTTACAGAATGTCCAAATTGTTATGGTAACTATTCATCTTGCTTACAAATTATGGTGACCTCATTAATGAATGTTTCATAAATCTGCATGGTTTCAGTTTGATACAACTTCACGTCTGTTTAAAAGCATTGTCCTGTCCTCTTGTAATGCTGTAGCCTTGAGACATAGAAAATCGATTTCTCTCTCTCTCTCTCTCTCTTTAATGTCCAGAAATATAGACCATGGCGAATGGTCAATGTTTTGATTCACCATGTTCTCTCATATGATCAAGTCGTGGTTAGATATTAAAACTAAAACATTCCTTGGGTGTCAATATGCTGTTAAACCCACTGTGAAATCTGAAGCAAGAATCTTGGTTTCTTTGTTGCATTCATCACTTGTCTTTGTTACCGACCGACAATTTCTGTATTGACCAACTACAACTGGCAACTAGAGAAAATTCTTGATTCATATGGATTTGAAATGTATCACATTTAAACTTCCAATATCTGTGCTCATCTCTTACCCTCTACTAACTTTCAAAATTTATTGTGACAGGTAGAGGAAAACTTGTATGCCCTGTTTGTCTAGGGACTGGTTTACCAAACAACAAAGGTCTCCTAAGAAGGCCCGACGCACGACAATTGCTTGATAAGATGTACAACGGTCGCTTATTACCAAATTCCTGAACTTCATCTCTCCTTGCAAAATTGGCTCCATGCCCATAGATGGTAATAGATGTATAACTTGTTTCTAGTTGGTAGAAGTTACCTAATTGCGGCTTTTGTCATGGTTGCTTCATGACGGAGTTCAGTGAGTGGAAAAACATAGCTATGGAGTTAGACGGCAATCTTGTTTACAGCCTCTAGTCGTCAAATGCATATTGTTTATACCAAAGAGAAAGCATAATCAGATCAATTTCAACCTATATTATAAATATGAAAGTCTGGTTATTGCAAATGAATAGAAAAAATCGAAAGACTAAGAACTAATCTTGATGGATGTTAATCAGACATGGGCAACCTGATTAC

mRNA sequence

ATGGCTTCTTCTTCTCATCTATCCGCCATTCCCCTCCGCCGTCCCTCTTCCTCCTCTCCACCTTCCTTATCCCACTCTAACTTAAAGCCTGTTGTGCTTCATGTGACATCGAATTCTGATGATGAAAGCTGCAGTACTGGGGATTCAAAAACACCATCAAAACCGCTGAAGGGAACTCAAAAGTTGATTTCTCGTCGATGGTGCCTCACATGTTTATGTTCATCTGTGACGTTGATGAAGAGTTATGGAGGCACGGTGACTGAAGCTATTGCAAATACCATGGATGGAAAACCTGCGTGCCGAAATTGTGGAGGAAGTGGTGCTGTACTTTGTGACATGTGCGGTGGTACAGGGAAATGGAAAGCTCTAAATAGAAAACGGGCTAAAGATGTCTACGAGTTTACAGAATGTCCAAATTGTTATGGTAGAGGAAAACTTGTATGCCCTGTTTGTCTAGGGACTGGTTTACCAAACAACAAAGGTCTCCTAAGAAGGCCCGACGCACGACAATTGCTTGATAAGATGTACAACGGTCGCTTATTACCAAATTCCTGA

Coding sequence (CDS)

ATGGCTTCTTCTTCTCATCTATCCGCCATTCCCCTCCGCCGTCCCTCTTCCTCCTCTCCACCTTCCTTATCCCACTCTAACTTAAAGCCTGTTGTGCTTCATGTGACATCGAATTCTGATGATGAAAGCTGCAGTACTGGGGATTCAAAAACACCATCAAAACCGCTGAAGGGAACTCAAAAGTTGATTTCTCGTCGATGGTGCCTCACATGTTTATGTTCATCTGTGACGTTGATGAAGAGTTATGGAGGCACGGTGACTGAAGCTATTGCAAATACCATGGATGGAAAACCTGCGTGCCGAAATTGTGGAGGAAGTGGTGCTGTACTTTGTGACATGTGCGGTGGTACAGGGAAATGGAAAGCTCTAAATAGAAAACGGGCTAAAGATGTCTACGAGTTTACAGAATGTCCAAATTGTTATGGTAGAGGAAAACTTGTATGCCCTGTTTGTCTAGGGACTGGTTTACCAAACAACAAAGGTCTCCTAAGAAGGCCCGACGCACGACAATTGCTTGATAAGATGTACAACGGTCGCTTATTACCAAATTCCTGA

Protein sequence

MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQKLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRLLPNS*

Homology

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BLAST of CsaV3_4G023550 vs. NCBI nr
Match: XP_011653566.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X2 [Cucumis sativus] >KAE8649480.1 hypothetical protein Csa_018113 [Cucumis sativus])

HSP 1 Score: 382.1 bits (980), Expect = 2.7e-102
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ 60
           MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ
Sbjct: 1   MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ 60

Query: 61  KLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
           KLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW
Sbjct: 61  KLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL
Sbjct: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 180

Query: 181 LPNS 185
           LPNS
Sbjct: 181 LPNS 184

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BLAST of CsaV3_4G023550 vs. NCBI nr
Match: XP_004142153.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 6.7e-101
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MASSSHLSAIPLRRPSSSSPPSLSHS-NLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGT 60
           MASSSHLSAIPLRRPSSSSPPSLSHS NLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGT
Sbjct: 1   MASSSHLSAIPLRRPSSSSPPSLSHSANLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGT 60

Query: 61  QKLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK 120
           QKLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK
Sbjct: 61  QKLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK 120

Query: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGR 180
           WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGR
Sbjct: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGR 180

Query: 181 LLPNS 185
           LLPNS
Sbjct: 181 LLPNS 185

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BLAST of CsaV3_4G023550 vs. NCBI nr
Match: XP_016900745.1 (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 361.7 bits (927), Expect = 3.8e-96
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ 60
           MASSSHLSAIPLRRPSSSS PSLSHSN KPVVLH+TSNSDDESCSTGDS+TPSKPLKGTQ
Sbjct: 2   MASSSHLSAIPLRRPSSSSTPSLSHSNSKPVVLHLTSNSDDESCSTGDSRTPSKPLKGTQ 61

Query: 61  KLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
            LISRRWCLTCLCSSVTLMK+YGGT TEAIANTMDGKP CRNCGGSGAVLCDMCGGTGKW
Sbjct: 62  NLISRRWCLTCLCSSVTLMKNYGGT-TEAIANTMDGKPVCRNCGGSGAVLCDMCGGTGKW 121

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL
Sbjct: 122 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 181

Query: 181 LPN 184
           LPN
Sbjct: 182 LPN 183

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BLAST of CsaV3_4G023550 vs. NCBI nr
Match: XP_038901741.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 342.0 bits (876), Expect = 3.1e-90
Identity = 167/184 (90.76%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ 60
           MASSSHLSAIPL RPSS+S PSL H N KPVVLHVTS SD ESCSTG S  PSKPLKGTQ
Sbjct: 2   MASSSHLSAIPL-RPSSASTPSLYHPNSKPVVLHVTSKSDGESCSTGVSNPPSKPLKGTQ 61

Query: 61  KLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
            LISRRWCLTCLCSSVTL+K+YGGT TEAIANTMDGKP CRNCGGSGAVLCDMCGGTGKW
Sbjct: 62  NLISRRWCLTCLCSSVTLLKNYGGTGTEAIANTMDGKPVCRNCGGSGAVLCDMCGGTGKW 121

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKMYNGRL
Sbjct: 122 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181

Query: 181 LPNS 185
           LPNS
Sbjct: 182 LPNS 184

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BLAST of CsaV3_4G023550 vs. NCBI nr
Match: XP_022958131.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata] >XP_023532563.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6605877.1 Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035828.1 Protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 338.2 bits (866), Expect = 4.5e-89
Identity = 166/184 (90.22%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ 60
           MASSSHLSAIPL R SSSS PSLSHSN KPVVL VTSN DDES +TGDS TPSKPLKGT+
Sbjct: 2   MASSSHLSAIPL-RSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTR 61

Query: 61  KLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
            LISRRWCLTCLCSS TL+K YGGT+ EAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW
Sbjct: 62  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 121

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKM+NGRL
Sbjct: 122 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 181

Query: 181 LPNS 185
           LPNS
Sbjct: 182 LPNS 184

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BLAST of CsaV3_4G023550 vs. ExPASy Swiss-Prot
Match: O64750 (Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSA2 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.9e-54
Identity = 115/189 (60.85%), Postives = 136/189 (71.96%), Query Frame = 0


Query: 2   ASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSK---PLKG 61
           ASSSHL A+P     S + P LS  N   V +   S  +++S  + DS + S+     +G
Sbjct: 3   ASSSHLFALP-----SPASPFLSAPNRNRVRVLAKSCPENQSFDSNDSDSSSETTHKAQG 62

Query: 62  TQKLISRR-WCLTCLCSSVTLMKSYGGTVTEAIANTMDGKP--ACRNCGGSGAVLCDMCG 121
            QK +SRR W   C+C+S  L+ +    V+   A  +D KP  +CRNC GSGAVLCDMCG
Sbjct: 63  DQKSVSRRQWMTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGAVLCDMCG 122

Query: 122 GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKM 181
           GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRP AR+LL+KM
Sbjct: 123 GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPGARELLEKM 182

Query: 182 YNGRLLPNS 185
           YNGRLLP+S
Sbjct: 183 YNGRLLPDS 186

[Close]

BLAST of CsaV3_4G023550 vs. ExPASy Swiss-Prot
Match: Q6YUA8 (Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSA2 PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-53
Identity = 110/176 (62.50%), Postives = 131/176 (74.43%), Query Frame = 0


Query: 12  LRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQKLISRRWCLTC 71
           +RRP+++  P+ + S++     H     D E+CST    T  K  + T    SRR CL C
Sbjct: 19  IRRPAAAHRPAKARSHISCCSRH----DDAEACSTSKPLTNGKEEEKTTP--SRRKCLAC 78

Query: 72  LCSSVTLMKSYGGTV--TEAIANTMDGKPA-CRNCGGSGAVLCDMCGGTGKWKALNRKRA 131
           LC +VTL+ + G T+     +A+ M  KPA CRNC GSGAVLCDMCGGTGKWKALNRKRA
Sbjct: 79  LC-AVTLISASGPTMLTPNGLASDMMSKPAVCRNCNGSGAVLCDMCGGTGKWKALNRKRA 138

Query: 132 KDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRLLPNS 185
           KDVY FTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDA++LLDKMYNG++LP+S
Sbjct: 139 KDVYLFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAKKLLDKMYNGKILPDS 187

[Close]

BLAST of CsaV3_4G023550 vs. ExPASy Swiss-Prot
Match: A0A1D6KL43 (Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Zea mays OX=4577 GN=PSA2 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.1e-49
Identity = 97/162 (59.88%), Postives = 116/162 (71.60%), Query Frame = 0


Query: 26  SNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQKLISRRWCLTCLCSSVTLMKSYG-- 85
           S ++  V  +  + D + C+       ++  + T    SRR CL CL  +VTL+ + G  
Sbjct: 38  SKVQSQVRCLARDEDSKGCANVSKAETNEEKETTPS--SRRRCLVCL-GAVTLISATGPP 97

Query: 86  -GTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYG 145
            G   +A+      K  CRNC GSGAV+CDMCGGTGKWKALNRKRAKDVYEFTECPNCYG
Sbjct: 98  NGLAADAMNKAGVQKAVCRNCNGSGAVICDMCGGTGKWKALNRKRAKDVYEFTECPNCYG 157

Query: 146 RGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRLLPNS 185
           RGKLVCPVCLGTGLPNNKGLLRRP+A+QLLDKMYNG++LP S
Sbjct: 158 RGKLVCPVCLGTGLPNNKGLLRRPEAKQLLDKMYNGKILPRS 196

[Close]

BLAST of CsaV3_4G023550 vs. ExPASy Swiss-Prot
Match: B5YAR4 (Chaperone protein DnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) OX=309799 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.6e-07
Identity = 28/92 (30.43%), Postives = 46/92 (50.00%), Query Frame = 0


Query: 75  SVTLMKSYGGTVTEAIANTMDGKPACRNCG---GSGAVLCDMCGGTGKWKALNRKRAKDV 134
           ++TL ++  G+  E     ++  P C+  G   G+  V CDMC GTG+ + + +      
Sbjct: 137 NITLEEAAFGSEKEIYVTRLETCPTCKGKGTEPGTNPVKCDMCNGTGQIRNMRQTPFGQF 196

Query: 135 YEFTECPNCYGRGKLV---CPVCLGTGLPNNK 161
            + T CP C+G G+++   C  C GTG    K
Sbjct: 197 VQITTCPKCHGTGQIIINPCHECHGTGKVRRK 228

[Close]

BLAST of CsaV3_4G023550 vs. ExPASy Swiss-Prot
Match: Q7UA76 (Chaperone protein DnaJ OS=Synechococcus sp. (strain WH8102) OX=84588 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 26/74 (35.14%), Postives = 34/74 (45.95%), Query Frame = 0


Query: 100 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 159
           C  CGGSGA        C  CGG G+ +   R       +  ECPNC G G+++   C  
Sbjct: 146 CDTCGGSGAKAGSGPTTCGTCGGAGQVRRATRTPFGSFTQVAECPNCGGTGQVIADPCNA 205

Query: 160 CLGTGLPNNKGLLR 165
           C G G+   +  LR
Sbjct: 206 CGGQGVRQVRKKLR 219

[Close]

BLAST of CsaV3_4G023550 vs. ExPASy TrEMBL
Match: A0A0A0KX46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G285690 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.2e-101
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MASSSHLSAIPLRRPSSSSPPSLSHS-NLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGT 60
           MASSSHLSAIPLRRPSSSSPPSLSHS NLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGT
Sbjct: 1   MASSSHLSAIPLRRPSSSSPPSLSHSANLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGT 60

Query: 61  QKLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK 120
           QKLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK
Sbjct: 61  QKLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGK 120

Query: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGR 180
           WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGR
Sbjct: 121 WKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGR 180

Query: 181 LLPNS 185
           LLPNS
Sbjct: 181 LLPNS 185

[Close]

BLAST of CsaV3_4G023550 vs. ExPASy TrEMBL
Match: A0A1S4DYE8 (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491567 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.8e-96
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ 60
           MASSSHLSAIPLRRPSSSS PSLSHSN KPVVLH+TSNSDDESCSTGDS+TPSKPLKGTQ
Sbjct: 2   MASSSHLSAIPLRRPSSSSTPSLSHSNSKPVVLHLTSNSDDESCSTGDSRTPSKPLKGTQ 61

Query: 61  KLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
            LISRRWCLTCLCSSVTLMK+YGGT TEAIANTMDGKP CRNCGGSGAVLCDMCGGTGKW
Sbjct: 62  NLISRRWCLTCLCSSVTLMKNYGGT-TEAIANTMDGKPVCRNCGGSGAVLCDMCGGTGKW 121

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL
Sbjct: 122 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 181

Query: 181 LPN 184
           LPN
Sbjct: 182 LPN 183

[Close]

BLAST of CsaV3_4G023550 vs. ExPASy TrEMBL
Match: A0A6J1H182 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459453 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.2e-89
Identity = 166/184 (90.22%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ 60
           MASSSHLSAIPL R SSSS PSLSHSN KPVVL VTSN DDES +TGDS TPSKPLKGT+
Sbjct: 2   MASSSHLSAIPL-RSSSSSRPSLSHSNSKPVVLQVTSNLDDESSTTGDSSTPSKPLKGTR 61

Query: 61  KLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
            LISRRWCLTCLCSS TL+K YGGT+ EAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW
Sbjct: 62  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 121

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKM+NGRL
Sbjct: 122 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 181

Query: 181 LPNS 185
           LPNS
Sbjct: 182 LPNS 184

[Close]

BLAST of CsaV3_4G023550 vs. ExPASy TrEMBL
Match: A0A6J1KA92 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491517 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.8e-89
Identity = 166/184 (90.22%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 1   MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ 60
           MASSSHLSAIPL R SSSS P LSHSN KPVVL VTSN DDESCSTGD  TPSKPLKGT 
Sbjct: 2   MASSSHLSAIPL-RSSSSSRPFLSHSNSKPVVLQVTSNLDDESCSTGDLSTPSKPLKGTP 61

Query: 61  KLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
            LISRRWCLTCLCSS TL+K YGGT+ EAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW
Sbjct: 62  ILISRRWCLTCLCSSPTLIKDYGGTMAEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 121

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKM+NGRL
Sbjct: 122 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMFNGRL 181

Query: 181 LPNS 185
           LPNS
Sbjct: 182 LPNS 184

[Close]

BLAST of CsaV3_4G023550 vs. ExPASy TrEMBL
Match: A0A6J1DK36 (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021269 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.3e-85
Identity = 157/184 (85.33%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 1   MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ 60
           MASSSHLSAIPLR  S+S+  +LSH+  KP+VL+ TSN D+ESCS+GDS TPSKPLKGTQ
Sbjct: 2   MASSSHLSAIPLRLSSTSTRTNLSHAKSKPIVLNGTSNLDNESCSSGDSNTPSKPLKGTQ 61

Query: 61  KLISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKW 120
            LISRRWCLTCLCSS+TL+K +GGT T A ANTMDGKP CRNCGGSGAVLCDMCGGTGKW
Sbjct: 62  FLISRRWCLTCLCSSMTLIKDFGGT-TGASANTMDGKPVCRNCGGSGAVLCDMCGGTGKW 121

Query: 121 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRL 180
           KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKMYNGRL
Sbjct: 122 KALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181

Query: 181 LPNS 185
           LPNS
Sbjct: 182 LPNS 184

[Close]

BLAST of CsaV3_4G023550 vs. TAIR 10
Match: AT2G34860.1 (DnaJ/Hsp40 cysteine-rich domain superfamily protein )

HSP 1 Score: 213.0 bits (541), Expect = 2.0e-55
Identity = 115/189 (60.85%), Postives = 136/189 (71.96%), Query Frame = 0


Query: 2   ASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSK---PLKG 61
           ASSSHL A+P     S + P LS  N   V +   S  +++S  + DS + S+     +G
Sbjct: 3   ASSSHLFALP-----SPASPFLSAPNRNRVRVLAKSCPENQSFDSNDSDSSSETTHKAQG 62

Query: 62  TQKLISRR-WCLTCLCSSVTLMKSYGGTVTEAIANTMDGKP--ACRNCGGSGAVLCDMCG 121
            QK +SRR W   C+C+S  L+ +    V+   A  +D KP  +CRNC GSGAVLCDMCG
Sbjct: 63  DQKSVSRRQWMTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGAVLCDMCG 122

Query: 122 GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKM 181
           GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRP AR+LL+KM
Sbjct: 123 GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPGARELLEKM 182

Query: 182 YNGRLLPNS 185
           YNGRLLP+S
Sbjct: 183 YNGRLLPDS 186

[Close]

BLAST of CsaV3_4G023550 vs. TAIR 10
Match: AT2G34860.2 (DnaJ/Hsp40 cysteine-rich domain superfamily protein )

HSP 1 Score: 213.0 bits (541), Expect = 2.0e-55
Identity = 115/189 (60.85%), Postives = 136/189 (71.96%), Query Frame = 0


Query: 2   ASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSK---PLKG 61
           ASSSHL A+P     S + P LS  N   V +   S  +++S  + DS + S+     +G
Sbjct: 3   ASSSHLFALP-----SPASPFLSAPNRNRVRVLAKSCPENQSFDSNDSDSSSETTHKAQG 62

Query: 62  TQKLISRR-WCLTCLCSSVTLMKSYGGTVTEAIANTMDGKP--ACRNCGGSGAVLCDMCG 121
            QK +SRR W   C+C+S  L+ +    V+   A  +D KP  +CRNC GSGAVLCDMCG
Sbjct: 63  DQKSVSRRQWMTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGAVLCDMCG 122

Query: 122 GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKM 181
           GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRP AR+LL+KM
Sbjct: 123 GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPGARELLEKM 182

Query: 182 YNGRLLPNS 185
           YNGRLLP+S
Sbjct: 183 YNGRLLPDS 186

[Close]

BLAST of CsaV3_4G023550 vs. TAIR 10
Match: AT5G06130.1 (chaperone protein dnaJ-related )

HSP 1 Score: 45.1 bits (105), Expect = 7.3e-05
Identity = 24/67 (35.82%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 97  KPACRNCGGSGAVLCDMCGGTGKWKALN---RKRAKD----VYEFTECPNCYGRGKLVCP 156
           K  C+ C G+G + C  C  +G   +++   R RA +    V     C NC G GK++CP
Sbjct: 151 KKRCKYCLGTGYLPCARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMCP 210

[Close]

BLAST of CsaV3_4G023550 vs. TAIR 10
Match: AT5G06130.2 (chaperone protein dnaJ-related )

HSP 1 Score: 45.1 bits (105), Expect = 7.3e-05
Identity = 24/67 (35.82%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 97  KPACRNCGGSGAVLCDMCGGTGKWKALN---RKRAKD----VYEFTECPNCYGRGKLVCP 156
           K  C+ C G+G + C  C  +G   +++   R RA +    V     C NC G GK++CP
Sbjct: 235 KKRCKYCLGTGYLPCARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMCP 294

[Close]

BLAST of CsaV3_4G023550 vs. TAIR 10
Match: AT5G03870.1 (Glutaredoxin family protein )

HSP 1 Score: 42.4 bits (98), Expect = 4.8e-04
Identity = 20/68 (29.41%), Postives = 31/68 (45.59%), Query Frame = 0


Query: 84  GTVTEAIANTMDGKPACRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGR 143
           G + E I     G   CR CGG   ++C +C G+ K +   +K         +C  C   
Sbjct: 322 GILLEGIPAARLGGSCCRGCGGMRFMMCVVCNGSCKVREEEKK------SMVKCLKCNEN 381

Query: 144 GKLVCPVC 152
           G ++CP+C
Sbjct: 382 GLVLCPIC 383

The following BLAST results are available for this feature:

BLAST of CsaV3_4G023550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653566.1	2.7e-102	100.00	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X2 [Cucumis sativus] >KA...	[more]
XP_004142153.1	6.7e-101	99.46	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Cucumis sativus]	[more]
XP_016900745.1	3.8e-96	95.63	PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X1 [Cu...	[more]
XP_038901741.1	3.1e-90	90.76	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Benincasa hispida]	[more]
XP_022958131.1	4.5e-89	90.22	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata] >XP_0235325...	[more]

BLAST of CsaV3_4G023550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64750	2.9e-54	60.85	Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q6YUA8	1.4e-53	62.50	Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Oryza sativa subsp. japonica ...	[more]
A0A1D6KL43	8.1e-49	59.88	Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Zea mays OX=4577 GN=PSA2 PE=2...	[more]
B5YAR4	7.6e-07	30.43	Chaperone protein DnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 396...	[more]
Q7UA76	1.2e-04	35.14	Chaperone protein DnaJ OS=Synechococcus sp. (strain WH8102) OX=84588 GN=dnaJ PE=...	[more]

BLAST of CsaV3_4G023550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX46	3.2e-101	99.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G285690 PE=4 SV=1	[more]
A0A1S4DYE8	1.8e-96	95.63	protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X1 OS=Cucumis mel...	[more]
A0A6J1H182	2.2e-89	90.22	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KA92	2.8e-89	90.22	protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DK36	4.3e-85	85.33	protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Momordica charantia OX...	[more]

BLAST of CsaV3_4G023550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34860.1	2.0e-55	60.85	DnaJ/Hsp40 cysteine-rich domain superfamily protein	[more]
AT2G34860.2	2.0e-55	60.85	DnaJ/Hsp40 cysteine-rich domain superfamily protein	[more]
AT5G06130.1	7.3e-05	35.82	chaperone protein dnaJ-related	[more]
AT5G06130.2	7.3e-05	35.82	chaperone protein dnaJ-related	[more]
AT5G03870.1	4.8e-04	29.41	Glutaredoxin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.10.230.10		coord: 98..158 e-value: 4.9E-5 score: 25.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	PANTHER	PTHR15852:SF56	PROTEIN PHOTOSYSTEM I ASSEMBLY 2, CHLOROPLASTIC	coord: 21..183
None	No IPR available	PANTHER	PTHR15852	PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN	coord: 21..183
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 99..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G023550.1	CsaV3_4G023550.1	mRNA