CsaV3_4G011800 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G011800
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 8829847 .. 8830846 (+)
RNA-Seq ExpressionCsaV3_4G011800
SyntenyCsaV3_4G011800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCGATTGCGGACCAAATGTGATCCAGGCCCAGATAAAGAATCCGAACTGGTCCAGCCCATCAGAAGATAATTGAGTTAGCCGAATTGAAACTAGGCCCAAACAGTGTGGCCCATAATTGAACTTGAAATGAGAAATGGGTTTAACTACAAACAATATAGGCCGAAATGTACTCTAACGGTCTTATACGTTGAAGAACAAAATTTTTCATCCTCCATTAATCTCTATCGGTCTAATGATTAAAACAAAGTGTGTTTATTATATAGTGCCAATGTATAAAATTTATGCATTCGTCGGTAGAATTAAAACTCAAATAATTAAGCACTCGATAGCACACTCATCTTCTTTTCCTTTAATTTCATCTTTTTCCTTTTAATAACTTTTTTTTTTCTTTTCTTCAATAATTAACCTCAAAAATTAACTTATTATTATTCTTATTTTCATTTTCAACGATAAAGCAACAAAAAATTTAGTATCAATATGTGATTGAAGAAGAGAGTAGGAATTTGTGGGAATTACAACAGCAACTAAAGTTTAGTTCTATAAAAGTTGAGGGACCAAACAGCAAATATTTTTAACTTATTGAAGTCTGATTAAAGTTGAAAAAGATACAAAATAAAAAGTTGTTTGGGTATTTGATACAAAGCATAAAGCCAATAAGCCATTACCACTATTCAATCTCTTTTGTTTCTCTTTACAATATATATTCAAAATGAGGGCAGCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCACACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGCGGAGGAGGAGAAGAAGTGA

mRNA sequence

ATGAACCGATTGCGGACCAAATCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCACACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGCGGAGGAGGAGAAGAAGTGA

Coding sequence (CDS)

ATGAACCGATTGCGGACCAAATCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCACACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGCGGAGGAGGAGAAGAAGTGA

Protein sequence

MNRLRTKSPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK*
Homology
BLAST of CsaV3_4G011800 vs. NCBI nr
Match: KGN53864.2 (hypothetical protein Csa_019149 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 7.8e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MNRLRTKSPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARL 60
          MNRLRTKSPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARL
Sbjct: 1  MNRLRTKSPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARL 60

Query: 61 CGGGTDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK 99
          CGGGTDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK
Sbjct: 61 CGGGTDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK 98

BLAST of CsaV3_4G011800 vs. NCBI nr
Match: XP_008460761.1 (PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo] >KAA0056141.1 uncharacterized protein E6C27_scaffold697G00230 [Cucumis melo var. makuwa] >TYK14146.1 uncharacterized protein E5676_scaffold513G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 0

Query: 9  PPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDD 68
          PPNAIKLDGQMQLLPEPPAEPSHSTRHS+ TLLVLLAAITILGVIARVFARLC GGTDD 
Sbjct: 5  PPNAIKLDGQMQLLPEPPAEPSHSTRHSVQTLLVLLAAITILGVIARVFARLCDGGTDD- 64

Query: 69 NIEGWVQTRCNSCIDGSS--PPPSQVAEEEKK 99
           IEGWVQTRCNSCIDGSS   PPS+VAEEEKK
Sbjct: 65 -IEGWVQTRCNSCIDGSSLPAPPSEVAEEEKK 94

BLAST of CsaV3_4G011800 vs. NCBI nr
Match: XP_010653790.1 (PREDICTED: uncharacterized protein LOC100250289 [Vitis vinifera] >RVX09549.1 hypothetical protein CK203_012350 [Vitis vinifera])

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 0

Query: 12  AIKLDGQM-QLLPEPPA--EPSHSTRHSLHTLLVLLAAITILGVIARVFARLCG----GG 71
           A+++D Q+  L+  PPA  EPSHST  S+ TL+V+LA ITI+GVIA + ARLCG    GG
Sbjct: 9   AVRMDEQLPPLVQAPPAVGEPSHSTHRSIETLVVVLAVITIVGVIAGIIARLCGGRHFGG 68

Query: 72  TDDDNIEGWVQTRCNSCIDG---SSPPPSQVAEEEK 98
             +++IEGWV+ +C SCIDG   ++PPP   AEE K
Sbjct: 69  NGENDIEGWVERKCRSCIDGGIPAAPPPPPPAEESK 104

BLAST of CsaV3_4G011800 vs. NCBI nr
Match: XP_034693668.1 (uncharacterized protein LOC117920325 [Vitis riparia])

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-15
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 0

Query: 12  AIKLDGQM-QLLPEPPA--EPSHSTRHSLHTLLVLLAAITILGVIARVFARLCG----GG 71
           A+++D Q+  L+  PPA  EPSHST  SL TL+V+LA ITI+GVIA + ARLCG    GG
Sbjct: 9   AVRMDEQLPPLVQAPPAVGEPSHSTHRSLETLVVVLAVITIVGVIAGIIARLCGGRHFGG 68

Query: 72  TDDDNIEGWVQTRCNSCIDGS-----SPPPSQVAEEEK 98
             +++IEGWV+ +C SCIDG       PPP   AEE K
Sbjct: 69  NGENDIEGWVERKCRSCIDGGIPAPPPPPPPPPAEESK 106

BLAST of CsaV3_4G011800 vs. NCBI nr
Match: XP_015581142.1 (uncharacterized protein LOC8260149 [Ricinus communis])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 0

Query: 13  IKLDGQMQLLPEPP---AEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDDN 72
           + L  Q+Q + +PP    EPS  +  S+ TL+V+LA ITI+GVIA V ARLCGG   + +
Sbjct: 12  VSLHDQLQSVVQPPPAVVEPSRYSHRSIETLVVVLAVITIVGVIAGVIARLCGGRHGEHD 71

Query: 73  IEGWVQTRCNSCIDGSSPPPSQVA----EEEKK 99
           IEGWV+ RC SCIDG  PPP++ A    EE KK
Sbjct: 72  IEGWVERRCRSCIDGGVPPPAEEAKPATEEAKK 104

BLAST of CsaV3_4G011800 vs. ExPASy TrEMBL
Match: A0A0A0KWC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166970 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.7e-44
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 8  SPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDD 67
          +PPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDD
Sbjct: 4  APPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDD 63

Query: 68 DNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK 99
          DNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK
Sbjct: 64 DNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK 94

BLAST of CsaV3_4G011800 vs. ExPASy TrEMBL
Match: A0A5A7URI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold513G00170 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.4e-36
Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 0

Query: 9  PPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDD 68
          PPNAIKLDGQMQLLPEPPAEPSHSTRHS+ TLLVLLAAITILGVIARVFARLC GGTDD 
Sbjct: 5  PPNAIKLDGQMQLLPEPPAEPSHSTRHSVQTLLVLLAAITILGVIARVFARLCDGGTDD- 64

Query: 69 NIEGWVQTRCNSCIDGSS--PPPSQVAEEEKK 99
           IEGWVQTRCNSCIDGSS   PPS+VAEEEKK
Sbjct: 65 -IEGWVQTRCNSCIDGSSLPAPPSEVAEEEKK 94

BLAST of CsaV3_4G011800 vs. ExPASy TrEMBL
Match: A0A1S3CEC8 (uncharacterized protein LOC103499518 OS=Cucumis melo OX=3656 GN=LOC103499518 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.4e-36
Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 0

Query: 9  PPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDD 68
          PPNAIKLDGQMQLLPEPPAEPSHSTRHS+ TLLVLLAAITILGVIARVFARLC GGTDD 
Sbjct: 5  PPNAIKLDGQMQLLPEPPAEPSHSTRHSVQTLLVLLAAITILGVIARVFARLCDGGTDD- 64

Query: 69 NIEGWVQTRCNSCIDGSS--PPPSQVAEEEKK 99
           IEGWVQTRCNSCIDGSS   PPS+VAEEEKK
Sbjct: 65 -IEGWVQTRCNSCIDGSSLPAPPSEVAEEEKK 94

BLAST of CsaV3_4G011800 vs. ExPASy TrEMBL
Match: A0A438JKT6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_012350 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.5e-16
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 0

Query: 12  AIKLDGQM-QLLPEPPA--EPSHSTRHSLHTLLVLLAAITILGVIARVFARLCG----GG 71
           A+++D Q+  L+  PPA  EPSHST  S+ TL+V+LA ITI+GVIA + ARLCG    GG
Sbjct: 9   AVRMDEQLPPLVQAPPAVGEPSHSTHRSIETLVVVLAVITIVGVIAGIIARLCGGRHFGG 68

Query: 72  TDDDNIEGWVQTRCNSCIDG---SSPPPSQVAEEEK 98
             +++IEGWV+ +C SCIDG   ++PPP   AEE K
Sbjct: 69  NGENDIEGWVERKCRSCIDGGIPAAPPPPPPAEESK 104

BLAST of CsaV3_4G011800 vs. ExPASy TrEMBL
Match: B9SUE5 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0750160 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.5e-15
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 0

Query: 13 IKLDGQMQLLPEPP---AEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDDN 72
          + L  Q+Q + +PP    EPS  +  S+ TL+V+LA ITI+GVIA V ARLCGG   + +
Sbjct: 6  VSLHDQLQSVVQPPPAVVEPSRYSHRSIETLVVVLAVITIVGVIAGVIARLCGGRHGEHD 65

Query: 73 IEGWVQTRCNSCIDGSSPPPSQVA----EEEKK 99
          IEGWV+ RC SCIDG  PPP++ A    EE KK
Sbjct: 66 IEGWVERRCRSCIDGGVPPPAEEAKPATEEAKK 98

BLAST of CsaV3_4G011800 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 50/109 (45.87%), Postives = 63/109 (57.80%), Query Frame = 0

Query: 14  KLDGQMQLLP-----EPPA--EPSHSTRH-SLHTLLVLLAAITILGVIARVFARLCGG-- 73
           +LD Q+   P     +PP+  +PSH++ H S+ TL+V+LA ITIL V+A VFARLCGG  
Sbjct: 7   RLDDQLSTTPTTIYIDPPSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRH 66

Query: 74  ---GTDDDNIEGWVQTRCNSCIDGS-----------SPPPSQVAEEEKK 99
              G D D IEGWV+ +C SCID              PPP   AEE  K
Sbjct: 67  LSHGGDHD-IEGWVERKCRSCIDAGIPAVSAAPSPPPPPPPATAEERSK 114

BLAST of CsaV3_4G011800 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-05
Identity = 25/76 (32.89%), Postives = 38/76 (50.00%), Query Frame = 0

Query: 30 SHSTRHSLHTLLVLLAAITILGVIARVFARLCGG----GTDDDNIEGWVQTRCNSCIDG- 89
          S +   ++   + +   +T+L V+A V  RLC G    G  D ++E W ++RC SCIDG 
Sbjct: 24 SSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYGDYDMERWAESRCGSCIDGH 83

Query: 90 ---------SSPPPSQ 92
                    +PPP Q
Sbjct: 84 IHPHRPSPSPTPPPRQ 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53864.27.8e-48100.00hypothetical protein Csa_019149 [Cucumis sativus][more]
XP_008460761.11.5e-3590.22PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo] >KAA0056141.1 unc... [more]
XP_010653790.11.3e-1553.13PREDICTED: uncharacterized protein LOC100250289 [Vitis vinifera] >RVX09549.1 hyp... [more]
XP_034693668.13.0e-1553.06uncharacterized protein LOC117920325 [Vitis riparia][more]
XP_015581142.11.1e-1451.61uncharacterized protein LOC8260149 [Ricinus communis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWC69.7e-4498.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166970 PE=4 SV=1[more]
A0A5A7URI47.4e-3690.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CEC87.4e-3690.22uncharacterized protein LOC103499518 OS=Cucumis melo OX=3656 GN=LOC103499518 PE=... [more]
A0A438JKT66.5e-1653.13Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_012350 PE=4 SV=1[more]
B9SUE55.5e-1551.61Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0750160 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G57500.11.2e-1445.87unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G26520.13.0e-0532.89unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availablePANTHERPTHR33429:SF19FISSION REGULATOR-LIKE PROTEINcoord: 16..97
NoneNo IPR availablePANTHERPTHR33429OS02G0708000 PROTEIN-RELATEDcoord: 16..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G011800.1CsaV3_4G011800.1mRNA