CsaV3_4G021880 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G021880
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 12958230 .. 12958490 (-)
RNA-Seq Expression	CsaV3_4G021880
Synteny	CsaV3_4G021880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAAACGATGAAGTCTACCTCCATTGATGCAGCTGCAGTGAAGAAAAGAGCGTTAATAAGTCTTCAACGCGTGCATGATATGGCGGCATTCGATCGTAGGTCGACGGCGACGGCGACGATGTGTAAAGATGACCTAATTATCACGAAGAAGGATTGGTCCGATTTGGGTGGGGATGAACCGATCCATGGGAACCAATCTCAAGATCGTGTGGAAGAAGGGCCTCAGGCTGCATCTACGAAATGGATTGGGCCTTAA

mRNA sequence

ATGAGCAAAACGATGAAGTCTACCTCCATTGATGCAGCTGCAGTGAAGAAAAGAGCGTTAATAAGTCTTCAACGCGTGCATGATATGGCGGCATTCGATCGTAGGTCGACGGCGACGGCGACGATGTGTAAAGATGACCTAATTATCACGAAGAAGGATTGGTCCGATTTGGGTGGGGATGAACCGATCCATGGGAACCAATCTCAAGATCGTGTGGAAGAAGGGCCTCAGGCTGCATCTACGAAATGGATTGGGCCTTAA

Coding sequence (CDS)

ATGAGCAAAACGATGAAGTCTACCTCCATTGATGCAGCTGCAGTGAAGAAAAGAGCGTTAATAAGTCTTCAACGCGTGCATGATATGGCGGCATTCGATCGTAGGTCGACGGCGACGGCGACGATGTGTAAAGATGACCTAATTATCACGAAGAAGGATTGGTCCGATTTGGGTGGGGATGAACCGATCCATGGGAACCAATCTCAAGATCGTGTGGAAGAAGGGCCTCAGGCTGCATCTACGAAATGGATTGGGCCTTAA

Protein sequence

MSKTMKSTSIDAAAVKKRALISLQRVHDMAAFDRRSTATATMCKDDLIITKKDWSDLGGDEPIHGNQSQDRVEEGPQAASTKWIGP*

Homology

[Close]

BLAST of CsaV3_4G021880 vs. NCBI nr
Match: KAE8649449.1 (hypothetical protein Csa_018874 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 1.5e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MSKTMKSTSIDAAAVKKRALISLQRVHDMAAFDRRSTATATMCKDDLIITKKDWSDLGGD 60
          MSKTMKSTSIDAAAVKKRALISLQRVHDMAAFDRRSTATATMCKDDLIITKKDWSDLGGD
Sbjct: 1  MSKTMKSTSIDAAAVKKRALISLQRVHDMAAFDRRSTATATMCKDDLIITKKDWSDLGGD 60

Query: 61 EPIHGNQSQDRVEEGPQAASTKWIGP 87
          EPIHGNQSQDRVEEGPQAASTKWIGP
Sbjct: 61 EPIHGNQSQDRVEEGPQAASTKWIGP 86

[Close]

BLAST of CsaV3_4G021880 vs. NCBI nr
Match: KGN47243.1 (hypothetical protein Csa_016994 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-22
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 5  MKSTSIDAAAVKKRALISLQRVHDMAAFDRRSTATATMCKDDLIITKKDWSDLGGDEPIH 64
          MKSTSIDAA VKKRALISLQRV+D+A  DRRST TAT  KDDLIITKK+  DLGGDEP H
Sbjct: 1  MKSTSIDAATVKKRALISLQRVYDIATIDRRSTTTATTGKDDLIITKKNRFDLGGDEPAH 60

Query: 65 G-----NQSQDRVEEGPQAASTKWIGP 87
          G     NQS DRVE+ PQ+AS K IGP
Sbjct: 61 GDQLNENQSHDRVEKEPQSASMKGIGP 87

[Close]

BLAST of CsaV3_4G021880 vs. NCBI nr
Match: KGN47244.1 (hypothetical protein Csa_017038 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 9.4e-05
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 44 KDDLIITKKDWSDLGGDEPIH-----GNQSQDRVEEGPQAASTKWIG 86
          KDDL  TKKD SDLGGDEP H     GN++ DRVE+GP AAS   IG
Sbjct: 13 KDDLKFTKKDRSDLGGDEPAHGNRLNGNRAHDRVEKGPSAASVIGIG 59

[Close]

BLAST of CsaV3_4G021880 vs. ExPASy TrEMBL
Match: A0A0A0LAX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G497910 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.4e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MSKTMKSTSIDAAAVKKRALISLQRVHDMAAFDRRSTATATMCKDDLIITKKDWSDLGGD 60
          MSKTMKSTSIDAAAVKKRALISLQRVHDMAAFDRRSTATATMCKDDLIITKKDWSDLGGD
Sbjct: 1  MSKTMKSTSIDAAAVKKRALISLQRVHDMAAFDRRSTATATMCKDDLIITKKDWSDLGGD 60

Query: 61 EPIHGNQSQDRVEEGPQAASTKWIGP 87
          EPIHGNQSQDRVEEGPQAASTKWIGP
Sbjct: 61 EPIHGNQSQDRVEEGPQAASTKWIGP 86

[Close]

BLAST of CsaV3_4G021880 vs. ExPASy TrEMBL
Match: A0A0A0KCG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G229540 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 5  MKSTSIDAAAVKKRALISLQRVHDMAAFDRRSTATATMCKDDLIITKKDWSDLGGDEPIH 64
          MKSTSIDAA VKKRALISLQRV+D+A  DRRST TAT  KDDLIITKK+  DLGGDEP H
Sbjct: 1  MKSTSIDAATVKKRALISLQRVYDIATIDRRSTTTATTGKDDLIITKKNRFDLGGDEPAH 60

Query: 65 G-----NQSQDRVEEGPQAASTKWIGP 87
          G     NQS DRVE+ PQ+AS K IGP
Sbjct: 61 GDQLNENQSHDRVEKEPQSASMKGIGP 87

[Close]

BLAST of CsaV3_4G021880 vs. ExPASy TrEMBL
Match: A0A0A0KEI2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G230040 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.6e-05
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 44 KDDLIITKKDWSDLGGDEPIH-----GNQSQDRVEEGPQAASTKWIG 86
          KDDL  TKKD SDLGGDEP H     GN++ DRVE+GP AAS   IG
Sbjct: 13 KDDLKFTKKDRSDLGGDEPAHGNRLNGNRAHDRVEKGPSAASVIGIG 59

The following BLAST results are available for this feature:

BLAST of CsaV3_4G021880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649449.1	1.5e-39	100.00	hypothetical protein Csa_018874 [Cucumis sativus]	[more]
KGN47243.1	2.2e-22	73.56	hypothetical protein Csa_016994 [Cucumis sativus]	[more]
KGN47244.1	9.4e-05	63.83	hypothetical protein Csa_017038 [Cucumis sativus]	[more]

BLAST of CsaV3_4G021880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G021880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAX5	7.4e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G497910 PE=4 SV=1	[more]
A0A0A0KCG8	1.1e-22	73.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G229540 PE=4 SV=1	[more]
A0A0A0KEI2	4.6e-05	63.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G230040 PE=4 SV=1	[more]

BLAST of CsaV3_4G021880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G021880.1	CsaV3_4G021880.1	mRNA