CsaV3_4G023520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G023520
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionMitochondrial distribution and morphology protein 34
Locationchr4: 13704806 .. 13705148 (+)
RNA-Seq ExpressionCsaV3_4G023520
SyntenyCsaV3_4G023520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCTTCAGAGCTTTCGTCTCCATCGAATACTGTGGAATGCAAGGAAAGACCCCAAAAGCCCCCCTTCAGGCCTGCTAAAGATGACACCAAGCTTCTTCTCCAAGATCCGGTTCTCTCTCTCTCTCTTTCTCCCAAATTAACTCTTACTACTAATTCTTTCCTTTTCATTCTTGAATTTGGTTGTACCAATGTGCACCAACTGAAGATTGTTCTCTATTTCTTTCTTTTGTTTGTAGATACGGAGGTCAGATCCAATTGAGACTGAGGAAGCCGTGCTCCGACCACCTCCTTTCCATTTCTCTCTCCCCAAATCTAAGAACCCTTCTCAAATGGGGTGA

mRNA sequence

ATGAAAGCTTCAGAGCTTTCGTCTCCATCGAATACTGTGGAATGCAAGGAAAGACCCCAAAAGCCCCCCTTCAGGCCTGCTAAAGATGACACCAAGCTTCTTCTCCAAGATCCGATACGGAGGTCAGATCCAATTGAGACTGAGGAAGCCGTGCTCCGACCACCTCCTTTCCATTTCTCTCTCCCCAAATCTAAGAACCCTTCTCAAATGGGGTGA

Coding sequence (CDS)

ATGAAAGCTTCAGAGCTTTCGTCTCCATCGAATACTGTGGAATGCAAGGAAAGACCCCAAAAGCCCCCCTTCAGGCCTGCTAAAGATGACACCAAGCTTCTTCTCCAAGATCCGATACGGAGGTCAGATCCAATTGAGACTGAGGAAGCCGTGCTCCGACCACCTCCTTTCCATTTCTCTCTCCCCAAATCTAAGAACCCTTCTCAAATGGGGTGA

Protein sequence

MKASELSSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFSLPKSKNPSQMG*
Homology
BLAST of CsaV3_4G023520 vs. NCBI nr
Match: KGN54090.1 (hypothetical protein Csa_017904 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MKASELSSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFS 60
          MKASELSSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFS
Sbjct: 1  MKASELSSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFS 60

Query: 61 LPKSKNPSQMG 72
          LPKSKNPSQMG
Sbjct: 61 LPKSKNPSQMG 71

BLAST of CsaV3_4G023520 vs. NCBI nr
Match: KAG7035826.1 (hypothetical protein SDJN02_02625 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-23
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MKASELSSPSN---TVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPF 60
          M+ASELS+P+N   TVECK+RP+KPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPF
Sbjct: 1  MRASELSTPTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60

Query: 61 HFSLPKSKNPSQMG 72
           FS+ +SKN S+MG
Sbjct: 61 QFSVSESKNSSKMG 74

BLAST of CsaV3_4G023520 vs. NCBI nr
Match: KAG6605875.1 (hypothetical protein SDJN03_03192, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 1  MKASELSSPSN---TVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPF 60
          M+ASELS+P+N   TVECK+RP KPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPF
Sbjct: 1  MRASELSTPTNPTTTVECKDRPHKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60

Query: 61 HFSLPKSKNPSQMG 72
           FS+ +SKN S+MG
Sbjct: 61 QFSVSESKNSSKMG 74

BLAST of CsaV3_4G023520 vs. NCBI nr
Match: XP_022995760.1 (uncharacterized protein LOC111491196 [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 3.1e-22
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0

Query: 1  MKASELS---SPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPF 60
          M+ SELS   +P+N  ECK+RP KPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPF
Sbjct: 11 MRTSELSTPTNPTNAAECKDRPLKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 70

Query: 61 HFSLPKSKNPSQMG 72
           FS+ KSKN S+MG
Sbjct: 71 QFSVSKSKNSSKMG 84

BLAST of CsaV3_4G023520 vs. NCBI nr
Match: XP_028783480.1 (uncharacterized protein LOC114739565 isoform X1 [Prosopis alba])

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 0

Query: 9  PSNTVECKERP---QKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFSLPKSK 68
          P++ +   E+P   QKPPFRPAKDDTK +LQDPI RSDPIETEEAVLR PP  FS+P S 
Sbjct: 10 PNSNMRISEKPRQNQKPPFRPAKDDTKPVLQDPILRSDPIETEEAVLRLPP--FSIPGST 69

Query: 69 NPSQM 71
           PS+M
Sbjct: 70 TPSKM 72

BLAST of CsaV3_4G023520 vs. ExPASy TrEMBL
Match: A0A0A0KWV8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280670 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.1e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MKASELSSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFS 60
          MKASELSSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFS
Sbjct: 1  MKASELSSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFS 60

Query: 61 LPKSKNPSQMG 72
          LPKSKNPSQMG
Sbjct: 61 LPKSKNPSQMG 71

BLAST of CsaV3_4G023520 vs. ExPASy TrEMBL
Match: A0A6J1K4U9 (uncharacterized protein LOC111491196 OS=Cucurbita maxima OX=3661 GN=LOC111491196 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0

Query: 1  MKASELS---SPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPF 60
          M+ SELS   +P+N  ECK+RP KPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPF
Sbjct: 11 MRTSELSTPTNPTNAAECKDRPLKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 70

Query: 61 HFSLPKSKNPSQMG 72
           FS+ KSKN S+MG
Sbjct: 71 QFSVSKSKNSSKMG 84

BLAST of CsaV3_4G023520 vs. ExPASy TrEMBL
Match: W9QLE6 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013727 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1  MKASELS-SPSNTV-ECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFH 60
          MKASE S  PSN   + +E+P KP FRPAKDDTK +LQDPI RSDPIETEEAVLR PPF 
Sbjct: 1  MKASESSVKPSNNYPQNREKPTKPSFRPAKDDTKPILQDPILRSDPIETEEAVLRLPPFP 60

Query: 61 FSLPKSKNP 68
          F+  ++ NP
Sbjct: 61 FA--RTTNP 67

BLAST of CsaV3_4G023520 vs. ExPASy TrEMBL
Match: A0A1D1XLA5 (Mitochondrial distribution and morphology protein 34 (Fragment) OS=Anthurium amnicola OX=1678845 GN=mdm34_2 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.0e-11
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 10  SNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFSLPKSKNPSQ 69
           S+T     + QKPPFRPAKDDTK LL+DPI RSDPIETE+AVLR PPF+ S P S   SQ
Sbjct: 43  SSTAASGGKQQKPPFRPAKDDTKPLLRDPILRSDPIETEQAVLRLPPFYPSPPNSDEMSQ 102

Query: 70  M 71
           +
Sbjct: 103 L 103

BLAST of CsaV3_4G023520 vs. ExPASy TrEMBL
Match: A0A1U7ZV42 (uncharacterized protein LOC104597593 OS=Nelumbo nucifera OX=4432 GN=LOC104597593 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.8e-11
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  MKASEL-----SSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPP 58
          MK SE+      S   T    ++PQKPPFRPAKDDTK +LQDPI RSDPIETEEAVLR P
Sbjct: 1  MKGSEILIKTSESEGETKSFSDKPQKPPFRPAKDDTKPILQDPILRSDPIETEEAVLRLP 60

BLAST of CsaV3_4G023520 vs. TAIR 10
Match: AT2G20480.1 (unknown protein; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-10
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 18 RPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFSLP 63
          + QKPPFRPA DDTK +LQDPI RSDP+ETEEAVLR P F    P
Sbjct: 16 KTQKPPFRPAVDDTKPVLQDPILRSDPMETEEAVLRLPSFPMIRP 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54090.11.7e-31100.00hypothetical protein Csa_017904 [Cucumis sativus][more]
KAG7035826.11.3e-2379.73hypothetical protein SDJN02_02625 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6605875.11.7e-2379.73hypothetical protein SDJN03_03192, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022995760.13.1e-2277.03uncharacterized protein LOC111491196 [Cucurbita maxima][more]
XP_028783480.12.5e-1166.15uncharacterized protein LOC114739565 isoform X1 [Prosopis alba][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWV88.1e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280670 PE=4 SV=1[more]
A0A6J1K4U91.5e-2277.03uncharacterized protein LOC111491196 OS=Cucurbita maxima OX=3661 GN=LOC111491196... [more]
W9QLE61.6e-1166.67Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013727 PE=4 SV=1[more]
A0A1D1XLA56.0e-1165.57Mitochondrial distribution and morphology protein 34 (Fragment) OS=Anthurium amn... [more]
A0A1U7ZV427.8e-1166.13uncharacterized protein LOC104597593 OS=Nelumbo nucifera OX=4432 GN=LOC104597593... [more]
Match NameE-valueIdentityDescription
AT2G20480.11.0e-1071.11unknown protein; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR37207:SF1OS09G0446000 PROTEINcoord: 11..67
NoneNo IPR availablePANTHERPTHR37207OS09G0446000 PROTEINcoord: 11..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G023520.1CsaV3_4G023520.1mRNA