CsaV3_4G014850 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G014850
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 10345246 .. 10345593 (+)
RNA-Seq ExpressionCsaV3_4G014850
SyntenyCsaV3_4G014850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTGCGATTGCTTCGTGGTTGTTGGAAGGGTTTGGTCGAAATACCGAGCCTTTACGTCGGGTGGAGAGCGAGAGCGGGATGTCGAGTTGATGTGCTTGGATGGGCTTGCTTGGATGATGCTTGCATTTTGTTGTGGGCGTCGTTCGGGCTTGCTTTTTCTTGAGGATACAAGATGTCTTGTGATTACTTCTTGCTTGATGGAAGGGTTTGATCTGAATGTTGGTTTATCCCCCAACGTCAGGTGGGGAGTGAGAGCGGAAAGTCGAGTTGATGTGCTTGGATGGGCTTGCTTGGATGATGCTTGCACTTTGTTGTGGGCGTCGTTTGGGCTTGCTTGTTCTTGA

mRNA sequence

ATGACTTGCGATTGCTTCGTGGTTGTTGGAAGGGTTTGGTCGAAATACCGAGCCTTTACGTCGGGTGGAGAGCGAGAGCGGGATGTCGAGTTGATGTGCTTGGATGGGCTTGCTTGGATGATGCTTGCATTTTGTTGTGGGCGTCGTTCGGGCTTGCTTTTTCTTGAGGATACAAGATGTCTTGTGATTACTTCTTGCTTGATGGAAGGGTTTGATCTGAATGTTGGTTTATCCCCCAACGTCAGGTGGGGAGTGAGAGCGGAAAGTCGAGTTGATGTGCTTGGATGGGCTTGCTTGGATGATGCTTGCACTTTGTTGTGGGCGTCGTTTGGGCTTGCTTGTTCTTGA

Coding sequence (CDS)

ATGACTTGCGATTGCTTCGTGGTTGTTGGAAGGGTTTGGTCGAAATACCGAGCCTTTACGTCGGGTGGAGAGCGAGAGCGGGATGTCGAGTTGATGTGCTTGGATGGGCTTGCTTGGATGATGCTTGCATTTTGTTGTGGGCGTCGTTCGGGCTTGCTTTTTCTTGAGGATACAAGATGTCTTGTGATTACTTCTTGCTTGATGGAAGGGTTTGATCTGAATGTTGGTTTATCCCCCAACGTCAGGTGGGGAGTGAGAGCGGAAAGTCGAGTTGATGTGCTTGGATGGGCTTGCTTGGATGATGCTTGCACTTTGTTGTGGGCGTCGTTTGGGCTTGCTTGTTCTTGA

Protein sequence

MTCDCFVVVGRVWSKYRAFTSGGERERDVELMCLDGLAWMMLAFCCGRRSGLLFLEDTRCLVITSCLMEGFDLNVGLSPNVRWGVRAESRVDVLGWACLDDACTLLWASFGLACS*
Homology
BLAST of CsaV3_4G014850 vs. NCBI nr
Match: KAE8649391.1 (hypothetical protein Csa_011827 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 1.6e-63
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0

Query: 1   MTCDCFVVVGRVWSKYRAFTSGGERERDVELMCLDGLAWMMLAFCCGRRSGLLFLEDTRC 60
           MTCDCFVVVGRVWSKYRAFTSGGERERDVELMCLDGLAWMMLAFCCGRRSGLLFLEDTRC
Sbjct: 1   MTCDCFVVVGRVWSKYRAFTSGGERERDVELMCLDGLAWMMLAFCCGRRSGLLFLEDTRC 60

Query: 61  LVITSCLMEGFDLNVGLSPNVRWGVRAESRVDVLGWACLDDACTLLWASFGLACS 116
           LVITSCLMEGFDLNVGLSPNVRWGVRAESRVDVLGWACLDDACTLLWASFGLACS
Sbjct: 61  LVITSCLMEGFDLNVGLSPNVRWGVRAESRVDVLGWACLDDACTLLWASFGLACS 115

BLAST of CsaV3_4G014850 vs. NCBI nr
Match: WP_148654918.1 (hypothetical protein [Legionella pneumophila])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 75/89 (84.27%), Postives = 76/89 (85.39%), Query Frame = 0

Query: 27  RDVELMCLDGLAWMMLAFCCGRRSGLLFLEDTRCLVITSCLMEGFDLNVGLSPNVRWGVR 86
           RDVELMCLDGLAWMMLA CCGRR G L LEDTRCL I SCL+EGF  NVG SPNV WGVR
Sbjct: 2   RDVELMCLDGLAWMMLALCCGRRLGSLVLEDTRCLSIASCLVEGFGRNVGFSPNVGWGVR 61

Query: 87  AESRVDVLGWACLDDACTLLWASFGLACS 116
           A SRVDVLG ACLDDACTLLWA FGLACS
Sbjct: 62  AGSRVDVLGRACLDDACTLLWALFGLACS 90

BLAST of CsaV3_4G014850 vs. NCBI nr
Match: WP_148654917.1 (hypothetical protein [Legionella pneumophila])

HSP 1 Score: 134.4 bits (337), Expect = 6.2e-28
Identity = 62/75 (82.67%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 40  MMLAFCCGRRSGLLFLEDTRCLVITSCLMEGFDLNVGLSPNVRWGVRAESRVDVLGWACL 99
           MMLA CCG R GLL LEDTRCL I SCL+EGF  NVG SPNV WGVRA SRVDVLGW CL
Sbjct: 1   MMLALCCGCRLGLLVLEDTRCLSIASCLVEGFGRNVGFSPNVGWGVRAGSRVDVLGWGCL 60

Query: 100 DDACTLLWASFGLAC 115
           DDACTLLWASFGLAC
Sbjct: 61  DDACTLLWASFGLAC 75

BLAST of CsaV3_4G014850 vs. NCBI nr
Match: KGN64818.2 (hypothetical protein Csa_022817, partial [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-22
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 51  GLLFLEDTRCLVITSCLMEGFDLNVGLSPNVRWGVRAESRVDVLGWACLDDACTLLWASF 110
           GLL LE+TRCL I SCL++GF  NVG SP V WGVRA SRVDVLGWACLDDACTLLWASF
Sbjct: 1   GLLVLENTRCLSIASCLVDGFGQNVGFSPYVGWGVRAGSRVDVLGWACLDDACTLLWASF 60

Query: 111 GLACS 116
           GLACS
Sbjct: 61  GLACS 65

BLAST of CsaV3_4G014850 vs. NCBI nr
Match: KAE8637547.1 (hypothetical protein CSA_017403 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 5.1e-22
Identity = 68/111 (61.26%), Postives = 76/111 (68.47%), Query Frame = 0

Query: 1   MTCDCFVVVGRVWSKYRAFTSGGERERDVELMCLDGLAWMMLAFCCGRRSGLLFLEDTRC 60
           MTCDCFVVVGRVWS YRAFTSGG+R RDVELMCLDGLAWMMLA   GRR G L LEDTR 
Sbjct: 1   MTCDCFVVVGRVWSNYRAFTSGGQRVRDVELMCLDGLAWMMLAL-FGRRLGSLVLEDTR- 60

Query: 61  LVITSC---LMEGFDLN-VGLSPNVRWGVRAESRVDVLGWACLDD-ACTLL 107
               SC   L++G   +   LSPNV W    E  V+++   CLD  AC +L
Sbjct: 61  ---WSCDCFLLDGRAWSECRLSPNVGW--EREREVELI---CLDGLACMML 101

BLAST of CsaV3_4G014850 vs. ExPASy TrEMBL
Match: A0A5A7SJC7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00850 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.5e-11
Identity = 41/70 (58.57%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 1   MTCDCFVVVGRVW---SKYRAFTSGGERERDVELMCLDGLAWMMLAFCCGRRSGLLFLED 60
           M CDCF++ GRVW   +K RAFTS GE E DVELM  DGLAW+ML   CGR   +L   D
Sbjct: 44  MYCDCFLLGGRVWLELTKCRAFTSDGEAEWDVELMYSDGLAWIMLEPRCGRILSVLVCGD 103

Query: 61  TRCLVITSCL 68
           TR   I SCL
Sbjct: 104 TRDFAIASCL 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649391.11.6e-63100.00hypothetical protein Csa_011827 [Cucumis sativus][more]
WP_148654918.11.4e-3584.27hypothetical protein [Legionella pneumophila][more]
WP_148654917.16.2e-2882.67hypothetical protein [Legionella pneumophila][more]
KGN64818.23.9e-2281.54hypothetical protein Csa_022817, partial [Cucumis sativus][more]
KAE8637547.15.1e-2261.26hypothetical protein CSA_017403 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SJC71.5e-1158.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G014850.1CsaV3_4G014850.1mRNA