CsaV3_4G010320 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G010320
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Integrase catalytic domain-containing protein
Location	chr4: 8082341 .. 8083886 (+)
RNA-Seq Expression	CsaV3_4G010320
Synteny	CsaV3_4G010320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGATAGAGAAATCATCTCAACTTTAGCTGGGGTGGACAAGATCAAAATACGAAACAGTGACAGGGCAATCGATTTAACCACAGAGGTGAGATGCCCGGGTATCGGCCAAGACAATATTAGGAACGACCACCACAACCCATTCGGTGACCTAACCCATGACACTCATCGTCAGCTCCACCGCCCTCAATGAAAACACTGTTTTAAGAATATATGTAGAGGAATGATAATCTTTTGCAAAGCCAAGCTGCATCTATTAAAAATCTTGAGTGACAATTAAGACAATTGGCCAATGATATAGCTGAAAGACAAAAGGGAACCCTCCTCAGAAATACAGAATTACTAAATCAAAGGAGAGGCTCGGGAAAGGAAAAGTGTCAGGCAGTTACATTACACAGCGAAAGAAACTTTTCCATCCGCGAACCAGAATCTGAACGTAGAAATCCTACTTCTACCTATGGTACTGAAGCTCAAGTAATAATTCCCATTTCTTAAATTCATCTTTAACTAATTATAATTCTTCCTTGCAGAATAAGAACATGTCAAGCGAGGAAGTGGATCATTCAAGATGGGAAGAACAACACGAAGATGCGTCTGATAAAGCAAAGAGTTTCATTCCATTTTCGCCCCCTTTGTTTCCTGGTTGCCTAAGAAAGAAAGACAACAAACAACAGTTTGATAAGTTCTTAAATGTTTGAAAGCAACTTTACATTAATATACCATTCGTGGATGCACTAGAGCAAATGTCATCTTATGTCATGTTTCTGAAAGACATCTTAGCTAACAAAAGAAAAATCACTGGGTTAGAAACAATGGCTTTAATTGAAATCACGAACAACATCTGTAATATAAGAACACCAGCAAAGATGACAGACCCTGGAAGTTTCACTGTTCCCTCTTTGATAGGCGGAATTAATTTAGGTCGCACACTTTGCGAACTAGGAGCAAGTATCAACTTGATGCCACTATCTATTTTTAAAAAATGGAAAATAGGGGAAATTCAACCAACACTAATAAGGCTTAATTTCGAGGACAGATCCATAGCTAAGCCAGAGGGTAACATTGAAGATGTTTTGGTAAAAGTTGACAAATTCATGTTTCCCACAAATTTCATCATTCTGGACTATGAAGCTGGTAGAGAAGTGCCAATCATTTTAGGGCGGCCATTATTTCTAGCAACATGTCATACTCTCATAGATGTACACCAAGGGGAAATGACCATGTGTATAAATAGGGAGGAAGTAAAATTCAATGTCATTAATGCAATGAAATTTACTACTCATGTTAAAAGTTGGAGCGCCTTAAAAGACCTCGACTGAGACAATTGTGAAGAAGAAGCGTACCAAGATTTGTTTAACACGGAAGAAAACTTTGAAGAATAGACAAGTTCACTTGAAGAAGTGAACGTCATAGTGGGTGAAAAGAGCGTTGAGGAGGGAGAGGAGTTTGAAACACGAGAATTTCCACCACCTCCCCTGCTTAAATGCAAACCAAAAGAAACGCTGATATTGAATGTTGAGGAACGAACAGACCTGGAGCCTTAA

mRNA sequence

ATGAGGGATAGAGAAATCATCTCAACTTTAGCTGGGGTGGACAAGATCAAAATACGAAACAGTGACAGGGCAATCGATTTAACCACAGAGGTGAGATGCCCGGGTATCGGCCAAGACAATATTAGGAACGACCACCACAACCCATTCGCTGAAAGACAAAAGGGAACCCTCCTCAGAAATACAGAATTACTAAATCAAAGGAGAGGCTCGGGAAAGGAAAAGTGTCAGGCAGTTACATTACACAGCGAAAGAAACTTTTCCATCCGCGAACCAGAATCTGAACGTAGAAATCCTACTTCTACCTATGGTACTGAAGCTCAAAATAAGAACATGTCAAGCGAGGAAGTGGATCATTCAAGATGGGAAGAACAACACGAAGATGCGTCTGATAAAGCAAAGAGTTTCATTCCATTTTCGCCCCCTTTGTTTCCTGAAGTGAACGTCATAGTGGGTGAAAAGAGCGTTGAGGAGGGAGAGGAGTTTGAAACACGAGAATTTCCACCACCTCCCCTGCTTAAATGCAAACCAAAAGAAACGCTGATATTGAATGTTGAGGAACGAACAGACCTGGAGCCTTAA

Coding sequence (CDS)

ATGAGGGATAGAGAAATCATCTCAACTTTAGCTGGGGTGGACAAGATCAAAATACGAAACAGTGACAGGGCAATCGATTTAACCACAGAGGTGAGATGCCCGGGTATCGGCCAAGACAATATTAGGAACGACCACCACAACCCATTCGCTGAAAGACAAAAGGGAACCCTCCTCAGAAATACAGAATTACTAAATCAAAGGAGAGGCTCGGGAAAGGAAAAGTGTCAGGCAGTTACATTACACAGCGAAAGAAACTTTTCCATCCGCGAACCAGAATCTGAACGTAGAAATCCTACTTCTACCTATGGTACTGAAGCTCAAAATAAGAACATGTCAAGCGAGGAAGTGGATCATTCAAGATGGGAAGAACAACACGAAGATGCGTCTGATAAAGCAAAGAGTTTCATTCCATTTTCGCCCCCTTTGTTTCCTGAAGTGAACGTCATAGTGGGTGAAAAGAGCGTTGAGGAGGGAGAGGAGTTTGAAACACGAGAATTTCCACCACCTCCCCTGCTTAAATGCAAACCAAAAGAAACGCTGATATTGAATGTTGAGGAACGAACAGACCTGGAGCCTTAA

Protein sequence

MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRNTELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSRWEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETLILNVEERTDLEP*

Homology

[Close]

BLAST of CsaV3_4G010320 vs. NCBI nr
Match: KGN53802.1 (hypothetical protein Csa_014694 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 3.3e-103
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60
           MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN
Sbjct: 1   MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60

Query: 61  TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120
           TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR
Sbjct: 61  TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120

Query: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180
           WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL
Sbjct: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180

Query: 181 ILNVEERTDLEP 193
           ILNVEERTDLEP
Sbjct: 181 ILNVEERTDLEP 192

[Close]

BLAST of CsaV3_4G010320 vs. NCBI nr
Match: KAA0041246.1 (uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK16045.1 uncharacterized protein E5676_scaffold32G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-10
Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 50  AERQKGTLLRNTELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTE---- 109
           + R KG+L  NTE  NQ  GSGKEKCQ VTL S RN +IREP+ ERRN TST  T+    
Sbjct: 53  SRRPKGSLPSNTETPNQVGGSGKEKCQVVTLRSRRNLTIREPKFERRNSTSTSTTKIGSA 112

Query: 110 -----------------AQNKNMSSEEVDHSRWEEQHEDASDKAKSFIPFSPPLF 144
                             QNKN+ ++EV+ +R EEQ ++ S +  S  P S P F
Sbjct: 113 SNDSNPLNSSLTNNTSSLQNKNIPNKEVESTRREEQRDEESHETTSSNPLSSPPF 167

[Close]

BLAST of CsaV3_4G010320 vs. NCBI nr
Match: TYK09552.1 (uncharacterized protein E5676_scaffold757G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 6.1e-04
Identity = 42/107 (39.25%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 59  RNTELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTE------------- 118
           R T    +   S KEK Q VTL S RN +IR+P+SE RNPTS   TE             
Sbjct: 105 RQTMAFCKLGASRKEKGQVVTLRSGRNLTIRKPDSECRNPTSASTTEIDSSSKNSQASNF 164

Query: 119 --------AQNKNMSSEEVDHSRWEEQHEDASDKAKSFIPFSPPLFP 145
                    QN N  ++EV+ +R EE   +AS++  S  P SPP FP
Sbjct: 165 SLINDASSLQNNNEPNKEVESTRREEPRGEASNQMMSSNPLSPPPFP 211

[Close]

BLAST of CsaV3_4G010320 vs. NCBI nr
Match: KAA0047821.1 (uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 7.9e-04
Identity = 49/153 (32.03%), Postives = 69/153 (45.10%), Query Frame = 0


Query: 5   EIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDH--------------HNP-- 64
           EII TL G  + K    DR + +   V+   I +DNI+ DH              H P  
Sbjct: 39  EIIPTLVGEGRAKKIKDDRVVRVIIVVKHLAIDKDNIKTDHTIQHLNNNKLSALLHPPPH 98

Query: 65  ---------------FAERQKGTLLRNTELLNQRRGSGKEKCQAVTLHSERNFSIREPES 123
                          F  +  G+L  NT++ +Q  GS KEKCQAVTL SER F I +P  
Sbjct: 99  LWKLFFAKLRQLADDFIGKPSGSLPSNTKIPDQVGGSRKEKCQAVTLRSERIF-IYDPNP 158

[Close]

BLAST of CsaV3_4G010320 vs. ExPASy TrEMBL
Match: A0A0A0KZJ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131160 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60
           MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN
Sbjct: 1   MRDREIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDHHNPFAERQKGTLLRN 60

Query: 61  TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120
           TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR
Sbjct: 61  TELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTEAQNKNMSSEEVDHSR 120

Query: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180
           WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL
Sbjct: 121 WEEQHEDASDKAKSFIPFSPPLFPEVNVIVGEKSVEEGEEFETREFPPPPLLKCKPKETL 180

Query: 181 ILNVEERTDLEP 193
           ILNVEERTDLEP
Sbjct: 181 ILNVEERTDLEP 192

[Close]

BLAST of CsaV3_4G010320 vs. ExPASy TrEMBL
Match: A0A5A7TGS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00540 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11
Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 50  AERQKGTLLRNTELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTE---- 109
           + R KG+L  NTE  NQ  GSGKEKCQ VTL S RN +IREP+ ERRN TST  T+    
Sbjct: 53  SRRPKGSLPSNTETPNQVGGSGKEKCQVVTLRSRRNLTIREPKFERRNSTSTSTTKIGSA 112

Query: 110 -----------------AQNKNMSSEEVDHSRWEEQHEDASDKAKSFIPFSPPLF 144
                             QNKN+ ++EV+ +R EEQ ++ S +  S  P S P F
Sbjct: 113 SNDSNPLNSSLTNNTSSLQNKNIPNKEVESTRREEQRDEESHETTSSNPLSSPPF 167

[Close]

BLAST of CsaV3_4G010320 vs. ExPASy TrEMBL
Match: A0A5D3CE56 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00350 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-04
Identity = 42/107 (39.25%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 59  RNTELLNQRRGSGKEKCQAVTLHSERNFSIREPESERRNPTSTYGTE------------- 118
           R T    +   S KEK Q VTL S RN +IR+P+SE RNPTS   TE             
Sbjct: 105 RQTMAFCKLGASRKEKGQVVTLRSGRNLTIRKPDSECRNPTSASTTEIDSSSKNSQASNF 164

Query: 119 --------AQNKNMSSEEVDHSRWEEQHEDASDKAKSFIPFSPPLFP 145
                    QN N  ++EV+ +R EE   +AS++  S  P SPP FP
Sbjct: 165 SLINDASSLQNNNEPNKEVESTRREEPRGEASNQMMSSNPLSPPPFP 211

[Close]

BLAST of CsaV3_4G010320 vs. ExPASy TrEMBL
Match: A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.8e-04
Identity = 49/153 (32.03%), Postives = 69/153 (45.10%), Query Frame = 0


Query: 5   EIISTLAGVDKIKIRNSDRAIDLTTEVRCPGIGQDNIRNDH--------------HNP-- 64
           EII TL G  + K    DR + +   V+   I +DNI+ DH              H P  
Sbjct: 39  EIIPTLVGEGRAKKIKDDRVVRVIIVVKHLAIDKDNIKTDHTIQHLNNNKLSALLHPPPH 98

Query: 65  ---------------FAERQKGTLLRNTELLNQRRGSGKEKCQAVTLHSERNFSIREPES 123
                          F  +  G+L  NT++ +Q  GS KEKCQAVTL SER F I +P  
Sbjct: 99  LWKLFFAKLRQLADDFIGKPSGSLPSNTKIPDQVGGSRKEKCQAVTLRSERIF-IYDPNP 158

The following BLAST results are available for this feature:

BLAST of CsaV3_4G010320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53802.1	3.3e-103	100.00	hypothetical protein Csa_014694 [Cucumis sativus]	[more]
KAA0041246.1	1.5e-10	44.35	uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK...	[more]
TYK09552.1	6.1e-04	39.25	uncharacterized protein E5676_scaffold757G00350 [Cucumis melo var. makuwa]	[more]
KAA0047821.1	7.9e-04	32.03	uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_4G010320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G010320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZJ6	1.6e-103	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131160 PE=4 SV=1	[more]
A0A5A7TGS2	7.2e-11	44.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CE56	2.9e-04	39.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U2P4	3.8e-04	32.03	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of CsaV3_4G010320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G010320.1	CsaV3_4G010320.1	mRNA