CsaV3_4G022090 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G022090
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 13199820 .. 13201198 (+)
RNA-Seq Expression	CsaV3_4G022090
Synteny	CsaV3_4G022090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAGAATTAGGCCCTCGAGCATCCTTGCTTTCCTTTTCCTCCTTCTTTTCATCGCAAGTGGGAAGGTAGGTGGAAGGGAGCCAGAAGTTTTCTTCTCAAATCATCCCCACCCCCAAACCCAACCCTTTCGGTCTCGATTCAATTAAGGACTTTTGTGTAGAGAGGGAAGTATCCACTCGTATGCGTCAAAAGTCAAGAAGTAGAGTTCAGCAAAAGCCTAGGCAAAGGCTCGAAGTTCAAGGGCAGCAGTTCTGGTAGCTCTTTTAGTTCTTGTCGTTGAATCAAGCTATTTATGATTGACGAATAATGTAGATTTAGAAAGACATTGACCTAAATCCCCGTAACTGAAAGAACGGGAGGCGGAAAGGGAAGTTGAGGAAGGTGAAAAGAATATTGACGTTGACTCGGGCTAGGAAACATCCGTTAGTCTTATTGACACATCCAGAGTAATCTTTCTCCACTGCAAAGGTGTTACGACGCCGAACCGACTCGACAAGGAAGACTGAAAGCGCTATCCCACGAACCATAGGATGAAGCCCACGTAGCGGCAGTATCCTTTCGTAAGAAGGAGAAGGCGCATACTACAATCAGGACAAAGTCGACAAGAGAAGAGGCATGCATCGGCAGCAAGAAAGTCAGAGGACTCAATCTCAAAAGAGACATAAGTCAATGAATTTAAATGGTAATGACTTCAACTTTGTAGGAAAGTTGGGTCGTTATAATTTACTAGCTTCAATTATAAATTTTCTAATTAATTGTTGCTGCTTGAATCTCCTCAATTGAGTTCACTTCCTTTTGAAAGTGAGAATTCAATGCTGCCAGGTCGCAAGGGATGCAGAGGAATGTCAGAGATTCGAATTCAAAATCCTGGTCCGAATCTTGGGCCTGGGGTGTTACAGTTGCCTCTTTGGTGTTCGAGATCAAGCCCTTTGCCATGTTGGCTCAAGTTGTCTCTTGAATGTGGTGCTCGATCTCAACGTACTGTCTCATGTGTGCGCCGGTTGTCAACAATAGTCATAAGGTCATTTTTGGTAATCTCTCATCTTCTATGTCTAGAGATACTTGTTAAGACCCTTTAAGTTTCTATTTAATTTTCCCCTACCTTTAAGCTTTGAGGCACAAACATGAACATAGATAAGATTAGATCTGGTAATTTGTTCATTTATGAAAAACTAAGAAACGCACCATATCGACACAAGTTGTCTCGTTAATTTGATATGGACACATGTAAAGATACTAAATGTAATTCAAAAAACCAAAAGTAACAAATTAATAGCACAAAGAGACTTAATTTAATCTGGAGTAATTGAGGAGGTTAAGTTTATAGAAAGAATTGATAATTAACCTTGAAGGAGATACACATACAGGGACAAGGA

mRNA sequence

ATGCATCGGCAGCAAGAAAGTCAGAGGACTCAATCTCAAAAGAGACATAAGTCAATGAATTTAAATGGTCGCAAGGGATGCAGAGGAATGTCAGAGATTCGAATTCAAAATCCTGGTCCGAATCTTGGGCCTGGGGTGTTACAGTTGCCTCTTTGGTGTTCGAGATCAAGCCCTTTGCCATGTTGGCTCAAGTTGTCTCTTGAATGTGGTGCTCGATCTCAACGTACTGTCTCATGTGTGCGCCGGTTGTCAACAATAGTCATAAGGTCATTTTTGGTAATCTCTCATCTTCTATGTCTAGAGATACTTGTTAAGACCCTTTAA

Coding sequence (CDS)

ATGCATCGGCAGCAAGAAAGTCAGAGGACTCAATCTCAAAAGAGACATAAGTCAATGAATTTAAATGGTCGCAAGGGATGCAGAGGAATGTCAGAGATTCGAATTCAAAATCCTGGTCCGAATCTTGGGCCTGGGGTGTTACAGTTGCCTCTTTGGTGTTCGAGATCAAGCCCTTTGCCATGTTGGCTCAAGTTGTCTCTTGAATGTGGTGCTCGATCTCAACGTACTGTCTCATGTGTGCGCCGGTTGTCAACAATAGTCATAAGGTCATTTTTGGTAATCTCTCATCTTCTATGTCTAGAGATACTTGTTAAGACCCTTTAA

Protein sequence

MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLPCWLKLSLECGARSQRTVSCVRRLSTIVIRSFLVISHLLCLEILVKTL*

Homology

[Close]

BLAST of CsaV3_4G022090 vs. NCBI nr
Match: KAE8649464.1 (hypothetical protein Csa_018897 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 2.4e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP 60
           MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP
Sbjct: 1   MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP 60

Query: 61  CWLKLSLECGARSQRTVSCVRRLSTIVIRSFLVISHLLCLEILVKTL 108
           CWLKLSLECGARSQRTVSCVRRLSTIVIRSFLVISHLLCLEILVKTL
Sbjct: 61  CWLKLSLECGARSQRTVSCVRRLSTIVIRSFLVISHLLCLEILVKTL 107

[Close]

BLAST of CsaV3_4G022090 vs. NCBI nr
Match: XP_031740188.1 (uncharacterized protein LOC116403367 isoform X1 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 2.0e-44
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP 60
          MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP
Sbjct: 1  MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP 60

Query: 61 CWLKLSLECGARSQRTVSCVRRLSTIVIRSFLVISHL 98
          CWLKLSLECGARSQRTVSCVRRLSTIVIRSFLV  HL
Sbjct: 61 CWLKLSLECGARSQRTVSCVRRLSTIVIRSFLVSKHL 97

[Close]

BLAST of CsaV3_4G022090 vs. NCBI nr
Match: XP_031740190.1 (uncharacterized protein LOC116403367 isoform X3 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 2.8e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP 60
          MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP
Sbjct: 1  MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP 60

Query: 61 CWLKLSLECGARSQRTVSCVRRLSTIVIRSFLV 94
          CWLKLSLECGARSQRTVSCVRRLSTIVIRSFLV
Sbjct: 61 CWLKLSLECGARSQRTVSCVRRLSTIVIRSFLV 93

[Close]

BLAST of CsaV3_4G022090 vs. NCBI nr
Match: XP_031740189.1 (uncharacterized protein LOC116403367 isoform X2 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 2.0e-41
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP 60
          MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP
Sbjct: 1  MHRQQESQRTQSQKRHKSMNLNGRKGCRGMSEIRIQNPGPNLGPGVLQLPLWCSRSSPLP 60

Query: 61 CWLKLSLECGARSQRTVSCVRRLSTIVIR 90
          CWLKLSLECGARSQRTVSCVRRLSTIVIR
Sbjct: 61 CWLKLSLECGARSQRTVSCVRRLSTIVIR 89

The following BLAST results are available for this feature:

BLAST of CsaV3_4G022090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649464.1	2.4e-50	100.00	hypothetical protein Csa_018897 [Cucumis sativus]	[more]
XP_031740188.1	2.0e-44	97.94	uncharacterized protein LOC116403367 isoform X1 [Cucumis sativus]	[more]
XP_031740190.1	2.8e-43	100.00	uncharacterized protein LOC116403367 isoform X3 [Cucumis sativus]	[more]
XP_031740189.1	2.0e-41	100.00	uncharacterized protein LOC116403367 isoform X2 [Cucumis sativus]	[more]

BLAST of CsaV3_4G022090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G022090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G022090 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G022090.1	CsaV3_4G022090.1	mRNA