CsaV3_4G011800 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACCGATTGCGGACCAAATGTGATCCAGGCCCAGATAAAGAATCCGAACTGGTCCAGCCCATCAGAAGATAATTGAGTTAGCCGAATTGAAACTAGGCCCAAACAGTGTGGCCCATAATTGAACTTGAAATGAGAAATGGGTTTAACTACAAACAATATAGGCCGAAATGTACTCTAACGGTCTTATACGTTGAAGAACAAAATTTTTCATCCTCCATTAATCTCTATCGGTCTAATGATTAAAACAAAGTGTGTTTATTATATAGTGCCAATGTATAAAATTTATGCATTCGTCGGTAGAATTAAAACTCAAATAATTAAGCACTCGATAGCACACTCATCTTCTTTTCCTTTAATTTCATCTTTTTCCTTTTAATAACTTTTTTTTTTCTTTTCTTCAATAATTAACCTCAAAAATTAACTTATTATTATTCTTATTTTCATTTTCAACGATAAAGCAACAAAAAATTTAGTATCAATATGTGATTGAAGAAGAGAGTAGGAATTTGTGGGAATTACAACAGCAACTAAAGTTTAGTTCTATAAAAGTTGAGGGACCAAACAGCAAATATTTTTAACTTATTGAAGTCTGATTAAAGTTGAAAAAGATACAAAATAAAAAGTTGTTTGGGTATTTGATACAAAGCATAAAGCCAATAAGCCATTACCACTATTCAATCTCTTTTGTTTCTCTTTACAATATATATTCAAAATGAGGGCAGCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCACACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGCGGAGGAGGAGAAGAAGTGA ATGAACCGATTGCGGACCAAATCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCACACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGCGGAGGAGGAGAAGAAGTGA ATGAACCGATTGCGGACCAAATCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCACACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGCGGAGGAGGAGAAGAAGTGA MNRLRTKSPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK* Homology
BLAST of CsaV3_4G011800 vs. NCBI nr
Match: KGN53864.2 (hypothetical protein Csa_019149 [Cucumis sativus]) HSP 1 Score: 200.3 bits (508), Expect = 7.8e-48 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
BLAST of CsaV3_4G011800 vs. NCBI nr
Match: XP_008460761.1 (PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo] >KAA0056141.1 uncharacterized protein E6C27_scaffold697G00230 [Cucumis melo var. makuwa] >TYK14146.1 uncharacterized protein E5676_scaffold513G00170 [Cucumis melo var. makuwa]) HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35 Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 0
BLAST of CsaV3_4G011800 vs. NCBI nr
Match: XP_010653790.1 (PREDICTED: uncharacterized protein LOC100250289 [Vitis vinifera] >RVX09549.1 hypothetical protein CK203_012350 [Vitis vinifera]) HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15 Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 0
BLAST of CsaV3_4G011800 vs. NCBI nr
Match: XP_034693668.1 (uncharacterized protein LOC117920325 [Vitis riparia]) HSP 1 Score: 92.0 bits (227), Expect = 3.0e-15 Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 0
BLAST of CsaV3_4G011800 vs. NCBI nr
Match: XP_015581142.1 (uncharacterized protein LOC8260149 [Ricinus communis]) HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14 Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 0
BLAST of CsaV3_4G011800 vs. ExPASy TrEMBL
Match: A0A0A0KWC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166970 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 9.7e-44 Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of CsaV3_4G011800 vs. ExPASy TrEMBL
Match: A0A5A7URI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold513G00170 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 7.4e-36 Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 0
BLAST of CsaV3_4G011800 vs. ExPASy TrEMBL
Match: A0A1S3CEC8 (uncharacterized protein LOC103499518 OS=Cucumis melo OX=3656 GN=LOC103499518 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 7.4e-36 Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 0
BLAST of CsaV3_4G011800 vs. ExPASy TrEMBL
Match: A0A438JKT6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_012350 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 6.5e-16 Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 0
BLAST of CsaV3_4G011800 vs. ExPASy TrEMBL
Match: B9SUE5 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0750160 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 5.5e-15 Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 0
BLAST of CsaV3_4G011800 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14 Identity = 50/109 (45.87%), Postives = 63/109 (57.80%), Query Frame = 0
BLAST of CsaV3_4G011800 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 3.0e-05 Identity = 25/76 (32.89%), Postives = 38/76 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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