CsaV3_4G012070 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G012070
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionATP-dependent DNA helicase
Locationchr4: 9363011 .. 9363628 (-)
RNA-Seq ExpressionCsaV3_4G012070
SyntenyCsaV3_4G012070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGATTCCATGATCTTGCACCTTTAGGCTTTAGTTATTAGATTCTAACTAGCCAAAGTTGTGAGATTGTTATTTGATATGTCATGAAATGATTGTTAGACGATTCAGTAATGGTACAGGATCAGCTAAAAATGCATGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCAGAAGAAGTCCGTCTATCATTGGGGGGCAAATATAGAGAAGGAAATGGACAAGGTACTACAACGAGAAAACTCTATACAGAACTAAACCAACGGCGACCATTGGCTCTAGCAAAGTTCGAAGCTTGGAAAATGTGGCACGAAGATGGTCTCTCAATACAGAGAATTGCTGTAAGTATATTTTTTTTTCAACTTTTCGAAGTTTTTGAGAAAAAAAGGCTTATGAAGACGAACATAGCAACATGGCAATTTGTAAGCCTATTCACACATTGAACTTCACCCATTGAACATAGCAGCATGTATATATCCATGCTGCTTTTTATGGCATGAAAAAAGTTTTACTTCCAAACCAAAAACTATCAACGGTAGTAGTTATTGAAAATAAGCTAATTAAATTTGAACATGAGAGGAACTAGACTTAATGTTGAAAGGGATGCAAGCGACCAC

mRNA sequence

ATGGTACAGGATCAGCTAAAAATGCATGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCAGAAGAAGTCCGTCTATCATTGGGGGGCAAATATAGAGAAGGAAATGGACAAGGTACTACAACGAGAAAACTCTATACAGAACTAAACCAACGGCGACCATTGGCTCTAGCAAAGTTCGAAGCTTGGAAAATGTGGCACGAAGATGGTCTCTCAATACAGAGAATTGCTGTAAGTATATTTTTTTTTCAACTTTTCGAAGTTTTTGAGAAAAAAAGGCTTATGAAGACGAACATAGCAACATGGCAATTTGTAAGCCTATTCACACATTGA

Coding sequence (CDS)

ATGGTACAGGATCAGCTAAAAATGCATGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCAGAAGAAGTCCGTCTATCATTGGGGGGCAAATATAGAGAAGGAAATGGACAAGGTACTACAACGAGAAAACTCTATACAGAACTAAACCAACGGCGACCATTGGCTCTAGCAAAGTTCGAAGCTTGGAAAATGTGGCACGAAGATGGTCTCTCAATACAGAGAATTGCTGTAAGTATATTTTTTTTTCAACTTTTCGAAGTTTTTGAGAAAAAAAGGCTTATGAAGACGAACATAGCAACATGGCAATTTGTAAGCCTATTCACACATTGA

Protein sequence

MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKFEAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH*
Homology
[Close]
BLAST of CsaV3_4G012070 vs. NCBI nr
Match: KGN53924.2 (hypothetical protein Csa_019143 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 60
           MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF
Sbjct: 1   MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 60

Query: 61  EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 111
           EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH
Sbjct: 61  EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 110

[Close]
BLAST of CsaV3_4G012070 vs. NCBI nr
Match: XP_011653463.2 (uncharacterized protein LOC101222028 [Cucumis sativus] >KGN53928.2 hypothetical protein Csa_019113 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-25
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVKRLS++V LSL G+YR EGNGQGTT RKLYTE NQRRPLA AKFE
Sbjct: 598 QHLLKMHGDLILEAVKRLSQQVSLSLDGEYREEGNGQGTTMRKLYTEPNQRRPLAPAKFE 657

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 658 AWKMWHEDGLSIQKIA 673

[Close]
BLAST of CsaV3_4G012070 vs. NCBI nr
Match: XP_008442016.1 (PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YR EGNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 474 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 533

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 534 AWKMWHEDGLSIQKIA 549

[Close]
BLAST of CsaV3_4G012070 vs. NCBI nr
Match: XP_008442015.1 (PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X1 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YR EGNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 598 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 657

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 658 AWKMWHEDGLSIQKIA 673

[Close]
BLAST of CsaV3_4G012070 vs. NCBI nr
Match: KAA0041766.1 (ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YR EGNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 474 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 533

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 534 AWKMWHEDGLSIQKIA 549

[Close]
BLAST of CsaV3_4G012070 vs. ExPASy TrEMBL
Match: A0A0A0KWB6 (ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188670 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.0e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 60
           MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF
Sbjct: 421 MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 480

Query: 61  EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 111
           EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH
Sbjct: 481 EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 530

[Close]
BLAST of CsaV3_4G012070 vs. ExPASy TrEMBL
Match: A0A0A0L1A4 (ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188732 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.0e-25
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVKRLS++V LSL G+YR EGNGQGTT RKLYTE NQRRPLA AKFE
Sbjct: 371 QHLLKMHGDLILEAVKRLSQQVSLSLDGEYREEGNGQGTTMRKLYTEPNQRRPLAPAKFE 430

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 431 AWKMWHEDGLSIQKIA 446

[Close]
BLAST of CsaV3_4G012070 vs. ExPASy TrEMBL
Match: A0A5A7TI77 (ATP-dependent DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001150 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YR EGNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 474 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 533

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 534 AWKMWHEDGLSIQKIA 549

[Close]
BLAST of CsaV3_4G012070 vs. ExPASy TrEMBL
Match: A0A1S3B4Q2 (ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YR EGNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 598 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 657

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 658 AWKMWHEDGLSIQKIA 673

[Close]
BLAST of CsaV3_4G012070 vs. ExPASy TrEMBL
Match: A0A1S3B4R4 (ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYR-EGNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YR EGNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 474 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 533

Query: 63  AWKMWHEDGLSIQRIA 78
           AWKMWHEDGLSIQ+IA
Sbjct: 534 AWKMWHEDGLSIQKIA 549

The following BLAST results are available for this feature:
BLAST of CsaV3_4G012070 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53924.21.7e-54100.00hypothetical protein Csa_019143 [Cucumis sativus][more]
XP_011653463.22.1e-2584.21uncharacterized protein LOC101222028 [Cucumis sativus] >KGN53928.2 hypothetical ... [more]
XP_008442016.12.8e-2584.21PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo][more]
XP_008442015.12.8e-2584.21PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X1 [Cucumis melo][more]
KAA0041766.12.8e-2584.21ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo var. makuwa][more]
BLAST of CsaV3_4G012070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G012070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWB68.0e-55100.00ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188670 PE=3 SV=1[more]
A0A0A0L1A41.0e-2584.21ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188732 PE=3 SV=1[more]
A0A5A7TI771.3e-2584.21ATP-dependent DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A1S3B4Q21.3e-2584.21ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1[more]
A0A1S3B4R41.3e-2584.21ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1[more]
BLAST of CsaV3_4G012070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G012070.1CsaV3_4G012070.1mRNA