CsaV3_4G009830 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G009830
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	PHB domain-containing protein
Location	chr4: 7592682 .. 7592843 (-)
RNA-Seq Expression	CsaV3_4G009830
Synteny	CsaV3_4G009830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGAACATCGCAGAGGCACACAAGGATTGTGTAGCACCTGTCCAATATCAGTTCAAAACGAAATTTCAATCGGCAAGGGAAATTCCAGGCGGCAAATGCGACGTCCGAGCGACAAGAGGAAGTCGAAAGGGGAAGCACAAAAAGGTTTGCACGAGGCGTTAA

mRNA sequence

CCGAACATCGCAGAGGCACACAAGGATTGTGTAGCACCTGTCCAATATCAGTTCAAAACGAAATTTCAATCGGCAAGGGAAATTCCAGGCGGCAAATGCGACGTCCGAGCGACAAGAGGAAGTCGAAAGGGGAAGCACAAAAAGGTTTGCACGAGGCGTTAA

Coding sequence (CDS)

CCGAACATCGCAGAGGCACACAAGGATTGTGTAGCACCTGTCCAATATCAGTTCAAAACGAAATTTCAATCGGCAAGGGAAATTCCAGGCGGCAAATGCGACGTCCGAGCGACAAGAGGAAGTCGAAAGGGGAAGCACAAAAAGGTTTGCACGAGGCGTTAA

Protein sequence

PNIAEAHKDCVAPVQYQFKTKFQSAREIPGGKCDVRATRGSRKGKHKKVCTRR*

Homology

[Close]

BLAST of CsaV3_4G009830 vs. NCBI nr
Match: KAE8649317.1 (hypothetical protein Csa_015183, partial [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 3.1e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  PNIAEAHKDCVAPVQYQFKTKFQSAREIPGGKCDVRATRGSRKGKHKKVCTRR 54
          PNIAEAHKDCVAPVQYQFKTKFQSAREIPGGKCDVRATRGSRKGKHKKVCTRR
Sbjct: 1  PNIAEAHKDCVAPVQYQFKTKFQSAREIPGGKCDVRATRGSRKGKHKKVCTRR 53

[Close]

BLAST of CsaV3_4G009830 vs. ExPASy TrEMBL
Match: A0A0A0KZE0 (PHB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G121790 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 49/53 (92.45%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  PNIAEAHKDCVAPVQYQFKTKFQSAREIPGGKCDVRATRGSRKGKHKKVCTRR 54
          PNIAEAHKDCVAPVQYQFKTKFQSAREIPGGKCDVRATRGSRKGKHKK    R
Sbjct: 18 PNIAEAHKDCVAPVQYQFKTKFQSAREIPGGKCDVRATRGSRKGKHKKASAAR 70

The following BLAST results are available for this feature:

BLAST of CsaV3_4G009830 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649317.1	3.1e-22	100.00	hypothetical protein Csa_015183, partial [Cucumis sativus]	[more]

BLAST of CsaV3_4G009830 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G009830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZE0	1.2e-19	92.45	PHB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G121790 PE=4 SV...	[more]

BLAST of CsaV3_4G009830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G009830.1	CsaV3_4G009830.1	mRNA