CsaV3_4G010540 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G010540
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	protein POLYCHOME
Location	chr4: 8419019 .. 8422282 (+)
RNA-Seq Expression	CsaV3_4G010540
Synteny	CsaV3_4G010540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCACGTGTGAGGAACTTTGCAAAAAATTGAAAATGAGTTTAAGTAGCGCCCAAATTTTCCCATTTCAAATCTGCCCAAAATTTCGACTTCTCTCAAACCAGCTTCACCTTCTTCCCTCTCATTTTTCATCTCCGCTCCTCACAGATCGCCGCCTCCCACCAATCCACCGCCATTTTTTTTTTTGGAATACTCCATTCAAGCCCACTGGAATCTCACGGTATGAATCAATTTCCATCTTCCTTTTCTCCATTTCTCCATTTCTCTTTTCTTTGGACAATGTTTACTGAAATGTAGTTTTTGGCTTTAACTCAAAGATTCTTAGTTCTTGTTACTGTAGATTTGGATTAGGGCTTCTCTTGCTTTCTTCTTCTTTGAAATGTTTGTTTTCTTGCTTCTTCCTTTTGAAGTTCCATAATGTCGGAAGCAAGGGATAGATTGGAGAGGCAAGTGGATTATGCCGAGGTATTTGCTCGTCGGAGGTCGGAAGGTATATTGGACGAGCAAGAAATGGGTTCTAATTTGATAGGTACTCCGATTGCACGCGCCACTACGACCAATACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTACAAATCTGAGACGTACTTTTGGTTCTCCCATTTCTGGCGGAATTGGGCGTAATAGATTTCTTTATAGAACTCCAGTGTTGAGCCGTGAGAATCCGTCGGCTGGGAGTTCCCGGCGGAGTAGATCTCGGGGTAGGAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTTCGTGACATAACTGCAGTTGTGAGGGTAAATTACTATTTTCCCTCTTACTTTCATATTTTTCTGCTTAATTTTTCAAGGATTTCTTCTGTTCTGCCTACAAGTTTGTGGATTACTTGGATATTTGATTCATATTGTTTATAGCAAACATGTTCTCATTGTTGCATATGGTCTCTGGTATGTATATACATACGCCAATTCCTACCTAGTAGATATTTGTTCTCCGATGCAGGCTCTTATTTTAATTTACTTCATCTTCGGAGAACCCCATCTTTTGATTTTCTGGTGTAGATGTTGTGATTATTTTTTCTGTTGTTCTGTTGGAAAGCATTTGTTATGATTTGATTTTTGACCGAAAATGTTGTTGCATATGTCTAATATTTTTTTGTGAATCCTTAGATTGGATCACTTTCCTTTTTCTTTAAGTTAATTAATCAATAAATTTTAAGTGTTTTTAAGCTATGTACTACCTACCTGTTTGTCTAAAAAGGAGATTCTTTTGGTTTTGTAATATCCATGCCCAATGATTTCATATGAAACATTAACAGTCTGGATAATGAGAACCTGTCCACCATTAACTAAAGTTAACATAACTCGTCTCCTTTCTTAGATTTTATATTCATTGTTTAATTGGATTCCAATCCGTTTTTAGGCTTCATTTTCACCTGTTATTAGAACTACTTTTTGGTGGGCTCAATATGCTTCGGCTGGTTACTAGGATTCGCTGACTAGGTAGTCCAAATCAACATTTTGGGCGTTTGTCAAGCTGTCATTTGAAAGTCAAATTGCTGATTTTACTAGCCAATTAAAATTTTTAATTATGATTGCAGTGATATTAACATCTGTTGTTATCGTGACTTGTGGGGCATGTGTGCTGATTAAGCTTGTGTCGACACTTTTAAATTATCTGACCTTACGTTTCCAATGTATTAAATTAATTAAATTATTTTGTTTGAAAAGTTTCAACGGACGAAAAAATATGTTTTGAGCCAGAATATCAATTTTAATTTTTCAAGCATCTGGATGCATGTATATTAATTGACCTTGAAATTGTTAAGATTACGTAATTTTATTTTAAGTAACTTAATGTAAGGCATTATGCATCACTTTTCTCGGTGAATCATACACTAAATCAAACCATTATGAAGAAAATCTTTGTAATGTCTAAAAATAGAATTTTGATTTTTAAAATATGTGTAAAGTAAATGTGTCTTTTTTTTTGTGCTATCAGTTTTTACCATATATTATATCACGTTATAGTGCATCATGTGAGGCTATGTCACATGTCTGTGTCTTTGTACCCTTCATCTAAATTCTTTGCTACTTTTTTGGTTGATTCGCTGATAATTTTGCTGTCTATGTGAAATATTCCTCTCATCTTTTCACGTCTCTGAGGATTTTATTTGGGAATTGTCTTTTAGAAGTTTTCTTTGAGCTATGTTCTTTCAATAATCAAAGGGAATTCTCTTTAAAGCATTGCTGCGTCTGGGCTCAACTTATTTAAATTTCCATTTCCTGCTTTATCCTGCATGTGGGCATTTGGATATTTTGTTACTGCTCCATTTCATTAAATATCACCTGTGTTTTTCCTAGAAATCTCCTTTCCTAGTTTTTCAATTGAGGCATTTGGAAGGCCATGTGGTTAATTTCTAAGGAATCGTATTCCTTTAATCAGGCAATCGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAGTAGTCCAGCTCCCTCGGACGAAAGAGCACTAGAGTATAGCGTATCCGTGGCAAGTGATCATCAAGAGCCAATCATTTCTCTGCTCACCCCAAAACCAACCGTAGGAAAAGTTCCAAAGATTCTTCGTGGAATCGCGAATGAGAACACGGTAGGGGCCGAAATTCTGACTCCTCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTACAGAAATTGAAAAGAACACCAAGTGCCAAGAAAGCAGAGAGGGAGAAAAGGGTTCGCACTTTAATGTCGTTTCGTTGATTCATTTCAACACTGACCAGAATTCTTTTGGCAAATCATCAGAGACTCAACTCCAGAATTTTTAGGATCAATCATCTGCTGATGATTACTTTAGTGGTCAAGAACGGCCGTTGATTAGAGAGGGAGAAAGAGAATGCTCATCGTCTGATGAAATCTCATCTCTTGGAGGACTATTATGTTAGTTTCCTGTTAAAAAAATGAATCCTTTTCATTTGCATAAACCATCTATAATATGCTTTTAGATGATTAGTAAGGCATTTTTACAAATATGTAGGCTATTCTTGTTGATGTAGGGTCTGCCCATTGTTTGTTTACTACAGATATAGGATAGTTATAAAGCAGGCCTTTTTTGGGCAGTGGAAATGATGTAAATAGAAGTTTTATTCACTCTAGAACTTGACATTTTTGCCTATCAAAATCTTATTAGATGCATATTTTTTTATTGGTTTCT

mRNA sequence

ATGAGTTTAAGTAGCGCCCAAATTTTCCCATTTCAAATCTGCCCAAAATTTCGACTTCTCTCAAACCAGCTTCACCTTCTTCCCTCTCATTTTTCATCTCCGCTCCTCACAGATCGCCGCCTCCCACCAATCCACCGCCATTTTTTTTTTTGGAATACTCCATTCAAGCCCACTGGAATCTCACGTTCCATAATGTCGGAAGCAAGGGATAGATTGGAGAGGCAAGTGGATTATGCCGAGGTATTTGCTCGTCGGAGGTCGGAAGGTATATTGGACGAGCAAGAAATGGGTTCTAATTTGATAGGTACTCCGATTGCACGCGCCACTACGACCAATACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTACAAATCTGAGACGTACTTTTGGTTCTCCCATTTCTGGCGGAATTGGGCGTAATAGATTTCTTTATAGAACTCCAGTGTTGAGCCGTGAGAATCCGTCGGCTGGGAGTTCCCGGCGGAGTAGATCTCGGGGTAGGAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTTCGTGACATAACTGCAGTTGTGAGGGCAATCGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAGTAGTCCAGCTCCCTCGGACGAAAGAGCACTAGAGTATAGCGTATCCGTGGCAAGTGATCATCAAGAGCCAATCATTTCTCTGCTCACCCCAAAACCAACCGTAGGAAAAGTTCCAAAGATTCTTCGTGGAATCGCGAATGAGAACACGGTAGGGGCCGAAATTCTGACTCCTCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTACAGAAATTGAAAAGAACACCAAGTGCCAAGAAAGCAGAGAGGGAGAAAAGGGTTCGCACTTTAATGTCGTTTCGTTGA

Coding sequence (CDS)

ATGAGTTTAAGTAGCGCCCAAATTTTCCCATTTCAAATCTGCCCAAAATTTCGACTTCTCTCAAACCAGCTTCACCTTCTTCCCTCTCATTTTTCATCTCCGCTCCTCACAGATCGCCGCCTCCCACCAATCCACCGCCATTTTTTTTTTTGGAATACTCCATTCAAGCCCACTGGAATCTCACGTTCCATAATGTCGGAAGCAAGGGATAGATTGGAGAGGCAAGTGGATTATGCCGAGGTATTTGCTCGTCGGAGGTCGGAAGGTATATTGGACGAGCAAGAAATGGGTTCTAATTTGATAGGTACTCCGATTGCACGCGCCACTACGACCAATACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTACAAATCTGAGACGTACTTTTGGTTCTCCCATTTCTGGCGGAATTGGGCGTAATAGATTTCTTTATAGAACTCCAGTGTTGAGCCGTGAGAATCCGTCGGCTGGGAGTTCCCGGCGGAGTAGATCTCGGGGTAGGAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTTCGTGACATAACTGCAGTTGTGAGGGCAATCGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAGTAGTCCAGCTCCCTCGGACGAAAGAGCACTAGAGTATAGCGTATCCGTGGCAAGTGATCATCAAGAGCCAATCATTTCTCTGCTCACCCCAAAACCAACCGTAGGAAAAGTTCCAAAGATTCTTCGTGGAATCGCGAATGAGAACACGGTAGGGGCCGAAATTCTGACTCCTCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTACAGAAATTGAAAAGAACACCAAGTGCCAAGAAAGCAGAGAGGGAGAAAAGGGTTCGCACTTTAATGTCGTTTCGTTGA

Protein sequence

MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRLPPIHRHFFFWNTPFKPTGISRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREKRVRTLMSFR*

Homology

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BLAST of CsaV3_4G010540 vs. NCBI nr
Match: KGN53824.1 (hypothetical protein Csa_015343 [Cucumis sativus])

HSP 1 Score: 604.4 bits (1557), Expect = 5.7e-169
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRLPPIHRHFFFWNTPFKPTGI 60
           MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRLPPIHRHFFFWNTPFKPTGI
Sbjct: 1   MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRLPPIHRHFFFWNTPFKPTGI 60

Query: 61  SRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTN 120
           SRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTN
Sbjct: 61  SRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTN 120

Query: 121 PGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWY 180
           PGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWY
Sbjct: 121 PGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWY 180

Query: 181 PRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLL 240
           PRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLL
Sbjct: 181 PRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLL 240

Query: 241 TPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKA 300
           TPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKA
Sbjct: 241 TPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKA 300

Query: 301 EREKRVRTLMSFR 314
           EREKRVRTLMSFR
Sbjct: 301 EREKRVRTLMSFR 313

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BLAST of CsaV3_4G010540 vs. NCBI nr
Match: XP_004150162.1 (protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 471.5 bits (1212), Expect = 5.8e-129
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60

Query: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184
           GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304
           TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 305 RVRTLMSFR 314
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

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BLAST of CsaV3_4G010540 vs. NCBI nr
Match: XP_008460799.1 (PREDICTED: protein POLYCHOME [Cucumis melo] >KAA0053198.1 protein POLYCHOME [Cucumis melo var. makuwa] >TYK00145.1 protein POLYCHOME [Cucumis melo var. makuwa])

HSP 1 Score: 463.4 bits (1191), Expect = 1.6e-126
Identity = 245/249 (98.39%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTT  AQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184
           GGG NLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304
           TVGKVPKILRGIANENTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 305 RVRTLMSFR 314
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

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BLAST of CsaV3_4G010540 vs. NCBI nr
Match: XP_038881398.1 (protein POLYCHOME [Benincasa hispida])

HSP 1 Score: 434.1 bits (1115), Expect = 1.0e-117
Identity = 229/249 (91.97%), Postives = 238/249 (95.58%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIAR TTT TAQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARPTTTTTAQQRPTNPGPG 60

Query: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184
           GGG NLRR FGSPISGGIGRNRFLYR+PVL+REN +AGSSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRAFGSPISGGIGRNRFLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRTP 120

Query: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244
           LRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEY+V VA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYTVLVAGDHQEPSISLVTPKP 180

Query: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304
           TVGKV KILRGIANENTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVRKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 305 RVRTLMSFR 314
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

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BLAST of CsaV3_4G010540 vs. NCBI nr
Match: KAG6595661.1 (Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 412.5 bits (1059), Expect = 3.2e-111
Identity = 224/263 (85.17%), Postives = 240/263 (91.25%), Query Frame = 0


Query: 56  KPTGISRSIMSEARDRLERQVDYAEVFARRRSE-GILDEQEMGSNLIGTPIARATTTNTA 115
           KPTGISRSIMSE+RDRLERQVDYAEVFARRRSE GILDEQEM + LIGTPIARATTT TA
Sbjct: 220 KPTGISRSIMSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTA 279

Query: 116 QQRPTNPGPGGGGTN----LRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSR 175
           QQRPTN GPGGGG       RR+FGSPISGGIGRNRFLYR+PVLSREN +AGSSRRSRSR
Sbjct: 280 QQRPTNLGPGGGGGGGGAIPRRSFGSPISGGIGRNRFLYRSPVLSRENTAAGSSRRSRSR 339

Query: 176 GRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVAS 235
            R+SVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALE+S SV+ 
Sbjct: 340 VRHSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEFSASVSG 399

Query: 236 DHQEPIISLLTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQK 295
            HQEP +SL+TPKPTVGKV KILRGIANEN   +E+LTPQKKLLNSIDKVEKVV EELQK
Sbjct: 400 GHQEPDVSLVTPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQK 459

Query: 296 LKRTPSAKKAEREKRVRTLMSFR 314
           L++TPSAK+AEREKRVRTLMSFR
Sbjct: 460 LRKTPSAKRAEREKRVRTLMSFR 482

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BLAST of CsaV3_4G010540 vs. ExPASy Swiss-Prot
Match: O48533 (Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.7e-52
Identity = 137/262 (52.29%), Postives = 164/262 (62.60%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 124
           M EARDR+ERQVDY   F  RRS GI LDE     NL G+P+ R  +  T        G 
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 125 -GGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPR 184
             G G  +R  FG   +GG  R +  +R+P   REN S G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 185 TPLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLLT 244
           TPLRDI+AVVRAIER RAR+   EG G D  +P P     L+  V ++  H E   S++T
Sbjct: 121 TPLRDISAVVRAIERRRARM--GEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 245 PKPTVG----------KVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKL 304
           P P++G          KV +IL  I  ENT   + LTP+KKLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

Query: 305 KRTPSAKKAEREKRVRTLMSFR 314
           K TPSAK+AEREKRVRTLMS R
Sbjct: 241 KSTPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of CsaV3_4G010540 vs. ExPASy Swiss-Prot
Match: Q9M2R1 (Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.3e-34
Identity = 116/266 (43.61%), Postives = 143/266 (53.76%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 124
           M EARDR ER VDY+ +FA RR  GI LDE +   +LI +P+            P     
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPV-----------NPDIGSI 60

Query: 125 GGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 184
           GG G  +R  F +   G        +R P   REN    ++RR R  G   +LP WYPRT
Sbjct: 61  GGTGGLVRGNFTTWRPGNGRGGHTPFRLP-QGRENMPIVTARRGRGGG---LLPSWYPRT 120

Query: 185 PLRDITAVVRAIERTRARLRENEGQGSDSS-----PAPSDERALEYSVSVASDHQEPIIS 244
           PLRDIT +VRAIER     R   G G D       P       LE  V ++ +H+    S
Sbjct: 121 PLRDITHIVRAIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK---CS 180

Query: 245 LLTPKPTVG----------KVPKILRGIANE-NTVGAEILTPQKKLLNSIDKVEKVVMEE 304
           ++TP P+VG          KV K+L  I  E     A  +TP+KKLLNSIDKVEK+VM E
Sbjct: 181 MVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAE 240

Query: 305 LQKLKRTPSAKKAEREKRVRTLMSFR 314
           +QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 241 IQKLKSTPQAKREEREKRVRTLMTMR 243

[Close]

BLAST of CsaV3_4G010540 vs. ExPASy TrEMBL
Match: A0A0A0KY99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 604.4 bits (1557), Expect = 2.8e-169
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRLPPIHRHFFFWNTPFKPTGI 60
           MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRLPPIHRHFFFWNTPFKPTGI
Sbjct: 1   MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRLPPIHRHFFFWNTPFKPTGI 60

Query: 61  SRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTN 120
           SRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTN
Sbjct: 61  SRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTN 120

Query: 121 PGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWY 180
           PGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWY
Sbjct: 121 PGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWY 180

Query: 181 PRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLL 240
           PRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLL
Sbjct: 181 PRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLL 240

Query: 241 TPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKA 300
           TPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKA
Sbjct: 241 TPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKA 300

Query: 301 EREKRVRTLMSFR 314
           EREKRVRTLMSFR
Sbjct: 301 EREKRVRTLMSFR 313

[Close]

BLAST of CsaV3_4G010540 vs. ExPASy TrEMBL
Match: A0A5D3BM43 (Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00330 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 7.6e-127
Identity = 245/249 (98.39%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTT  AQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184
           GGG NLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304
           TVGKVPKILRGIANENTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 305 RVRTLMSFR 314
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of CsaV3_4G010540 vs. ExPASy TrEMBL
Match: A0A1S3CDA1 (protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 7.6e-127
Identity = 245/249 (98.39%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTT  AQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184
           GGG NLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304
           TVGKVPKILRGIANENTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 305 RVRTLMSFR 314
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of CsaV3_4G010540 vs. ExPASy TrEMBL
Match: A0A6J1HRM8 (protein POLYCHOME OS=Cucurbita maxima OX=3661 GN=LOC111466091 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 2.5e-106
Identity = 215/254 (84.65%), Postives = 231/254 (90.94%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSE-GILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 124
           MSE+RDRLERQVDYAEVFARRRSE GILDEQEM + LIGTPIARATTT TAQQRPTN GP
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 125 GGGGTN----LRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIW 184
           GGGG       RR+FGSPISGGIGRNRFLYR+PVLSREN +AGSSRRSRSR R+SVLPIW
Sbjct: 61  GGGGGGGGAIPRRSFGSPISGGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIW 120

Query: 185 YPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISL 244
           YPRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALE+S SV+  HQEP +SL
Sbjct: 121 YPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEFSASVSGGHQEPDVSL 180

Query: 245 LTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKK 304
           +TPKPTVGKV KILRGIANEN   +E+LTPQKKLLNSIDKVEKVV EELQKL++TPSAK+
Sbjct: 181 VTPKPTVGKVTKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAKR 240

Query: 305 AEREKRVRTLMSFR 314
           AEREKRVRTLMSFR
Sbjct: 241 AEREKRVRTLMSFR 254

[Close]

BLAST of CsaV3_4G010540 vs. ExPASy TrEMBL
Match: A0A6J1EBD1 (protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111432471 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 2.5e-106
Identity = 215/253 (84.98%), Postives = 231/253 (91.30%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSE-GILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 124
           MSE+RDRLERQVDYAEVFARRRSE GILDEQEM + LIGTPIARATTT TAQQRPTN GP
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 125 GGGGTN---LRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWY 184
           GGGG      RR+FGSPISGGIGRNRFLYR+PVLSREN +AGSSRRSRSR R+SVLPIWY
Sbjct: 61  GGGGGGGAIPRRSFGSPISGGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIWY 120

Query: 185 PRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLL 244
           PRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALE+S SV+  HQEP +SL+
Sbjct: 121 PRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEFSASVSGGHQEPDVSLV 180

Query: 245 TPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKA 304
           TPKPTVGKV KILRGIANEN   +E+LTPQKKLLNSIDKVEKVV EELQKL++TPSAK+A
Sbjct: 181 TPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAKRA 240

Query: 305 EREKRVRTLMSFR 314
           EREKRVRTLMSFR
Sbjct: 241 EREKRVRTLMSFR 253

[Close]

BLAST of CsaV3_4G010540 vs. TAIR 10
Match: AT2G42260.1 (uv-b-insensitive 4 )

HSP 1 Score: 207.2 bits (526), Expect = 1.9e-53
Identity = 137/262 (52.29%), Postives = 164/262 (62.60%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 124
           M EARDR+ERQVDY   F  RRS GI LDE     NL G+P+ R  +  T        G 
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 125 -GGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPR 184
             G G  +R  FG   +GG  R +  +R+P   REN S G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 185 TPLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLLT 244
           TPLRDI+AVVRAIER RAR+   EG G D  +P P     L+  V ++  H E   S++T
Sbjct: 121 TPLRDISAVVRAIERRRARM--GEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 245 PKPTVG----------KVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKL 304
           P P++G          KV +IL  I  ENT   + LTP+KKLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

Query: 305 KRTPSAKKAEREKRVRTLMSFR 314
           K TPSAK+AEREKRVRTLMS R
Sbjct: 241 KSTPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of CsaV3_4G010540 vs. TAIR 10
Match: AT3G57860.1 (UV-B-insensitive 4-like )

HSP 1 Score: 146.7 bits (369), Expect = 3.0e-35
Identity = 116/266 (43.61%), Postives = 143/266 (53.76%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTNTAQQRPTNPGP 124
           M EARDR ER VDY+ +FA RR  GI LDE +   +LI +P+            P     
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPV-----------NPDIGSI 60

Query: 125 GGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 184
           GG G  +R  F +   G        +R P   REN    ++RR R  G   +LP WYPRT
Sbjct: 61  GGTGGLVRGNFTTWRPGNGRGGHTPFRLP-QGRENMPIVTARRGRGGG---LLPSWYPRT 120

Query: 185 PLRDITAVVRAIERTRARLRENEGQGSDSS-----PAPSDERALEYSVSVASDHQEPIIS 244
           PLRDIT +VRAIER     R   G G D       P       LE  V ++ +H+    S
Sbjct: 121 PLRDITHIVRAIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK---CS 180

Query: 245 LLTPKPTVG----------KVPKILRGIANE-NTVGAEILTPQKKLLNSIDKVEKVVMEE 304
           ++TP P+VG          KV K+L  I  E     A  +TP+KKLLNSIDKVEK+VM E
Sbjct: 181 MVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAE 240

Query: 305 LQKLKRTPSAKKAEREKRVRTLMSFR 314
           +QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 241 IQKLKSTPQAKREEREKRVRTLMTMR 243

The following BLAST results are available for this feature:

BLAST of CsaV3_4G010540 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53824.1	5.7e-169	100.00	hypothetical protein Csa_015343 [Cucumis sativus]	[more]
XP_004150162.1	5.8e-129	100.00	protein POLYCHOME [Cucumis sativus]	[more]
XP_008460799.1	1.6e-126	98.39	PREDICTED: protein POLYCHOME [Cucumis melo] >KAA0053198.1 protein POLYCHOME [Cuc...	[more]
XP_038881398.1	1.0e-117	91.97	protein POLYCHOME [Benincasa hispida]	[more]
KAG6595661.1	3.2e-111	85.17	Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CsaV3_4G010540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48533	2.7e-52	52.29	Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1	[more]
Q9M2R1	4.3e-34	43.61	Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1	[more]

BLAST of CsaV3_4G010540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY99	2.8e-169	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1	[more]
A0A5D3BM43	7.6e-127	98.39	Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G0...	[more]
A0A1S3CDA1	7.6e-127	98.39	protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1	[more]
A0A6J1HRM8	2.5e-106	84.65	protein POLYCHOME OS=Cucurbita maxima OX=3661 GN=LOC111466091 PE=4 SV=1	[more]
A0A6J1EBD1	2.5e-106	84.98	protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111432471 PE=4 SV=1	[more]

BLAST of CsaV3_4G010540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42260.1	1.9e-53	52.29	uv-b-insensitive 4	[more]
AT3G57860.1	3.0e-35	43.61	UV-B-insensitive 4-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 185..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 292..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..171
None	No IPR available	PANTHER	PTHR35119:SF1	PROTEIN POLYCHOME	coord: 65..313
IPR034590	POLYCHOME/GIGAS CELL1	PANTHER	PTHR35119	PROTEIN POLYCHOME	coord: 65..313

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G010540.1	CsaV3_4G010540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
biological_process	GO:0051783	regulation of nuclear division
cellular_component	GO:0005634	nucleus