CsaV3_4G010230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G010230
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionGag/pol protein
Locationchr4: 8017974 .. 8022850 (-)
RNA-Seq ExpressionCsaV3_4G010230
SyntenyCsaV3_4G010230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAACTTATAAATTATTTTTTTTTCTAGATAGTTCACTAAATTAGTAAAGTCTTCTCTATGCATGAGGGAAGAATGTGGGATGTTGGCTAGATCCGTGGTGATAGACTAATAGGTGAAAAGTTGAATTTTGGATACCCACGTAGTTATTTTGTTCTACTCTCAAATTTGATCTATTCAAGCTTGTAAATTATAACATACTCCACCAATTGCACTATTATGCAAATTTATTAAAATTGGTTATCTTGCAATCACCATCTAAATGAAAACAAAGTATAAAAAAAAAGAAAAAAACTGACCCGACCGAATCCGACCCAGCCCAATTACACCCCTAGTGATAACTAACACTTCTTCTTCCCAATGTTGTCATAAACCTCTATTTGAAATTACTGCAAGGTAAAGAAAAAATAATCTTACTGCACAAATCCTTCATCTTCCTGCAGCGTCCTTGATCTCAGAAAAAACAGTACCGGACATTCCTTTATTATGTGTATAGCTGGAATCATCACTATTGCTCGTTGTCACGTAACTGCTCACCCCCAACTCCGAGTCGCGTCTCCGATCACCAGTACTACTAAACAATGTTTCATCCAAGCACCACCGTTCTTCGCTGCTGTCCCTCTTGCCGCTCCCCACCTCATCTTCGTCTACCTTCTTCTTTGATGCCTCTTGTAATTGCAATGCAAACTCCAATCCCCACACCACGTCTTTCATTGGTGGCCGCTTTACGCCATCGTCTTCAACACAACTCACAGCTATCTCTATGAACTTTCTCAAGCATTCCGGCGATATCTCATTTTTTACGTTCTTGTCAATGGTTTGAGCCACTGTGTTCTTACGGTGGCACTGTCGTACCCACTCGGCTAGGTACACCTCCTTCTTCTCCGCGGAGCGTACCAGTGGTGGACGAGCACAAAGTACTTCACAAAGAACTACCCCGAACGAATATACATCAGACTTTTCAGTTAGTTGTTGTCGTCTATAGTACTCTGGGTCTAAGTATCCGAAACTACCTTTGACAACTGTGCTAATGTGAGTGTTGTTGGACATGTTTGCCGGCCCGACTTTCGATAATCCAAAATCCGAAACTTTTGCAATCCATTTCTCATCAAGTAAAATGTTAGTTGTTTTGACGTCACGGTGGATGATTGTGTGATTGGCTCCTGTGTGAAGGTAGTGTAACCCTTTCGCGGCCCCAACGCAAATTTGGAGGCGTTGATTCCATGTGAGAGGCTGTTCGTCATTCCCATATAGATGACTACGGAGAGTTCCATGAGACATGTATTCATAGACAAGAATCATTTCATTCCCATCATTACAATACCCAATTAAGGAGACGAGATGGAGATGGCGAAGTTGCGAGAGCATCTCGATCTCTGTCTTGAACTCATGTGCGCCCTGTTTTGAACCTGGTTTCAACCGCTTAATCGCCACTTGAGTGGCTCCATCGTCAATGTAACCTTTGTACACGTTACCAAATCCGCCAACGCCAATGATGAAAACATCATCGAAGTTCTTGGTAGCGGCTTTAATCTCCCCCAATGAGAAGTAACGACATAAATCAGAAGGCAGATTGGAGTTGCGAGTCTTACTTGTTTTGTTTGTTGATGTCGAAAACGGAGCCCACCATGAAGTTCCATCACTGGAGGCTTGGTCTGTTAATGTTCTTCGTCGCCGAAAGAAAAGCAGACCCAGAGCTAATATTGCCACCACAACTCCAATGACAACAGGAATTACAATTGCCACAATTTTAGTATTTGATGAATCATTATTCATTTGAGGGGTGGATGGTGGAAGAGACTGAGTGGGAGGTGGATCTGGATTTTGACCACCAAGATTACCATTCGTATCATTTAATTTGAAGATTTCAACACCATTCAAGATCACATTACTGAATCTCGTCAAGTCGTCATTTGGATTTGGTCGAAGCTTTACAGAGAGATTCACTTTCTTCTGATTGCTCTTAGTAACAAAAACACCATAGTCTTCATAAATAGGATTATATTTTCCTCTAGCCTTTTGAAATACATCGAAACTTTCCTCGGCCGTAGCGTCTTTAATATAAATCAAGAACACTCTATCACCAGCAGCAGTGATCTCAGCCTGAAACTCGCAGAAATGAAGACGAATCATGTAATAGAATCCAGGATCTACAGGGTACTCCCATGTAAGGTTGTAGTTTTTATTAAGCGTGGAATTCGGACCCATGGTTCGAGCCGTGCGATACACATTTTCTGGCGCCGTGTACGGCTGTCTTTCAATATAGTTGAGTTGTATAGATAAGTTCGCTGGTCGAGCATCAGCTACGTAATCATTCATGTAATTACTTTCCTCTGCCCAAGTTCGAAACATTCCAGTGTCTTCACCAGAGGAGATGGTGTTTCCACCAATATTCATTCTATATACCATCTCAAGGGACGTATTGTTACCAACTTGGATGAACTGATTATTCTGATCAACAAGCTTCAACCTCGGAGTATAATAAAGATCCAACGGCATGGATACAATTTCAATTCCGTTGATGAAAGCATAAGAGTCTTGATTTGTGGGAGAGAATGTAATGTTAAGCATTTGATCGTTTTCGTCTGTATAAACACAGAACTCGCGAGTAATCGTCGGGGAATTAAGATCAGAAGCGTCGGCATTGACAGAAGCATTGAAGTTAGAGAGAAGAGTGTGCATAGAAGTTGTTTTGACGGAGAAAACAGCTTTGTAACGGTCGAAGTTCAAGTAAAAAGCAGAATAGAAGTAAAGGCGAATGAATTTGGGGCCAGGACTCACCGGAAAAGAGTAGGTGAAATTGGAGTGTGAGAGGCGTGCTGTTGAGTAAGGGACAACGTTGGGGGAAGAGGATTGCGTGTCGGCTTGTGAAGTTACGGACGCGCGGTTCTGATGGAAATCGGAAGGGAAGAATTTGGATTGGACGTCGCCGGTCCAGGGGCGGTTGTCTCCAGATGCAGATAAGGTTTCAGATGTACCGCAATTAAGGAGAATATCGTCGATGGGTTTGTAGGAGGCGGGTGAGTCGCCGGAGACAGAGAGGGAAAGGAAATAGAGGTGGAAGAAAGCGAATAGGAAGGTTGTTGTAGTTGAACGGTGGTTGGCCATTAGAGAAGATAGAGATTGTTTATGAAATTGAAGAATGGGGGTTTTAGAGATGGAAGAATAAACATAAGATTTTTCTGTGTTCCGATGCGTAAGAGTGAGGAAGAGGGTGGCGGCGAAGAAGTCTACGGTGGTTGAAAAGTCTTGGTCGTTTCCTATCTCTCTTTCTTTCTACTAAAAAAATCATTACAAACACAAATTGGTTATAAGATTATTGGATACCTTTCTCTTCACCAACAATCTCACTATCTTCTTTTCCAATAATTCATAAAAGAAACAAAGAAAATCACTCTCTTGCTTACATTTGATAGACAATTTGGTAATTAACATATTATCTTACTTCTCATTTATTCATTTTATATACTACTTTCCACCTTTCCATTTTATTTTATTAAATTTATAATGTATATTCATTTTTATGTTAACATAAAATATTATATTGATTTTAGGGGACATTGTTGGTCACCATCCGATGTAAGGTATGCTCAACCACTTTCTGCTAATCTTATAAGCATAAGTCAGGTCTACCATCAGGGTATACTATAAATTTCTATGAAGAAAATTGCATAGTGATTGATGTAAGTAATGCTGCAGTTATGAGGGGTATATGTCAACCTGATAACCGCTATCATTGGAGCTCAAATAAAACTGAGTCTTGCAACTGCTGAATAATGAGTTTTCTATTTTATTTTCACAGGGGAGTTTGTTGGCTTTTTTTTCTTTTTTTTTGCTGGGATGATTATTTAAGACTTGTTTATTTAAAAGAAGACTTATAATGTATTTGTTGAAGATTGCTCTTATGTGTTATTCAAGATCATTATTTTATGAAGCATTGATTTTTTAAGTTTCAAGAAGAAAGCTTATTCAAGATTATCAAATTAGGGGCAATATGTTTTGTCTACTGTGGTGTTCCCTATTTTTTTTATGCTTTCTTGCTTCTGTGGGGGTATATTGTGACTTCTGGAATCTTTTATCTACATCTTTTTATAAAGAAGATCCTCAAGACTATGAGTGGCTCTACAATTAATTGATGAGTAAGACCCATATTTATCACTTGGCTAATTTGTTTTTAACTAACAAGAAAAGTGGGAAGTTAGTCTTATTTGCAATCCTAAGTTGTTCGTTCATCTTTTTCTTCTTGTGTTTCGGCTAGAAAGATTGTTTTCATTTCATTCAAGCTTGAACAATGGTGAATACTCGTCGTGCAAAGTATCAAGATCCTTCAGTTGTTGTAGAAGATTCTAATATCATAATTAACTTGCATGGAGTTCAAATGTGAGGAAGCCGTTTCAAGAGCGTTTCTGCTCATCATTCATACAGTCGACCATCTATTCGTAGATGCTCTTAAACCAAATCTAAGGACTCGGTTGCTCGGCTATAGGCTATTCCAGAGCTCCCATGTTCCTGATATTAAACATAATGTACGGCCTTTTAGGGAAGCTCGAATATTTGATTCAGAAAATGTCAATATATCTTCTGAAGGAATTTGTATTCCTAGTGGTGTTGCCTTACGAATTATCAACACTTTAACTGCAGAATTCAATGCTCTGTGAACCTCCACCAATGTGTTGATTGATCAATGTGTACCTCCCTCAGAGTGAATTCTTTTTGTGTTTAAAGGGGGAGATTTTTGTGTTGATAGATTGTTGGAAGTTGACATTTGTATGATGGAAGTTGTTCTAGTGGGTACTTATTATCATTTCTATGGTGTTTCTATTGATGTTGTGGTTTTGATGAAACATAAAAAGATTCTTTCTCTTTATGACAAAAAG

mRNA sequence

ATGGAGTTCAAATGTGAGGAAGCCGTTTCAAGAGCGTTTCTGCTCATCATTCATACAGTCGACCATCTATTCGTAGATGCTCTTAAACCAAATCTAAGGACTCGGTTGCTCGGCTATAGGCTATTCCAGAGCTCCCATGTTCCTGATATTAAACATAATGTACGGCCTTTTAGGGAAGCTCGAATATTTGATTCAGAAAATGTCAATATATCTTCTGAAGGAATTTGTATTCCTAGTGGTGTTGCCTTACGAATTATCAACACTTTAACTGCAGAATTCAATGCTCTGTGA

Coding sequence (CDS)

ATGGAGTTCAAATGTGAGGAAGCCGTTTCAAGAGCGTTTCTGCTCATCATTCATACAGTCGACCATCTATTCGTAGATGCTCTTAAACCAAATCTAAGGACTCGGTTGCTCGGCTATAGGCTATTCCAGAGCTCCCATGTTCCTGATATTAAACATAATGTACGGCCTTTTAGGGAAGCTCGAATATTTGATTCAGAAAATGTCAATATATCTTCTGAAGGAATTTGTATTCCTAGTGGTGTTGCCTTACGAATTATCAACACTTTAACTGCAGAATTCAATGCTCTGTGA

Protein sequence

MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREARIFDSENVNISSEGICIPSGVALRIINTLTAEFNAL*
Homology
BLAST of CsaV3_4G010230 vs. NCBI nr
Match: KGN53793.1 (hypothetical protein Csa_015153 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 2.5e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREA 60
          MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREA
Sbjct: 1  MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREA 60

Query: 61 RIFDSENVNISSEGICIPSGVALRIINTLTAEFNAL 97
          RIFDSENVNISSEGICIPSGVALRIINTLTAEFNAL
Sbjct: 61 RIFDSENVNISSEGICIPSGVALRIINTLTAEFNAL 96

BLAST of CsaV3_4G010230 vs. NCBI nr
Match: KAE8651849.1 (hypothetical protein Csa_006761 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-14
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 12  AFLLIIHTVDHLFVDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREARIFDSENVNIS 71
           + LL +++  H   DAL  N +T  L YRLFQ SHVP+IKH ++P REAR+FDSE+VN+S
Sbjct: 228 SLLLHLNSEIHNSQDALGSNPKTLSLSYRLFQGSHVPNIKHTIQPSREARMFDSEDVNLS 287

Query: 72  SEGICIPSGVALRIINT 89
           SEGI IP GVA +IIN+
Sbjct: 288 SEGIHIPHGVASQIINS 304

BLAST of CsaV3_4G010230 vs. NCBI nr
Match: KAA0033904.1 (uncharacterized protein E6C27_scaffold43059G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 5.2e-12
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 14  LLIIHTVDHLFV-DALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREARIFDSENVNISS 73
           LLI    D L + DA  P+ +T +L Y+LFQ SHVPDI+H++R  R +R+FD E+VN S 
Sbjct: 17  LLIDLNFDILILNDAPSPDPKTLVLSYKLFQRSHVPDIEHDMRSSRNSRVFDFEDVNFSL 76

Query: 74  EGICIPSGVALRIINTLTAEFNAL 97
           EG  +P  +  R+INTLTAE  AL
Sbjct: 77  EGFNLPRELGSRVINTLTAESRAL 100

BLAST of CsaV3_4G010230 vs. NCBI nr
Match: TYK19780.1 (uncharacterized protein E5676_scaffold307G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 6.8e-12
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 0

Query: 5   CEEAVSRAFLLIIHTVDHLF--VDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREARI 64
           C +    A LL+IH    +   VDAL P+ +T  L YRLFQ SHV +I+H++RP R   +
Sbjct: 258 CNDETVDAGLLLIHLNVEILTPVDALGPDPKTLSLNYRLFQGSHVSNIEHDMRPLRNPHM 317

Query: 65  FDSENVNISSEGICIPSGVALRIINTLTAEFNAL 97
           FD+E+V+ + EG  +  G+A RIIN LT E +AL
Sbjct: 318 FDTEDVDENDEGFFVHRGLASRIINILTPESHAL 351

BLAST of CsaV3_4G010230 vs. NCBI nr
Match: TYK28643.1 (uncharacterized protein E5676_scaffold2030G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 24  FVDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREARIFDSENVNISSEGICIPSGVAL 83
           + DAL+P  +T  L YRLFQ SHVPDI H+V P R  RIFD+ N + S+EG  +   +A 
Sbjct: 308 YTDALRPEPKTIALSYRLFQGSHVPDIDHDVHPTRGPRIFDTTNWDDSAEGFYVDRELAT 367

Query: 84  RIINTLTAEFNAL 97
            IIN+LTAE +AL
Sbjct: 368 HIINSLTAESHAL 380

BLAST of CsaV3_4G010230 vs. ExPASy TrEMBL
Match: A0A0A0KW57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129590 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREA 60
          MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREA
Sbjct: 1  MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREA 60

Query: 61 RIFDSENVNISSEGICIPSGVALRIINTLTAEFNAL 97
          RIFDSENVNISSEGICIPSGVALRIINTLTAEFNAL
Sbjct: 61 RIFDSENVNISSEGICIPSGVALRIINTLTAEFNAL 96

BLAST of CsaV3_4G010230 vs. ExPASy TrEMBL
Match: A0A5A7SRT0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00950 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 14  LLIIHTVDHLFV-DALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREARIFDSENVNISS 73
           LLI    D L + DA  P+ +T +L Y+LFQ SHVPDI+H++R  R +R+FD E+VN S 
Sbjct: 17  LLIDLNFDILILNDAPSPDPKTLVLSYKLFQRSHVPDIEHDMRSSRNSRVFDFEDVNFSL 76

Query: 74  EGICIPSGVALRIINTLTAEFNAL 97
           EG  +P  +  R+INTLTAE  AL
Sbjct: 77  EGFNLPRELGSRVINTLTAESRAL 100

BLAST of CsaV3_4G010230 vs. ExPASy TrEMBL
Match: A0A5D3D8I7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00040 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 0

Query: 5   CEEAVSRAFLLIIHTVDHLF--VDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREARI 64
           C +    A LL+IH    +   VDAL P+ +T  L YRLFQ SHV +I+H++RP R   +
Sbjct: 258 CNDETVDAGLLLIHLNVEILTPVDALGPDPKTLSLNYRLFQGSHVSNIEHDMRPLRNPHM 317

Query: 65  FDSENVNISSEGICIPSGVALRIINTLTAEFNAL 97
           FD+E+V+ + EG  +  G+A RIIN LT E +AL
Sbjct: 318 FDTEDVDENDEGFFVHRGLASRIINILTPESHAL 351

BLAST of CsaV3_4G010230 vs. ExPASy TrEMBL
Match: A0A5D3DY34 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00740 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.6e-12
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 24  FVDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREARIFDSENVNISSEGICIPSGVAL 83
           + DAL+P  +T  L YRLFQ SHVPDI H+V P R  RIFD+ N + S+EG  +   +A 
Sbjct: 308 YTDALRPEPKTIALSYRLFQGSHVPDIDHDVHPTRGPRIFDTTNWDDSAEGFYVDRELAT 367

Query: 84  RIINTLTAEFNAL 97
            IIN+LTAE +AL
Sbjct: 368 HIINSLTAESHAL 380

BLAST of CsaV3_4G010230 vs. ExPASy TrEMBL
Match: A0A5A7VA48 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00090 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.6e-12
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 24  FVDALKPNLRTRLLGYRLFQSSHVPDIKHNVRPFREARIFDSENVNISSEGICIPSGVAL 83
           + DAL+P  +T  L YRLFQ SHVPDI H+V P R  RIFD+ N + S+EG  +   +A 
Sbjct: 297 YTDALRPEPKTIALSYRLFQGSHVPDIDHDVHPTRGPRIFDTTNWDDSAEGFYVDRELAT 356

Query: 84  RIINTLTAEFNAL 97
            IIN+LTAE +AL
Sbjct: 357 HIINSLTAESHAL 369

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53793.12.5e-46100.00hypothetical protein Csa_015153 [Cucumis sativus][more]
KAE8651849.12.5e-1458.44hypothetical protein Csa_006761 [Cucumis sativus][more]
KAA0033904.15.2e-1251.19uncharacterized protein E6C27_scaffold43059G00950 [Cucumis melo var. makuwa][more]
TYK19780.16.8e-1245.74uncharacterized protein E5676_scaffold307G00040 [Cucumis melo var. makuwa][more]
TYK28643.12.0e-1153.42uncharacterized protein E5676_scaffold2030G00740 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KW571.2e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129590 PE=4 SV=1[more]
A0A5A7SRT02.5e-1251.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D8I73.3e-1245.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DY349.6e-1253.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VA489.6e-1253.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G010230.1CsaV3_4G010230.1mRNA