CsaV3_4G022130 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G022130
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description60S ribosomal protein L39
Locationchr4: 13252703 .. 13253729 (+)
RNA-Seq ExpressionCsaV3_4G022130
SyntenyCsaV3_4G022130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTCTCATAAGACTTTTAGAATGAAGAAGAAGCTCGCAAAGAAGAAGAGGCATAATAGGCCGAACCCGCACTGGATCCGCCTGAGAATTGACAACACGATCGATCCGTTACTAGTGTCGCACAAAGCTAGGGTTCTAAGGTGCTTTCGATTCTTACCTTCAATTGTCATTTACCTTGATTTTGTTAAGTTTCATAAACTTGAATTTTCTTAACGATCTACATTTGTATTTCCGCAACTACTGAAATTTAGTTTATGGGATACTTTTGTTTAATTATTGCTACACTCAAGATTGAAGCACTTTGGAATAGAGTGAATTTACCATAAAAAATACTAATAGATGACTTTTATTTCAAAAGATAAGATATGATCTTTAAAATTTTAACATTTCTAGTCCATTTGAAAAACATAGGTTCTCGAAAGTGCAAATGAATTCTGGAAAAATTCACGAACAAATTGTAGAGATATGTTGTAAGGGGTACATTTGGAAGATTTAGGATATTTTACAAGTACATGGCTGTGGAATACAAGATCAGACTATTGCAAACTATTATTCTTATTGAGGAAATAGAAAGAAGGTGAGAAATTCATCGCTCTAAATTAGAAAGTACATTTGGAGGATTTAGGATATTTTACAAGTAGATGGCTGTGGAATGCATGATCATATTATTGCATATTATTATTCTTACAGAGGAAATAGAAAGAGCATCAAAAATTCATCGCACCATATTAAGTGGGATCATATACTTAAACCCACATGCCTTATCACCGATTGTTTTTCCTGGTATCTGGCTTTAAACTTTAGTTTCTTAGATGCTAGAGCTTCCAGGTTAATTCACGGATCAGTACTCTACTGATTCCTATGTCAAAGTCCTGATGAAAATTGAGTGTGCTGACTTCTTGAAACATTGCAATTTTGTGACACTAAAAACTTGTTAGTTGTTATAGTTAAAACATATAAGGTATATATTGACTACTGTATCAAAGTGTTCACACTTTGTTTCAGTAAATATAATCTTTTATGA

mRNA sequence

ATGCTGTCTCATAAGACTTTTAGAATGAAGAAGAAGCTCGCAAAGAAGAAGAGGCATAATAGGCCGAACCCGCACTGGATCCGCCTGAGAATTGACAACACGATCGATCCGTTACTAGTGTCGCACAAAGCTAGGGTTCTAAGAGGAAATAGAAAGAGCATCAAAAATTCATCGCACCATATTAAGTGGGATCATATACTTAAACCCACATGCCTTATCACCGATTGTTTTTCCTGGTATCTGGCTTTAAACTTTAGTTTCTTAGATGCTAGAGCTTCCAGTAAATATAATCTTTTATGA

Coding sequence (CDS)

ATGCTGTCTCATAAGACTTTTAGAATGAAGAAGAAGCTCGCAAAGAAGAAGAGGCATAATAGGCCGAACCCGCACTGGATCCGCCTGAGAATTGACAACACGATCGATCCGTTACTAGTGTCGCACAAAGCTAGGGTTCTAAGAGGAAATAGAAAGAGCATCAAAAATTCATCGCACCATATTAAGTGGGATCATATACTTAAACCCACATGCCTTATCACCGATTGTTTTTCCTGGTATCTGGCTTTAAACTTTAGTTTCTTAGATGCTAGAGCTTCCAGTAAATATAATCTTTTATGA

Protein sequence

MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHHIKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL*
Homology
[Close]
BLAST of CsaV3_4G022130 vs. NCBI nr
Match: KAE8649466.1 (hypothetical protein Csa_018885 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 3.8e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHH 60
           MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHH
Sbjct: 1   MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHH 60

Query: 61  IKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL 100
           IKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL
Sbjct: 61  IKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL 99

[Close]
BLAST of CsaV3_4G022130 vs. NCBI nr
Match: XP_011657167.1 (60S ribosomal protein L39-like [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 6.1e-08
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID 37
          MLSHKTFRMKKKL KKKR NRP PHWIRLR DNTID
Sbjct: 1  MLSHKTFRMKKKLLKKKRQNRPTPHWIRLRTDNTID 36

[Close]
BLAST of CsaV3_4G022130 vs. NCBI nr
Match: XP_011657256.1 (60S ribosomal protein L39-like [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 8.9e-07
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID 37
          MLSHKTFRMKKKLAKKKR NRP  +WIRLR DNTID
Sbjct: 1  MLSHKTFRMKKKLAKKKRQNRPTSNWIRLRTDNTID 36

[Close]
BLAST of CsaV3_4G022130 vs. NCBI nr
Match: XP_011656152.1 (60S ribosomal protein L39-1-like [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNT 35
          MLSHKTF MKKK AKKKR NRP PHWIRLRIDNT
Sbjct: 1  MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT 34

[Close]
BLAST of CsaV3_4G022130 vs. NCBI nr
Match: KAE8653071.1 (hypothetical protein Csa_020114 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 1   MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNT 35
           MLSHKTF MKKK AKKKR NRP PHWIRLRIDNT
Sbjct: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT 276

[Close]
BLAST of CsaV3_4G022130 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]
BLAST of CsaV3_4G022130 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]
BLAST of CsaV3_4G022130 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]
BLAST of CsaV3_4G022130 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-07
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTF++KKKLAKK R NRP P+WIR+R DNTI
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTI 35

[Close]
BLAST of CsaV3_4G022130 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-07
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHK+F +KKKL KK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTI 35

[Close]
BLAST of CsaV3_4G022130 vs. ExPASy TrEMBL
Match: A0A1L6K4G8 (Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.2e-06
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLV 41
          M SHKTFR+KKKLAKK R NRP PHWIR+R DNTI  L V
Sbjct: 40 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTISFLKV 79

[Close]
BLAST of CsaV3_4G022130 vs. ExPASy TrEMBL
Match: A0A6A4MLJ7 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_01460 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.2e-06
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 3  SHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI------DPLLVSHKARVLR 49
          SHKTF +KKKLAKK R NRP PHWIR+R DNTI         L  H+ARVL+
Sbjct: 11 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRWVQCQAQALAPHQARVLK 62

[Close]
BLAST of CsaV3_4G022130 vs. ExPASy TrEMBL
Match: A0A6J1HZ80 (60S ribosomal protein L39 OS=Cucurbita maxima OX=3661 GN=LOC111467947 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.1e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 35

[Close]
BLAST of CsaV3_4G022130 vs. ExPASy TrEMBL
Match: A0A0A0LYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568530 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.1e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 35

[Close]
BLAST of CsaV3_4G022130 vs. ExPASy TrEMBL
Match: A0A1S3BCZ7 (60S ribosomal protein L39 OS=Cucumis melo OX=3656 GN=LOC103488337 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.1e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 35

[Close]
BLAST of CsaV3_4G022130 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 54.3 bits (129), Expect = 6.5e-08
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHK+F +KKKL KK R NRP PHWIRLR DNTI
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTI 35

[Close]
BLAST of CsaV3_4G022130 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 1  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          M SHK+F +KKKL KK R NRP P+WIRLR DN I
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKI 35

[Close]
BLAST of CsaV3_4G022130 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-05
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0 

Query: 9  MKKKLAKKKRHNRPNPHWIRLRIDNTI 36
          +KKKL KK R NRP PHWIRLR DNTI
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTI 28

The following BLAST results are available for this feature:
BLAST of CsaV3_4G022130 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649466.13.8e-50100.00hypothetical protein Csa_018885 [Cucumis sativus][more]
XP_011657167.16.1e-0888.8960S ribosomal protein L39-like [Cucumis sativus][more]
XP_011657256.18.9e-0786.1160S ribosomal protein L39-like [Cucumis sativus][more]
XP_011656152.11.5e-0688.2460S ribosomal protein L39-1-like [Cucumis sativus][more]
KAE8653071.11.5e-0688.24hypothetical protein Csa_020114 [Cucumis sativus][more]
BLAST of CsaV3_4G022130 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6KAJ81.9e-0777.1460S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P... [more]
P514261.9e-0777.1460S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P... [more]
P514251.9e-0777.1460S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1[more]
Q5SMI45.4e-0774.2960S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P... [more]
P514249.2e-0774.2960S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2[more]
BLAST of CsaV3_4G022130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1L6K4G86.2e-0675.00Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1[more]
A0A6A4MLJ76.2e-0661.54Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
A0A6J1HZ808.1e-0682.8660S ribosomal protein L39 OS=Cucurbita maxima OX=3661 GN=LOC111467947 PE=3 SV=1[more]
A0A0A0LYE18.1e-0682.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568530 PE=3 SV=1[more]
A0A1S3BCZ78.1e-0682.8660S ribosomal protein L39 OS=Cucumis melo OX=3656 GN=LOC103488337 PE=3 SV=1[more]
BLAST of CsaV3_4G022130 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31985.16.5e-0874.29Ribosomal protein L39 family protein [more]
AT3G02190.12.1e-0668.57Ribosomal protein L39 family protein [more]
AT2G25210.13.0e-0577.78Ribosomal protein L39 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10Ribosomal protein L39ecoord: 1..60
e-value: 1.8E-12
score: 49.2
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 3..35
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 9..35
e-value: 2.9E-6
score: 26.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR19970:SF31SUBFAMILY NOT NAMEDcoord: 1..35
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G022130.1CsaV3_4G022130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome