CsaV3_4G009800 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G009800
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 7564884 .. 7565976 (-)
RNA-Seq Expression	CsaV3_4G009800
Synteny	CsaV3_4G009800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGAAATGTGTGGTTGTGAATCCAAAAGCAACAAATTGTCCTAAAAATTAGGTGGTTGGTTCCAATATAAAACTATGCCTTCCACCCTTCCGCATCCCTTGTCCTGATCATTCTCAAACGCATCGATATCTTAAGCCCCCCTTTTGAGTTTGTGTGTGCATTTGTTTTAATCTCCCACCTCCACCAGGCTCGCATTAGTCCCAACCAACTTTATTTTTCCACAATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAAGCGAGGTTTCCGCTACACCCACAAACAAGCCCCAGACCCAGGCAACTGAGATCGTTACTCAGGTAAAATTAATTTAATTAAAATGTACTTTCATGAGATCATTGATTATTAGTGTGTCTAGCTTCAAATATATTTTATACTTTACATAATTAATTACGTTACATTATAATAATATGTTTTTCTTTAGGGAAATAATGATGGAGGTAAGAGTGCATCAACAACATTGGTGGACCTGTCCAAATCCAACGAAACAAAACAGGACAAAGCTGGTGGAGATGTTGAGCTTGAGCCTGCCTCTGGAGTTCCTAATTATGATAAATCAACTGCTCTCAACCTTACCCAAGCGGAGAAAGTCGAAGGCATTGCCAAAGAATCAGAGGACAAGAGTGAGGCTATTGTCAAGAACACTCAGACCAAGGAGGGCCACCCTAGGATGACGATTGGTGCGGATGCCGCCAAATTAGATGCCACTCCAACTCCAACCTCTGAACCCAAAAACATGGCACCCCTTGATGTAGCGATCTAACCTAACCATACTTTTTATTTGTTTTCTATATACCTATATTCAACTCATCCATATATTCATATTAACTCCACTTATCCTTCTATTCAAATTTCACGAAACCAACCAACAATTCTTGATTATGTATATTATTCACCATCTTCTACTTAATCCACTTTAATTATGCTAATTATGCATAACAAACATGTATTTATTCTTCTCATTACTCTCTGGTCTCCGCCTTTTACATTTTGCTAAGAAAGAGGACCTCACACTCCATACCTCTAGATACAACGATACCGAAAATAAATTTCTCTCATAA

mRNA sequence

ATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAAGCGAGGTTTCCGCTACACCCACAAACAAGCCCCAGACCCAGGCAACTGAGATCGTTACTCAGGGAAATAATGATGGAGGTAAGAGTGCATCAACAACATTGGTGGACCTGTCCAAATCCAACGAAACAAAACAGGACAAAGCTGGTGGAGATGTTGAGCTTGAGCCTGCCTCTGGAGTTCCTAATTATGATAAATCAACTGCTCTCAACCTTACCCAAGCGGAGAAAGTCGAAGGCATTGCCAAAGAATCAGAGGACAAGAGTGAGGCTATTGTCAAGAACACTCAGACCAAGGAGGGCCACCCTAGGATGACGATTGGTGCGGATGCCGCCAAATTAGATGCCACTCCAACTCCAACCTCTGAACCCAAAAACATGGCACCCCTTGATGTAGCGATCTAA

Coding sequence (CDS)

ATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAAGCGAGGTTTCCGCTACACCCACAAACAAGCCCCAGACCCAGGCAACTGAGATCGTTACTCAGGGAAATAATGATGGAGGTAAGAGTGCATCAACAACATTGGTGGACCTGTCCAAATCCAACGAAACAAAACAGGACAAAGCTGGTGGAGATGTTGAGCTTGAGCCTGCCTCTGGAGTTCCTAATTATGATAAATCAACTGCTCTCAACCTTACCCAAGCGGAGAAAGTCGAAGGCATTGCCAAAGAATCAGAGGACAAGAGTGAGGCTATTGTCAAGAACACTCAGACCAAGGAGGGCCACCCTAGGATGACGATTGGTGCGGATGCCGCCAAATTAGATGCCACTCCAACTCCAACCTCTGAACCCAAAAACATGGCACCCCTTGATGTAGCGATCTAA

Protein sequence

MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQDKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMTIGADAAKLDATPTPTSEPKNMAPLDVAI*

Homology

[Close]

BLAST of CsaV3_4G009800 vs. NCBI nr
Match: XP_011653400.1 (uncharacterized protein LOC105435210 [Cucumis sativus] >KGN53750.1 hypothetical protein Csa_014628 [Cucumis sativus])

HSP 1 Score: 285.4 bits (729), Expect = 2.8e-73
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ 60
           MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ
Sbjct: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ 60

Query: 61  DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT 120
           DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT
Sbjct: 61  DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT 120

Query: 121 IGADAAKLDATPTPTSEPKNMAPLDVAI 149
           IGADAAKLDATPTPTSEPKNMAPLDVAI
Sbjct: 121 IGADAAKLDATPTPTSEPKNMAPLDVAI 148

[Close]

BLAST of CsaV3_4G009800 vs. NCBI nr
Match: TYK04607.1 (uncharacterized protein E5676_scaffold351G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.7e-54
Identity = 119/152 (78.29%), Postives = 130/152 (85.53%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQ----ATEIVTQGNNDGGKSASTTLVDLSKSN 60
           MGGCASKPKGMDLHP+EV  TPTN+PQ Q    ATE +TQGNNDGG++ASTTLVDLSKS 
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPTNEPQPQSQPKATETITQGNNDGGENASTTLVDLSKSF 60

Query: 61  ETKQDKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGH 120
           E KQD+A GDV+L+ A GVPNYDKST  NLT  EKVEGIAKE+EDK+EAIV+NTQTKEGH
Sbjct: 61  EPKQDEAVGDVKLKSAPGVPNYDKSTTPNLTHDEKVEGIAKETEDKNEAIVQNTQTKEGH 120

Query: 121 PRMTIGADAAKLDATPTPTSEPKNMAPLDVAI 149
           PR T GADAAK DATPTPTSE K MAPLDVAI
Sbjct: 121 PRTTFGADAAKSDATPTPTSEHKTMAPLDVAI 152

[Close]

BLAST of CsaV3_4G009800 vs. NCBI nr
Match: KAA0056646.1 (uncharacterized protein E6C27_scaffold288G001770 [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 1.2e-52
Identity = 117/152 (76.97%), Postives = 128/152 (84.21%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQ----ATEIVTQGNNDGGKSASTTLVDLSKSN 60
           MGGCASKPKGMDLHP+EV  TPTN+PQ Q    ATE +TQGNNDGG++ASTTLVDLSKS 
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPTNEPQPQSQPKATETITQGNNDGGENASTTLVDLSKSF 60

Query: 61  ETKQDKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGH 120
           E KQD+A GDV+L+ A  V NYDKST  NLT  EKVEGIAKE+EDK+EAIV+NTQTKEGH
Sbjct: 61  EPKQDEAVGDVKLKSAPRVSNYDKSTTPNLTHDEKVEGIAKETEDKNEAIVQNTQTKEGH 120

Query: 121 PRMTIGADAAKLDATPTPTSEPKNMAPLDVAI 149
           PR T GADAAK DATPTPTSE K MAPLDVAI
Sbjct: 121 PRTTFGADAAKSDATPTPTSEHKTMAPLDVAI 152

[Close]

BLAST of CsaV3_4G009800 vs. NCBI nr
Match: XP_038875809.1 (uncharacterized protein LOC120068172 [Benincasa hispida])

HSP 1 Score: 204.9 bits (520), Expect = 4.8e-49
Identity = 112/148 (75.68%), Postives = 120/148 (81.08%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ 60
           MGGCASKPKGMDLHP+EV ATPT+KPQ QA E ++QGNNDGG+SASTTLVDLS+SNE KQ
Sbjct: 1   MGGCASKPKGMDLHPNEVPATPTDKPQPQAAETISQGNNDGGESASTTLVDLSESNEPKQ 60

Query: 61  DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT 120
           D+AGGDVE EPA GVPNY KST   LT  EKVE IAKESED       N QTKEGHPR T
Sbjct: 61  DEAGGDVEPEPAPGVPNYHKSTTPELTHVEKVEAIAKESED-------NIQTKEGHPR-T 120

Query: 121 IGADAAKLDATPTPTSEPKNMAPLDVAI 149
             ADAAK DATPTPTSE K MAP+DVAI
Sbjct: 121 TSADAAKSDATPTPTSEHKTMAPVDVAI 140

[Close]

BLAST of CsaV3_4G009800 vs. ExPASy TrEMBL
Match: A0A0A0KVU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G120780 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ 60
           MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ
Sbjct: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ 60

Query: 61  DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT 120
           DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT
Sbjct: 61  DKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGHPRMT 120

Query: 121 IGADAAKLDATPTPTSEPKNMAPLDVAI 149
           IGADAAKLDATPTPTSEPKNMAPLDVAI
Sbjct: 121 IGADAAKLDATPTPTSEPKNMAPLDVAI 148

[Close]

BLAST of CsaV3_4G009800 vs. ExPASy TrEMBL
Match: A0A5D3BYJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00110 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.2e-55
Identity = 119/152 (78.29%), Postives = 130/152 (85.53%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQ----ATEIVTQGNNDGGKSASTTLVDLSKSN 60
           MGGCASKPKGMDLHP+EV  TPTN+PQ Q    ATE +TQGNNDGG++ASTTLVDLSKS 
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPTNEPQPQSQPKATETITQGNNDGGENASTTLVDLSKSF 60

Query: 61  ETKQDKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGH 120
           E KQD+A GDV+L+ A GVPNYDKST  NLT  EKVEGIAKE+EDK+EAIV+NTQTKEGH
Sbjct: 61  EPKQDEAVGDVKLKSAPGVPNYDKSTTPNLTHDEKVEGIAKETEDKNEAIVQNTQTKEGH 120

Query: 121 PRMTIGADAAKLDATPTPTSEPKNMAPLDVAI 149
           PR T GADAAK DATPTPTSE K MAPLDVAI
Sbjct: 121 PRTTFGADAAKSDATPTPTSEHKTMAPLDVAI 152

[Close]

BLAST of CsaV3_4G009800 vs. ExPASy TrEMBL
Match: A0A5A7UQQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001770 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.9e-53
Identity = 117/152 (76.97%), Postives = 128/152 (84.21%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQ----ATEIVTQGNNDGGKSASTTLVDLSKSN 60
           MGGCASKPKGMDLHP+EV  TPTN+PQ Q    ATE +TQGNNDGG++ASTTLVDLSKS 
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPTNEPQPQSQPKATETITQGNNDGGENASTTLVDLSKSF 60

Query: 61  ETKQDKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIVKNTQTKEGH 120
           E KQD+A GDV+L+ A  V NYDKST  NLT  EKVEGIAKE+EDK+EAIV+NTQTKEGH
Sbjct: 61  EPKQDEAVGDVKLKSAPRVSNYDKSTTPNLTHDEKVEGIAKETEDKNEAIVQNTQTKEGH 120

Query: 121 PRMTIGADAAKLDATPTPTSEPKNMAPLDVAI 149
           PR T GADAAK DATPTPTSE K MAPLDVAI
Sbjct: 121 PRTTFGADAAKSDATPTPTSEHKTMAPLDVAI 152

The following BLAST results are available for this feature:

BLAST of CsaV3_4G009800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653400.1	2.8e-73	100.00	uncharacterized protein LOC105435210 [Cucumis sativus] >KGN53750.1 hypothetical ...	[more]
TYK04607.1	1.7e-54	78.29	uncharacterized protein E5676_scaffold351G00110 [Cucumis melo var. makuwa]	[more]
KAA0056646.1	1.2e-52	76.97	uncharacterized protein E6C27_scaffold288G001770 [Cucumis melo var. makuwa]	[more]
XP_038875809.1	4.8e-49	75.68	uncharacterized protein LOC120068172 [Benincasa hispida]	[more]

BLAST of CsaV3_4G009800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G009800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVU8	1.3e-73	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G120780 PE=4 SV=1	[more]
A0A5D3BYJ6	8.2e-55	78.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UQQ8	5.9e-53	76.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CsaV3_4G009800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G009800.1	CsaV3_4G009800.1	mRNA