CsaV3_4G019780 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G019780
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 12373998 .. 12374465 (-)
RNA-Seq ExpressionCsaV3_4G019780
SyntenyCsaV3_4G019780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTACAATAAAGATGGATGTCGGACCCACGACTGGAAAACGAGGAGTTGCGCAATAGATGAGGACTTCACGATGCACAACTGTTGGATGCTACACGGCTCGTATCTGAACGACAAGCGTCGGCAAAACAATTGGGACGGGGCTACCGGTGGGGACCCGGCGTTGCAAATCTGGGCAACGGCGCGGAGAGACACGGCGGTTACAGGTTCACGCGGCGGCCTTGGCTTCGACGGAGACAGAGATGGCAGCCGACGATTGCAGCGGCGGTTTTGGATCGAAGAAGAAAAAGAAAGAGTGGCGGTTGGGTTCGGCTTTGGTGAACGGAGAAAGGAACAGACGAACCTGGTGGACGGCTCGATCTGTCGGAGGTGCGATGGCGTGGCAGCTGTAACTGGTGAACGGGGAAGAAGAACGTGCGGTTGGAGGCTAGGGCAGGGTGAAGGAGAAAATAGAAAAAGAAAATGA

mRNA sequence

ATGCACTACAATAAAGATGGATGTCGGACCCACGACTGGAAAACGAGGAGTTGCGCAATAGATGAGGACTTCACGATGCACAACTGTTGGATGCTACACGGCTCGTATCTGAACGACAAGCGTCGGCAAAACAATTGGGACGGGGCTACCGGTGGGGACCCGGCGTTGCAAATCTGGGCAACGGCGCGGAGAGACACGGCGGTTACAGGTTCACGCGGCGGCCTTGGCTTCGACGGAGACAGAGATGGCAGCCGACGATTGCAGCGGCGGTTTTGGATCGAAGAAGAAAAAGAAAGAGTGGCGGTTGGGTTCGGCTTTGGTGAACGGAGAAAGGAACAGACGAACCTGGTGGACGGCTCGATCTGTCGGAGGTGCGATGGCGTGGCAGCTGTAACTGGTGAACGGGGAAGAAGAACGTGCGGTTGGAGGCTAGGGCAGGGTGAAGGAGAAAATAGAAAAAGAAAATGA

Coding sequence (CDS)

ATGCACTACAATAAAGATGGATGTCGGACCCACGACTGGAAAACGAGGAGTTGCGCAATAGATGAGGACTTCACGATGCACAACTGTTGGATGCTACACGGCTCGTATCTGAACGACAAGCGTCGGCAAAACAATTGGGACGGGGCTACCGGTGGGGACCCGGCGTTGCAAATCTGGGCAACGGCGCGGAGAGACACGGCGGTTACAGGTTCACGCGGCGGCCTTGGCTTCGACGGAGACAGAGATGGCAGCCGACGATTGCAGCGGCGGTTTTGGATCGAAGAAGAAAAAGAAAGAGTGGCGGTTGGGTTCGGCTTTGGTGAACGGAGAAAGGAACAGACGAACCTGGTGGACGGCTCGATCTGTCGGAGGTGCGATGGCGTGGCAGCTGTAACTGGTGAACGGGGAAGAAGAACGTGCGGTTGGAGGCTAGGGCAGGGTGAAGGAGAAAATAGAAAAAGAAAATGA

Protein sequence

MHYNKDGCRTHDWKTRSCAIDEDFTMHNCWMLHGSYLNDKRRQNNWDGATGGDPALQIWATARRDTAVTGSRGGLGFDGDRDGSRRLQRRFWIEEEKERVAVGFGFGERRKEQTNLVDGSICRRCDGVAAVTGERGRRTCGWRLGQGEGENRKRK*
Homology
[Close]
BLAST of CsaV3_4G019780 vs. NCBI nr
Match: KAE8649438.1 (hypothetical protein Csa_004770 [Cucumis sativus])

HSP 1 Score: 336.3 bits (861), Expect = 1.4e-88
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MHYNKDGCRTHDWKTRSCAIDEDFTMHNCWMLHGSYLNDKRRQNNWDGATGGDPALQIWA 60
           MHYNKDGCRTHDWKTRSCAIDEDFTMHNCWMLHGSYLNDKRRQNNWDGATGGDPALQIWA
Sbjct: 1   MHYNKDGCRTHDWKTRSCAIDEDFTMHNCWMLHGSYLNDKRRQNNWDGATGGDPALQIWA 60

Query: 61  TARRDTAVTGSRGGLGFDGDRDGSRRLQRRFWIEEEKERVAVGFGFGERRKEQTNLVDGS 120
           TARRDTAVTGSRGGLGFDGDRDGSRRLQRRFWIEEEKERVAVGFGFGERRKEQTNLVDGS
Sbjct: 61  TARRDTAVTGSRGGLGFDGDRDGSRRLQRRFWIEEEKERVAVGFGFGERRKEQTNLVDGS 120

Query: 121 ICRRCDGVAAVTGERGRRTCGWRLGQGEGENRKRK 156
           ICRRCDGVAAVTGERGRRTCGWRLGQGEGENRKRK
Sbjct: 121 ICRRCDGVAAVTGERGRRTCGWRLGQGEGENRKRK 155

[Close]
BLAST of CsaV3_4G019780 vs. NCBI nr
Match: KAE8637193.1 (hypothetical protein CSA_017720, partial [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 2.4e-59
Identity = 111/115 (96.52%), Postives = 112/115 (97.39%), Query Frame = 0 

Query: 26  MHNCWMLHGSYLNDKRRQNNWDGATGGDPALQIWATARRDTAVTGSRGGLGFDGDRDGSR 85
           MHNCWMLHGSYLNDK RQNNWDGATGGDPALQIW TARRDTAVTGSRGGLGFDGDRDG R
Sbjct: 1   MHNCWMLHGSYLNDKCRQNNWDGATGGDPALQIWTTARRDTAVTGSRGGLGFDGDRDGGR 60

Query: 86  RLQRRFWIEEEKERVAVGFGFGERRKEQTNLVDGSICRRCDGVAAVTGERGRRTC 141
           +LQRRFWIEEEKERVAVGFGFGERRKEQTNLVDGSICRRCDGVAAVTGERGRRTC
Sbjct: 61  QLQRRFWIEEEKERVAVGFGFGERRKEQTNLVDGSICRRCDGVAAVTGERGRRTC 115

[Close]
BLAST of CsaV3_4G019780 vs. NCBI nr
Match: KAE8649439.1 (hypothetical protein Csa_004769, partial [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-34
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 1  MHYNKDGCRTHDWKTRSCAIDEDFTMHNCWMLHGSYLNDKRRQNNWDGATGGDPALQIWA 60
          MHYNKDGCRT DWKTRSCAIDEDFTMHNCWMLHGSYLNDKRRQNNWDGATGGDPALQIW 
Sbjct: 1  MHYNKDGCRTRDWKTRSCAIDEDFTMHNCWMLHGSYLNDKRRQNNWDGATGGDPALQIWT 60

Query: 61 TARRDTAVT 70
          TARRDT VT
Sbjct: 61 TARRDTVVT 69

[Close]
BLAST of CsaV3_4G019780 vs. NCBI nr
Match: KAE8637549.1 (hypothetical protein CSA_015439, partial [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-32
Identity = 64/69 (92.75%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 1  MHYNKDGCRTHDWKTRSCAIDEDFTMHNCWMLHGSYLNDKRRQNNWDGATGGDPALQIWA 60
          MHYNKDGC T DWKTRSCAIDEDFTMHNCWMLHGSYLNDKRRQNNWDGATGGDP LQIW 
Sbjct: 1  MHYNKDGCLTRDWKTRSCAIDEDFTMHNCWMLHGSYLNDKRRQNNWDGATGGDPTLQIWT 60

Query: 61 TARRDTAVT 70
           ARRDTAVT
Sbjct: 61 MARRDTAVT 69

[Close]
BLAST of CsaV3_4G019780 vs. NCBI nr
Match: KAE8637341.1 (hypothetical protein CSA_000012 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 5.6e-08
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 26 MHNCWMLHGSYLNDKRRQNNWDGATGGDPAL 57
          MHNCWMLHGSYLND+RRQN WDGATGGD AL
Sbjct: 1  MHNCWMLHGSYLNDERRQNYWDGATGGDTAL 31

The following BLAST results are available for this feature:
BLAST of CsaV3_4G019780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649438.11.4e-88100.00hypothetical protein Csa_004770 [Cucumis sativus][more]
KAE8637193.12.4e-5996.52hypothetical protein CSA_017720, partial [Cucumis sativus][more]
KAE8649439.13.5e-3495.65hypothetical protein Csa_004769, partial [Cucumis sativus][more]
KAE8637549.11.1e-3292.75hypothetical protein CSA_015439, partial [Cucumis sativus][more]
KAE8637341.15.6e-0890.32hypothetical protein CSA_000012 [Cucumis sativus][more]
BLAST of CsaV3_4G019780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G019780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G019780 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G019780.1CsaV3_4G019780.1mRNA