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CsaV3_4G012220 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GTCTTTTCCTTCTGCAATTTCTCATTTCCTTCGAAGAAGAGAAAGCTGCTTCTCAGCCATTCCCTCGGAGTTCCCTTGGCAGTTGGCCACCCTCACAGGTTTGTTTGTCCTCCTCCTCCTCTCAGGTTCCACTATCTGCTTCTTTAAGCTTTTTTTTGCTTTTAGATTTTCTTCGTTGTTCTCCAACCAACATGCATGACCTTCAGGAACACATTTTCCAACCAACAAAACACTTCAGGAACACATTCATCTTTCTTGCCTTTTACTATCCTCTTTAAACGTTGTTATATCATGGTTCTTTCTTTTCACTATCCTCTTTATTTAGGTATGTTTGCCATATTATTAATACGAAGTTTGAGTTATTCTGTTAGATCTATTGCTTTAATCATTCTGTTTTTGTTAATTTGTTTGAGAATACTTTTGAAGTTCTATCCAGTTTGAAATGAATATATTTAAATCAGTACATATATTCATATTTGGTTGTTTATGTTGGGGCTGTACTTAAATTTGGGTCCAGGTGCAACGATTGAAGCATCACAGGGAAAGTTGTAATCTCTGGTTGCTGCATGGTTGATTGGTTTGAATAGTAATGTTGATGTAAATAGTCTTCTTAATTTTGTATGCTATATGAAAATTTTCTCCCACCCTGGTTTCACGAGTTCAGTTCTTTGATATTCACTTGTTGGTTTATAGGATAAAGATGCTGCCTTTGTTGAGAATCAACAGCATAACATTGATGATGTCATCGATCGGCTGCCACGTTTAGCAATAGGGATAAATGTAAATATTAAGTTTAGAAGGTAGTAGCTACTTAGTCCTTTTATCTTCGCCGGCCTTTTTTAAACTACGTTTAATGTTGTATTTGCAGAATTGATGATTTTAAATTCACTCCAGAATGTGCGATTTTTTATTTGCTGAACATTCGTCTATATCATGGTCGGATAGTTGACCCACAGGTTCTTATATACTTTCTTTCTTCTAATTATAA CTTTTCCTTCTGCAATTTCTCATTTCCTTCGAAGAAGAGAAAGCTGCTTCTCAGCCATTCCCTCGGAGTTCCCTTGGCAGTTGGCCACCCTCACAGGATAAAGATGCTGCCTTTGTTGAGAATCAACAGCATAACATTGATGATGTCATCGATCGGCTGCCACGTTTAGCAATAGGGATAAATGTAAATATTAAGTTTAGAAGGTAG CTTTTCCTTCTGCAATTTCTCATTTCCTTCGAAGAAGAGAAAGCTGCTTCTCAGCCATTCCCTCGGAGTTCCCTTGGCAGTTGGCCACCCTCACAGGATAAAGATGCTGCCTTTGTTGAGAATCAACAGCATAACATTGATGATGTCATCGATCGGCTGCCACGTTTAGCAATAGGGATAAATGTAAATATTAAGTTTAGAAGGTAG LFLLQFLISFEEEKAASQPFPRSSLGSWPPSQDKDAAFVENQQHNIDDVIDRLPRLAIGINVNIKFRR* Homology
BLAST of CsaV3_4G012220 vs. NCBI nr
Match: KAE8649372.1 (hypothetical protein Csa_019134, partial [Cucumis sativus]) HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
BLAST of CsaV3_4G012220 vs. NCBI nr
Match: GFP86497.1 (protein fam63a, partial [Phtheirospermum japonicum]) HSP 1 Score: 60.8 bits (146), Expect = 5.2e-06 Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 0
BLAST of CsaV3_4G012220 vs. NCBI nr
Match: XP_021901894.1 (uncharacterized protein LOC110817594 isoform X1 [Carica papaya] >XP_021901895.1 uncharacterized protein LOC110817594 isoform X1 [Carica papaya]) HSP 1 Score: 60.1 bits (144), Expect = 8.8e-06 Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0
BLAST of CsaV3_4G012220 vs. NCBI nr
Match: XP_021901896.1 (uncharacterized protein LOC110817594 isoform X2 [Carica papaya]) HSP 1 Score: 60.1 bits (144), Expect = 8.8e-06 Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0
BLAST of CsaV3_4G012220 vs. NCBI nr
Match: CDP09830.1 (unnamed protein product [Coffea canephora]) HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05 Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0
BLAST of CsaV3_4G012220 vs. ExPASy TrEMBL
Match: A0A068UMS2 (MINDY_DUB domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030303001 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06 Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0
BLAST of CsaV3_4G012220 vs. ExPASy TrEMBL
Match: A0A6P6U3X0 (ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X2 OS=Coffea arabica OX=13443 GN=LOC113707260 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06 Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0
BLAST of CsaV3_4G012220 vs. ExPASy TrEMBL
Match: A0A6P6U5L6 (ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X1 OS=Coffea arabica OX=13443 GN=LOC113707260 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06 Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0
BLAST of CsaV3_4G012220 vs. ExPASy TrEMBL
Match: A0A6P6TVL4 (ubiquitin carboxyl-terminal hydrolase MINDY-1-like OS=Coffea arabica OX=13443 GN=LOC113704214 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06 Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0
BLAST of CsaV3_4G012220 vs. ExPASy TrEMBL
Match: A0A6P6U466 (uncharacterized protein LOC113707260 isoform X3 OS=Coffea arabica OX=13443 GN=LOC113707260 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06 Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0
BLAST of CsaV3_4G012220 vs. TAIR 10
Match: AT4G11860.1 (Protein of unknown function (DUF544) ) HSP 1 Score: 53.5 bits (127), Expect = 7.7e-08 Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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