CsaV3_4G012220 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G012220
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionMINDY_DUB domain-containing protein
Locationchr4: 9529778 .. 9530765 (+)
RNA-Seq ExpressionCsaV3_4G012220
SyntenyCsaV3_4G012220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTTTCCTTCTGCAATTTCTCATTTCCTTCGAAGAAGAGAAAGCTGCTTCTCAGCCATTCCCTCGGAGTTCCCTTGGCAGTTGGCCACCCTCACAGGTTTGTTTGTCCTCCTCCTCCTCTCAGGTTCCACTATCTGCTTCTTTAAGCTTTTTTTTGCTTTTAGATTTTCTTCGTTGTTCTCCAACCAACATGCATGACCTTCAGGAACACATTTTCCAACCAACAAAACACTTCAGGAACACATTCATCTTTCTTGCCTTTTACTATCCTCTTTAAACGTTGTTATATCATGGTTCTTTCTTTTCACTATCCTCTTTATTTAGGTATGTTTGCCATATTATTAATACGAAGTTTGAGTTATTCTGTTAGATCTATTGCTTTAATCATTCTGTTTTTGTTAATTTGTTTGAGAATACTTTTGAAGTTCTATCCAGTTTGAAATGAATATATTTAAATCAGTACATATATTCATATTTGGTTGTTTATGTTGGGGCTGTACTTAAATTTGGGTCCAGGTGCAACGATTGAAGCATCACAGGGAAAGTTGTAATCTCTGGTTGCTGCATGGTTGATTGGTTTGAATAGTAATGTTGATGTAAATAGTCTTCTTAATTTTGTATGCTATATGAAAATTTTCTCCCACCCTGGTTTCACGAGTTCAGTTCTTTGATATTCACTTGTTGGTTTATAGGATAAAGATGCTGCCTTTGTTGAGAATCAACAGCATAACATTGATGATGTCATCGATCGGCTGCCACGTTTAGCAATAGGGATAAATGTAAATATTAAGTTTAGAAGGTAGTAGCTACTTAGTCCTTTTATCTTCGCCGGCCTTTTTTAAACTACGTTTAATGTTGTATTTGCAGAATTGATGATTTTAAATTCACTCCAGAATGTGCGATTTTTTATTTGCTGAACATTCGTCTATATCATGGTCGGATAGTTGACCCACAGGTTCTTATATACTTTCTTTCTTCTAATTATAA

mRNA sequence

CTTTTCCTTCTGCAATTTCTCATTTCCTTCGAAGAAGAGAAAGCTGCTTCTCAGCCATTCCCTCGGAGTTCCCTTGGCAGTTGGCCACCCTCACAGGATAAAGATGCTGCCTTTGTTGAGAATCAACAGCATAACATTGATGATGTCATCGATCGGCTGCCACGTTTAGCAATAGGGATAAATGTAAATATTAAGTTTAGAAGGTAG

Coding sequence (CDS)

CTTTTCCTTCTGCAATTTCTCATTTCCTTCGAAGAAGAGAAAGCTGCTTCTCAGCCATTCCCTCGGAGTTCCCTTGGCAGTTGGCCACCCTCACAGGATAAAGATGCTGCCTTTGTTGAGAATCAACAGCATAACATTGATGATGTCATCGATCGGCTGCCACGTTTAGCAATAGGGATAAATGTAAATATTAAGTTTAGAAGGTAG

Protein sequence

LFLLQFLISFEEEKAASQPFPRSSLGSWPPSQDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR*
Homology
BLAST of CsaV3_4G012220 vs. NCBI nr
Match: KAE8649372.1 (hypothetical protein Csa_019134, partial [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  LFLLQFLISFEEEKAASQPFPRSSLGSWPPSQDKDAAFVENQQHNIDDVIDRLPRLAIGI 60
          LFLLQFLISFEEEKAASQPFPRSSLGSWPPSQDKDAAFVENQQHNIDDVIDRLPRLAIGI
Sbjct: 1  LFLLQFLISFEEEKAASQPFPRSSLGSWPPSQDKDAAFVENQQHNIDDVIDRLPRLAIGI 60

Query: 61 NVNIKFRR 69
          NVNIKFRR
Sbjct: 61 NVNIKFRR 68

BLAST of CsaV3_4G012220 vs. NCBI nr
Match: GFP86497.1 (protein fam63a, partial [Phtheirospermum japonicum])

HSP 1 Score: 60.8 bits (146), Expect = 5.2e-06
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 32 QDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
          QDKDA FVENQQ NI D ID LPRL  GI+VNIKFRR
Sbjct: 3  QDKDAGFVENQQQNIADAIDLLPRLTTGIDVNIKFRR 39

BLAST of CsaV3_4G012220 vs. NCBI nr
Match: XP_021901894.1 (uncharacterized protein LOC110817594 isoform X1 [Carica papaya] >XP_021901895.1 uncharacterized protein LOC110817594 isoform X1 [Carica papaya])

HSP 1 Score: 60.1 bits (144), Expect = 8.8e-06
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 33  DKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +KDA +VENQQ NI D IDRLPRLA GI+VNIKFRR
Sbjct: 101 NKDAGYVENQQQNIADAIDRLPRLATGIDVNIKFRR 136

BLAST of CsaV3_4G012220 vs. NCBI nr
Match: XP_021901896.1 (uncharacterized protein LOC110817594 isoform X2 [Carica papaya])

HSP 1 Score: 60.1 bits (144), Expect = 8.8e-06
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 33  DKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +KDA +VENQQ NI D IDRLPRLA GI+VNIKFRR
Sbjct: 101 NKDAGYVENQQQNIADAIDRLPRLATGIDVNIKFRR 136

BLAST of CsaV3_4G012220 vs. NCBI nr
Match: CDP09830.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 32  QDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 96  KDKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 132

BLAST of CsaV3_4G012220 vs. ExPASy TrEMBL
Match: A0A068UMS2 (MINDY_DUB domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030303001 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 32  QDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 96  KDKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 132

BLAST of CsaV3_4G012220 vs. ExPASy TrEMBL
Match: A0A6P6U3X0 (ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X2 OS=Coffea arabica OX=13443 GN=LOC113707260 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 32  QDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 96  KDKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 132

BLAST of CsaV3_4G012220 vs. ExPASy TrEMBL
Match: A0A6P6U5L6 (ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X1 OS=Coffea arabica OX=13443 GN=LOC113707260 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 32  QDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 96  KDKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 132

BLAST of CsaV3_4G012220 vs. ExPASy TrEMBL
Match: A0A6P6TVL4 (ubiquitin carboxyl-terminal hydrolase MINDY-1-like OS=Coffea arabica OX=13443 GN=LOC113704214 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 32  QDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 96  KDKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 132

BLAST of CsaV3_4G012220 vs. ExPASy TrEMBL
Match: A0A6P6U466 (uncharacterized protein LOC113707260 isoform X3 OS=Coffea arabica OX=13443 GN=LOC113707260 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 32  QDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +DKDA +VENQQ NI D ID LPRLA GI+VNIKFRR
Sbjct: 96  KDKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRR 132

BLAST of CsaV3_4G012220 vs. TAIR 10
Match: AT4G11860.1 (Protein of unknown function (DUF544) )

HSP 1 Score: 53.5 bits (127), Expect = 7.7e-08
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 33  DKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR 69
           +KD  ++ENQQ NI D ID LPRL  GI+VNIKFRR
Sbjct: 107 NKDEGYIENQQQNIADAIDLLPRLTTGIDVNIKFRR 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649372.11.5e-29100.00hypothetical protein Csa_019134, partial [Cucumis sativus][more]
GFP86497.15.2e-0678.38protein fam63a, partial [Phtheirospermum japonicum][more]
XP_021901894.18.8e-0677.78uncharacterized protein LOC110817594 isoform X1 [Carica papaya] >XP_021901895.1 ... [more]
XP_021901896.18.8e-0677.78uncharacterized protein LOC110817594 isoform X2 [Carica papaya][more]
CDP09830.11.2e-0575.68unnamed protein product [Coffea canephora][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A068UMS25.6e-0675.68MINDY_DUB domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030... [more]
A0A6P6U3X05.6e-0675.68ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X2 OS=Coffea arabica ... [more]
A0A6P6U5L65.6e-0675.68ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X1 OS=Coffea arabica ... [more]
A0A6P6TVL45.6e-0675.68ubiquitin carboxyl-terminal hydrolase MINDY-1-like OS=Coffea arabica OX=13443 GN... [more]
A0A6P6U4665.6e-0675.68uncharacterized protein LOC113707260 isoform X3 OS=Coffea arabica OX=13443 GN=LO... [more]
Match NameE-valueIdentityDescription
AT4G11860.17.7e-0866.67Protein of unknown function (DUF544) [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033979MINDY deubiquitinase domainPFAMPF04424MINDY_DUBcoord: 34..67
e-value: 1.4E-4
score: 21.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G012220.1CsaV3_4G012220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:1990380 Lys48-specific deubiquitinase activity
molecular_function GO:0004843 thiol-dependent deubiquitinase