CsaV3_4G010120 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G010120
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 7919230 .. 7920997 (-)
RNA-Seq Expression	CsaV3_4G010120
Synteny	CsaV3_4G010120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATACCACAGCTGAGCCAATAGGCCTTTGTGATAAAATATCAAAAAGTTTATAAATTTGAATATATATAAAATGATAGTTTAATTTTAATGGATTTGGATGATGAGTGAAGATTATCAAATCCGATGGAGAGCATAACAGGGAGCGAACTTGCCGGTTTCGCAGTGGGCGCTTTGCTCGTTTGCGCCACCATTTCTGCCCCAAGAATCGACGCTTTCATCTCTTCTTCTCAGCGCAGGTTTTTCTCTACTCTTTTCATTTTCTGGCTTCTTCATTTCACCTAAATTTTGACGGGTTCTGTATGATTATCTGATGGAGTAACCCAATTTGAAAATAACCCATGACTTCTATTCATTTATGTTTTTGTTTCCTTCAGTCTGTCTGTTGGCCACTGGTTTAGGGATTGTTTACGCATTTTTTTTTTTAATAAGAAACCTTATTTGGTTTCCACTTTATGATTTATGCTTTTTGGATGCATCCAGTACTTAAACATTACATTTTTGCATCTATCAGTGACATTTCATTGGGACTGCTGTTGTTCATATCTGAAAATTGCATTTTCTAATGGATACATTGTTTTTCCTTTAGATGTTTTCTCCTTTAATTCAACCTCAACCTTCTACATGATTCATCCATCCCTTCCCTTGGAGAAATTATACATGAGGGGCTAGAACAAATCTGACGTGTGATTGTACATTGATGTATATGAATGAGAATTTAAAAACTGTATTTTAAACTTCAATCGAATGTTGAAAACACATTAAACGATTATTAGAGGGTGGGCTATTCATTAACATAATTATAGTTCAACGATAGTTGACATATATACTCCTTTCCTCCTTTCCTTGTGGCCGTACCCCACATTTGTTGTAGTTAAGATAACACTCCTTTGTATTCAGTTTAAGCATAAACTTCGTAAAAGGTTTGATTACCATTTTAGTCTAGGATTTTGGTTCCATGTCATTTTGACCTTTTTACTTTCATATGTCCAAATTTGATCAATATACCTTCAATAACTCTTAAATTTTGACCTATTCAAGAATAGAAATTGTGTGAATATGGTTACAAAGTTGGAAAGGTAATTAGAGCCTAATGTTTCTTTTTCTTAATAGGGATTGTTTTAAAGATTCATTGGAAGTGCATGGAAATTTCCATTGGACACTTGAAACTACAATGACTATAATAAAACAATGGATGTAGTTGATTATGATGAATGTAATTAAGTATTTTCTCTGCCTGAACAGATCCTTGGGCATGTGCAAAAGGTGTGGTGACCTGAGGATGATAGCATGTTCAAAATGTAAAGGAGTTGGATCAACCAAATCAGGTGGACTGTTTGGCATTAACATTCTTGCTGACTTTTACGAAGCATTGGGCAAAGACGAATCAAATGTGCCTTCTATCCCGTGTACGAGATGCAACGCCAAGGGTCGCTTCCGATGTCCAGATTGCTGCTCTCAACTCACACAAACTTGATTTTTGTTCCTTGATCATTTCATTCTAATGCTCCTCAGATGGAATGAAGATGTACCAATTATTGTTCTTCTATTAAAGCATTACTCATTAATTTCTCCTCTCTTCCACAAAAGCAGATGTGGTGATGAAGATTTCTACTTGAAACAGATTTTTGAACTTTTTCCATATTTGGGTTTGTGAAAAGGACCTGTATTTACTAAAGAGAAGCCAAGCTAAAAGAATTTAAATAACAATGTTCTTCCCATCGATACTCTGTAAAGGTTGGCATAAATTAAGAATACGATATGGGGAA

mRNA sequence

ATGGAGAGCATAACAGGGAGCGAACTTGCCGGTTTCGCAGTGGGCGCTTTGCTCGTTTGCGCCACCATTTCTGCCCCAAGAATCGACGCTTTCATCTCTTCTTCTCAGCGCAGATCCTTGGGCATGTGCAAAAGGTGTGGTGACCTGAGGATGATAGCATGTTCAAAATGTAAAGGAGTTGGATCAACCAAATCAGGTGGACTGTTTGGCATTAACATTCTTGCTGACTTTTACGAAGCATTGGGCAAAGACGAATCAAATGTGCCTTCTATCCCGTGTACGAGATGCAACGCCAAGGGTCGCTTCCGATGTCCAGATTGCTGCTCTCAACTCACACAAACTTGA

Coding sequence (CDS)

ATGGAGAGCATAACAGGGAGCGAACTTGCCGGTTTCGCAGTGGGCGCTTTGCTCGTTTGCGCCACCATTTCTGCCCCAAGAATCGACGCTTTCATCTCTTCTTCTCAGCGCAGATCCTTGGGCATGTGCAAAAGGTGTGGTGACCTGAGGATGATAGCATGTTCAAAATGTAAAGGAGTTGGATCAACCAAATCAGGTGGACTGTTTGGCATTAACATTCTTGCTGACTTTTACGAAGCATTGGGCAAAGACGAATCAAATGTGCCTTCTATCCCGTGTACGAGATGCAACGCCAAGGGTCGCTTCCGATGTCCAGATTGCTGCTCTCAACTCACACAAACTTGA

Protein sequence

MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGVGSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLTQT*

Homology

[Close]

BLAST of CsaV3_4G010120 vs. NCBI nr
Match: XP_004137138.1 (uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical protein Csa_015216 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 3.3e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLTQT 115
           GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLTQT
Sbjct: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLTQT 114

[Close]

BLAST of CsaV3_4G010120 vs. NCBI nr
Match: XP_038901067.1 (uncharacterized protein LOC120088085 [Benincasa hispida])

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MESITGSELAGFAVGALLVCA+ISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 1   MESITGSELAGFAVGALLVCASISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLT 113
           GS KSGGLFG+NILA+FYE+ GKDESN PSIPCTRCNAKGRF+CPDCCSQ+T
Sbjct: 61  GSIKSGGLFGVNILAEFYESFGKDESNAPSIPCTRCNAKGRFQCPDCCSQMT 112

[Close]

BLAST of CsaV3_4G010120 vs. NCBI nr
Match: KAA0045498.1 (uncharacterized protein E6C27_scaffold1202G00430 [Cucumis melo var. makuwa] >TYJ96211.1 uncharacterized protein E5676_scaffold261G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 4.7e-52
Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 20  MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 79

Query: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLTQT 115
           GSTKSGGLFGINILADFYE+L   ESNVPSIPC RCNAKGRF+CPDC SQLTQT
Sbjct: 80  GSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNAKGRFQCPDCSSQLTQT 131

[Close]

BLAST of CsaV3_4G010120 vs. NCBI nr
Match: XP_008464577.2 (PREDICTED: uncharacterized protein LOC103502417 [Cucumis melo])

HSP 1 Score: 214.5 bits (545), Expect = 4.7e-52
Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLTQT 115
           GSTKSGGLFGINILADFYE+L   ESNVPSIPC RCNAKGRF+CPDC SQLTQT
Sbjct: 61  GSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNAKGRFQCPDCSSQLTQT 112

[Close]

BLAST of CsaV3_4G010120 vs. NCBI nr
Match: XP_022155031.1 (uncharacterized protein LOC111022174 [Momordica charantia])

HSP 1 Score: 208.4 bits (529), Expect = 3.3e-50
Identity = 96/110 (87.27%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           ME++T SE+AGFAVGALLVCATISAPRIDAFISSSQR SLGMCKRCGDLRMIACSKC+GV
Sbjct: 1   MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRSSLGMCKRCGDLRMIACSKCRGV 60

Query: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQ 111
           GSTK+GGLFG+NILADFYE+ G+DESN+PSIPC+RCNAKGRF CPDCCSQ
Sbjct: 61  GSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNAKGRFSCPDCCSQ 110

[Close]

BLAST of CsaV3_4G010120 vs. ExPASy TrEMBL
Match: A0A0A0KZH5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.6e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLTQT 115
           GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLTQT
Sbjct: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLTQT 114

[Close]

BLAST of CsaV3_4G010120 vs. ExPASy TrEMBL
Match: A0A5A7TRM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00510 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.3e-52
Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 20  MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 79

Query: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLTQT 115
           GSTKSGGLFGINILADFYE+L   ESNVPSIPC RCNAKGRF+CPDC SQLTQT
Sbjct: 80  GSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNAKGRFQCPDCSSQLTQT 131

[Close]

BLAST of CsaV3_4G010120 vs. ExPASy TrEMBL
Match: A0A1S3CMA9 (uncharacterized protein LOC103502417 OS=Cucumis melo OX=3656 GN=LOC103502417 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.3e-52
Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLTQT 115
           GSTKSGGLFGINILADFYE+L   ESNVPSIPC RCNAKGRF+CPDC SQLTQT
Sbjct: 61  GSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNAKGRFQCPDCSSQLTQT 112

[Close]

BLAST of CsaV3_4G010120 vs. ExPASy TrEMBL
Match: A0A6J1DQH1 (uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022174 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 96/110 (87.27%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           ME++T SE+AGFAVGALLVCATISAPRIDAFISSSQR SLGMCKRCGDLRMIACSKC+GV
Sbjct: 1   MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRSSLGMCKRCGDLRMIACSKCRGV 60

Query: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQ 111
           GSTK+GGLFG+NILADFYE+ G+DESN+PSIPC+RCNAKGRF CPDCCSQ
Sbjct: 61  GSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNAKGRFSCPDCCSQ 110

[Close]

BLAST of CsaV3_4G010120 vs. ExPASy TrEMBL
Match: A0A6J1J083 (uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 94/111 (84.68%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           ME++T SELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 10  MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 69

Query: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQL 112
           GSTKSGG+F     A+ YE+ GKDE N PSIPCTRCNAKGRF CPDCCSQ+
Sbjct: 70  GSTKSGGVF-----AELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQM 115

[Close]

BLAST of CsaV3_4G010120 vs. TAIR 10
Match: AT5G15802.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-29
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           M+S+T +E+AG AVGALL+ ATI+AP++DAFI++SQRRSLGMC++CGDL+ +AC +CKG 
Sbjct: 1   MQSLTSNEVAGLAVGALLLGATIAAPKVDAFIAASQRRSLGMCRKCGDLKNVACGRCKGT 60

Query: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDC 108
           G+ KSGG FG +           D SN  S+ C  C AKG F CP+C
Sbjct: 61  GTIKSGGFFGFS-----------DSSNTRSVACDNCQAKGCFPCPEC 96

The following BLAST results are available for this feature:

BLAST of CsaV3_4G010120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137138.1	3.3e-58	100.00	uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical ...	[more]
XP_038901067.1	2.5e-53	91.96	uncharacterized protein LOC120088085 [Benincasa hispida]	[more]
KAA0045498.1	4.7e-52	93.86	uncharacterized protein E6C27_scaffold1202G00430 [Cucumis melo var. makuwa] >TYJ...	[more]
XP_008464577.2	4.7e-52	93.86	PREDICTED: uncharacterized protein LOC103502417 [Cucumis melo]	[more]
XP_022155031.1	3.3e-50	87.27	uncharacterized protein LOC111022174 [Momordica charantia]	[more]

BLAST of CsaV3_4G010120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G010120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZH5	1.6e-58	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1	[more]
A0A5A7TRM8	2.3e-52	93.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CMA9	2.3e-52	93.86	uncharacterized protein LOC103502417 OS=Cucumis melo OX=3656 GN=LOC103502417 PE=...	[more]
A0A6J1DQH1	1.6e-50	87.27	uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1J083	1.9e-46	84.68	uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031...	[more]

BLAST of CsaV3_4G010120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15802.1	1.2e-29	55.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37760	CHAPERONE	coord: 1..110
None	No IPR available	PANTHER	PTHR37760:SF1	CHAPERONE	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G010120.1	CsaV3_4G010120.1	mRNA