CsaV3_4G009740 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G009740
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description30S ribosomal protein S17, chloroplastic
Locationchr4: 7504412 .. 7508489 (+)
RNA-Seq ExpressionCsaV3_4G009740
SyntenyCsaV3_4G009740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGTTGCTTAACTGCATCATTCAAATTTGCTTTTGATCTAAATTTCTTTGCCATGGTCGGAAGCTTTGATCGGCTGGAACAGGGTAGTTTTGTTTAGATGAGTATCATCCTTACTGGTTCTTTCAAGCTATGGCCAACCTGGTGACCTTTTTGGTTCTTACTTTTGCATACTAAGCTTTTCTTTTCATCAAATGTTTTTTCTAAACTTTAACTGGCGATGGAAGATTATCAGGACTTTGTTTTTGGTTGGCCATTTGACCATTGGTGTGTGGCAGGCAAGAAAAACTGGTTGGCTGAGCAACAATGCTTACACATATTTTTAGAGCATTTTTTTTACATTTAGTATGCTTATGTACCTATAGTATAGGGATATATATATGAGAATTTGAGCAAAGTTGTTTTAAATAATAAATTTTGAACAATTTTTTTTCTTTAATTTTTCCGAAAGTTCCTCTCTTTGTGCTTAAACCTATTTCACGTTAAACCCCCGCCCTCCCATTACATGCTACTCCCCCCTGCCGCACGAATTTCCTATCCAGATAGTTTCTGAATGTTTGAATTTATAGCAGCTTCAAGTTTAGAAGGGTTTAGGGTTTTCAATCGCTGGACCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGATGAGAACAATCAATGCAATATTGGTGATAGGGTGAGAATTTAATTCCATCTTTACTTCCCCAATTAATTTGTTTTTCTTTATTTCAATTCACTTGATCAAGTTGTGGACTCGATGTATAGTTTCAGTTAAAACATCGTGCAAATTTGTTCGACATCACGGTAGTACTGGATGAAATGGATAGCATATAGCATGTTGTGGTGGTCGTTCTTTATGTTTGAAGAGTTTATTTGTTAAATTACATATGCATTATGTTAATTTATATAATTCTTGTTTCATTTTCATTTCTCTTGAACATGTGCTTGGGGTTTGTTAGTATTTAACGTTTCTTGTTAATTCACTGTTGAAACAAATTGAATTTTATAACCTCAGGTTAAATTAGATCCTTCGAGGCCATTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCAAGAATTTACGAGCCACCATCACAAGATAAACAGTCTGTTTCAGACAAAAGCAATGTTTCAGCTCCTTCAACCACTTAAGGTTTGATTGATACACTTGTTATTTTCTTTTTAGAAAGCCAAACTTGTATCTTATTGAGTTCTGGATCGTCCTGGGCGATCATAATCACTTGAATCTCTGATGACTATTTGCGGCAATTCTTTGTTTCCATTTAGAGTATATTGCAGTTGCACGTGATTGTTATTTATTAGAAACTTTACTAGAATACATCTTTTTATTGTTATGTGAACAATATGTATTACCATCTTTCTTGATGGCATTGTAGGTTCATGAGCAGTTCTTTTTTTTTTTTCTCGATATAATCAAACAGCTTTCACTGAGATAAAAATGAAAGAATACAAGGACATACAAAAAAACCAGCCCACCAAGCCACCTAAGTAAAATACTGTCTATGGAGTAGTTACAAAAGTTCTTCGAAATCGTAACCAAAAAAGACATGAAATCTAATAAAGGACCAAATTTCACTAAGATCCCCCTCTCTCTCTTGGAACACCCCATCATTCCTCTTGCCCCAAATGTCCCAAATAACCGCGTACACGCTGACAAGTCATAAAAAACCCCCTTTATCTCTGAAAGGCGGATGGAGGAGGAACTCCTCGATCGTCGCTTTGATGGTACGTAAACCAGCAAAGCTAACGCTGAACTCCAGAAGGAAGGAGCTCCACACGGCCCTCGCAAACTGGCAATCCCAAGAAAGATGATCAAGATCTTTCTCCGCCTTTTGACACAACATGCAGCAAAAAGGTGCGACAAGGGAAGATCTTCTCCTAACAAGCCTATCAACAGTATTAACCAATAGACACATATAATGTCTTTGTGGGCAACTAAGATGCCCTTCCCATTTGAATCTCTTTGTTTGAAATTTGATGATAACGTTGTCTTATTTTTGCTGTATGTTAATGACTTGGTGCTTGTAGTGAACCATGAAACACATCTTGCCTTTTGAAAATGCAGTTCAGAAAGTTTTGCTAGCTTAGAGCCTAGTATTTTCTTTGCTTTATTTTTCCTATTAGGAGTTTATTTCATTTTCCTTTAAATGTTTCTTCTATCTTTTTGTTATGAGGAGTTTGCATCTTACCCAAAAAAGGGACATAACGATAGTAGTTCATGGGGGTTCTTTCATAATGATTGATTTTATGTTCATTCTGCCCTCCAATTGTTTGCAAACGCATTGCATTCATTCACCCCCTTTTATCTATATAATTCAGTGTTTTGATGAGCTAGTTGGCTGTCTTTAAATACTCATGGGTGATTGTTCAAGATTTTTATTTGAAGTTTGATTAATAGGATACTTGGTCTCCAGAAAGTCCTATCTTGTTCCTAGCGATTGTGGTTGGATTGAGATTAAAAACATGTTTTCACGTATCATTTTAGAATTACTAACCTTAAAAACCAGCATGGATTGGCTAATGGCCAACAAGGGTGAAAGTATATACCTAAGATTCGAAATCATACAAGTGTTTGCTCGGCAACCGAATGCAGTATGGTCAAATGGTTCTAAGAGGAAACCTTCAACATCACCGAGGATTCTTTGGAGGTTTTAAGGGTGTGATCGTATCAGTGCTGGGTCTTGTGAAAAAAATCAAAGTTAAAAAAGAAAATATAGTGGTTCTCTTACAGTGAAAATAGGGTTTTCAAGGGTGCTGGTCCAATAACAATGTCCTTGGTTCCTAAGAGAGCTACATGGTTATTATGGAGCCATTTCAGTGGATTTTTGTTGACAGAAGCTCCATATTGTTCATTGAGTTCAATACGCTATGGGAACCTTTCATTTTCATTTACAATGCAGAGAAGAAAGTTTCTCTGTTGTCCAAAGTTCCCTGAAAAAATAAGAAATGGAAAATGGTTGATTCATGAAGTCAAATCAATAGACTTCTCAACTTTTGACCGTGTTTCTTTGAGGGGAAGATGCAAGCATCTGTAGCACCTTGATTTCTTGGAAGTTGGAGGGTGCAAAGCAAACATTTTCTCAAAGGAGGCTTTTAAGGTACTGTTGAAGATTTTTTCAAATCATGGGACATCTACTCAACATATAAATAGTGACCAATTTTGCCTCTAATTAGTCTCCCTTTTGTACATAGTGGTGTGATTAAATGGGAAAAAAGGGCCTTTAATAAGACGGTATTGCCCATCAACTACCTCCAGGTAAAAGGTTCAATTAGCTCCATCTTTCAAGCCCATTTGGTCTCTATCTGGACTGGAGAAGGTTTTGTACCCTTTCAACTGCAAGATCATGTGGATGATTCCTAATGCCTGTCTGTGTAGAAATAGCCATCAATTAGTTGAGGCATTATAATCTTAACCAACGGGTGTAGCCTGATAAGTTCGAATTCCACCTATATATTATTGAATATTTTCTTTTTTCTTTGTTTTAGTACGAAAGGGGTGGAGGTACGTGGGTTGGAACTTACCTTGAGAGGAGTGCATATTTAATTATGTGGTTTGCTTTAGTGATTTTCATGCTAGCTACCCTTTTGGGAGTTTGGTGGGAGAATCTTCAAAGATGAGTGATCGGGATTTAGGTGAAATGAATAAGGAAGAAAATCTTTAAAGATGAGTGATTGATGGATGGTTTTATATTTCATTATTGTTTGTCTCTTCTTGTGCCTCGCCAGTTTTTTCAGTAACTGTTTTTTTTATGGTTCAACCTAATGGGTCATGCATGTATATAATTTTTGTCAACTCAGATAAGTTGACGCCCTCTCCCTTCTATTAATTTCTTTCATCAATGTAAAAAACTGCAAATCTGTCTCGCATTTATGTAAAAACATTTTCAATAATATATCTGTTTGCCTAACCATTTAACAGAAAACTACTGCAAACCACTAC

mRNA sequence

ATGGGTTGTTGCTTAACTGCATCATTCAAATTTGCTTTTGATCTAAATTTCTTTGCCATGGTCGGAAGCTTTGATCGGCTGGAACAGGCAGCTTCAAGTTTAGAAGGGTTTAGGGTTTTCAATCGCTGGACCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGATGAGAACAATCAATGCAATATTGGTGATAGGGTTAAATTAGATCCTTCGAGGCCATTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCAAGAATTTACGAGCCACCATCACAAGATAAACAGTCTGTTTCAGACAAAAGCAATGTTTCAGCTCCTTCAACCACTTAA

Coding sequence (CDS)

ATGGGTTGTTGCTTAACTGCATCATTCAAATTTGCTTTTGATCTAAATTTCTTTGCCATGGTCGGAAGCTTTGATCGGCTGGAACAGGCAGCTTCAAGTTTAGAAGGGTTTAGGGTTTTCAATCGCTGGACCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGATGAGAACAATCAATGCAATATTGGTGATAGGGTTAAATTAGATCCTTCGAGGCCATTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCAAGAATTTACGAGCCACCATCACAAGATAAACAGTCTGTTTCAGACAAAAGCAATGTTTCAGCTCCTTCAACCACTTAA

Protein sequence

MGCCLTASFKFAFDLNFFAMVGSFDRLEQAASSLEGFRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT*
Homology
[Close]
BLAST of CsaV3_4G009740 vs. NCBI nr
Match: KAE8649314.1 (hypothetical protein Csa_015070 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 7.1e-77
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 1   MGCCLTASFKFAFDLNFFAMVGSFDRLEQAASSLEGFRVFNRWTKMKQVVGMVVSNKMQK 60
           MGCCLTASFKFAFDLNFFAMVGSFDRLEQAASSLEGFRVFNRWTKMKQVVGMVVSNKMQK
Sbjct: 1   MGCCLTASFKFAFDLNFFAMVGSFDRLEQAASSLEGFRVFNRWTKMKQVVGMVVSNKMQK 60

Query: 61  SVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEIL 120
           SVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEIL
Sbjct: 61  SVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEIL 120

Query: 121 RKARIYEPPSQDKQSVSDKSNVSAPSTT 149
           RKARIYEPPSQDKQSVSDKSNVSAPSTT
Sbjct: 121 RKARIYEPPSQDKQSVSDKSNVSAPSTT 148

[Close]
BLAST of CsaV3_4G009740 vs. NCBI nr
Match: KAA0041013.1 (30S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 6.7e-51
Identity = 107/122 (87.70%), Postives = 112/122 (91.80%), Query Frame = 0 

Query: 27  LEQAASSLEGFRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM 86
           ++++ S  E   VFNR  KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM
Sbjct: 32  IDRSRSGGEDGLVFNRLPKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM 91

Query: 87  AHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPS 146
           AHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q+VSDKSNVSAPS
Sbjct: 92  AHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPS 151

Query: 147 TT 149
           TT
Sbjct: 152 TT 153

[Close]
BLAST of CsaV3_4G009740 vs. NCBI nr
Match: TYK20371.1 (30S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 6.7e-51
Identity = 107/122 (87.70%), Postives = 112/122 (91.80%), Query Frame = 0 

Query: 27  LEQAASSLEGFRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM 86
           ++++ S  E   VFNR  KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM
Sbjct: 32  IDRSRSGGEDGLVFNRLPKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM 91

Query: 87  AHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPS 146
           AHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q+VSDKSNVSAPS
Sbjct: 92  AHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPS 151

Query: 147 TT 149
           TT
Sbjct: 152 TT 153

[Close]
BLAST of CsaV3_4G009740 vs. NCBI nr
Match: XP_004137152.1 (uncharacterized protein LOC101211400 [Cucumis sativus] >XP_011653397.1 uncharacterized protein LOC101211400 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.6e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 46  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 105
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 106 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 149
           RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT
Sbjct: 61  RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 103

[Close]
BLAST of CsaV3_4G009740 vs. NCBI nr
Match: XP_016903240.1 (PREDICTED: 30S ribosomal protein S17-like [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 46  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 105
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 106 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 149
           RPLSK KHWVVAEILRKARIYEPPSQD Q+VSDKSNVSAPSTT
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 103

[Close]
BLAST of CsaV3_4G009740 vs. ExPASy Swiss-Prot
Match: B1I1J7 (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-21
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0 

Query: 51  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK 110
           G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+
Sbjct: 11  GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKIAETRPLSR 70

Query: 111 HKHWVVAEILRKARI 126
           HK W VAE+L +++I
Sbjct: 71  HKRWRVAEVLERSQI 85

[Close]
BLAST of CsaV3_4G009740 vs. ExPASy Swiss-Prot
Match: A7HM43 (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.9e-20
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 0 

Query: 47  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 106
           K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SR
Sbjct: 4   KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVVEIEESR 63

Query: 107 PLSKHKHWVVAEILRKARIYEPP 130
           PLSK K WVV  IL ++++ E P
Sbjct: 64  PLSKLKRWVVVNILERSKLSETP 86

[Close]
BLAST of CsaV3_4G009740 vs. ExPASy Swiss-Prot
Match: Q8R7W3 (30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.2e-19
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 0 

Query: 50  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLS 109
           +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLS
Sbjct: 10  IGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIMETRPLS 69

Query: 110 KHKHWVVAEILRKA 124
           K K W + E+++KA
Sbjct: 70  KEKRWRLVEVIKKA 83

[Close]
BLAST of CsaV3_4G009740 vs. ExPASy Swiss-Prot
Match: Q6LVA7 (30S ribosomal protein S17 OS=Photobacterium profundum (strain SS9) OX=298386 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.2e-19
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 0 

Query: 50  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLS 109
           +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GD V++   RPLS
Sbjct: 9   LGRVISSKMDKSIVVAIERMVKHPMYGKYIKRTTKLHAHDENNECNLGDTVEVRECRPLS 68

Query: 110 KHKHWVVAEILRKARI 126
           K K W +  I+ KAR+
Sbjct: 69  KTKSWTLVRIVEKARV 84

[Close]
BLAST of CsaV3_4G009740 vs. ExPASy Swiss-Prot
Match: Q1LTC9 (30S ribosomal protein S17 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata OX=374463 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 0 

Query: 51  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK 110
           G VVSNKM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN CNIGD +++   RP+SK
Sbjct: 15  GRVVSNKMDKSIVVAIERIIKHPIYGKYIKRTTKIHAHDENNACNIGDLIEIKECRPISK 74

Query: 111 HKHWVVAEILRKA 124
            K W++  I+ KA
Sbjct: 75  TKSWILIRIIEKA 87

[Close]
BLAST of CsaV3_4G009740 vs. ExPASy TrEMBL
Match: A0A5D3D9X1 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00680 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.2e-51
Identity = 107/122 (87.70%), Postives = 112/122 (91.80%), Query Frame = 0 

Query: 27  LEQAASSLEGFRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM 86
           ++++ S  E   VFNR  KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM
Sbjct: 32  IDRSRSGGEDGLVFNRLPKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM 91

Query: 87  AHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPS 146
           AHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q+VSDKSNVSAPS
Sbjct: 92  AHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPS 151

Query: 147 TT 149
           TT
Sbjct: 152 TT 153

[Close]
BLAST of CsaV3_4G009740 vs. ExPASy TrEMBL
Match: A0A5A7TD01 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G002330 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.2e-51
Identity = 107/122 (87.70%), Postives = 112/122 (91.80%), Query Frame = 0 

Query: 27  LEQAASSLEGFRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM 86
           ++++ S  E   VFNR  KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM
Sbjct: 32  IDRSRSGGEDGLVFNRLPKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFM 91

Query: 87  AHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPS 146
           AHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q+VSDKSNVSAPS
Sbjct: 92  AHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPS 151

Query: 147 TT 149
           TT
Sbjct: 152 TT 153

[Close]
BLAST of CsaV3_4G009740 vs. ExPASy TrEMBL
Match: A0A1S4E5I9 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992092 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.7e-48
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 46  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 105
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 106 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 149
           RPLSK KHWVVAEILRKARIYEPPSQD Q+VSDKSNVSAPSTT
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 103

[Close]
BLAST of CsaV3_4G009740 vs. ExPASy TrEMBL
Match: A0A6J1JP01 (30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486195 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.3e-46
Identity = 97/103 (94.17%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 46  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 105
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 106 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 149
           RPLSKHK WVVAEILRKARIYEPPSQ+ Q VSDK  VSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAPSTT 103

[Close]
BLAST of CsaV3_4G009740 vs. ExPASy TrEMBL
Match: A0A6J1FRT9 (30S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447872 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.2e-45
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 46  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 105
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 106 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 149
           RPLSKHK WVVAEILRKARIY+PPSQ+ Q VSDK  VSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 103

[Close]
BLAST of CsaV3_4G009740 vs. TAIR 10
Match: AT1G49400.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-36
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 46  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 105
           MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPS
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 106 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 149
           RPLSK+KHW+VAEI++KARIY P +    +VS  ++ S+ STT
Sbjct: 61  RPLSKNKHWIVAEIIKKARIYSPKAA-AAAVSASASASSASTT 102

[Close]
BLAST of CsaV3_4G009740 vs. TAIR 10
Match: AT3G18880.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 144.4 bits (363), Expect = 7.2e-35
Identity = 67/83 (80.72%), Postives = 76/83 (91.57%), Query Frame = 0 

Query: 46  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 105
           MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPS
Sbjct: 1   MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60

Query: 106 RPLSKHKHWVVAEILRKARIYEP 129
           RPLSKHKHW+V+EI++KARIY P
Sbjct: 61  RPLSKHKHWIVSEIIKKARIYSP 83

[Close]
BLAST of CsaV3_4G009740 vs. TAIR 10
Match: AT1G79850.1 (ribosomal protein S17 )

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-10
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 46  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 105
           MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ S
Sbjct: 50  MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109

Query: 106 RPLSKHKHWVVAEILRKA 124
           RP+SK K +V   ++ +A
Sbjct: 110 RPISKTKSFVALPVIARA 127

[Close]
BLAST of CsaV3_4G009740 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.2e-04
Identity = 27/71 (38.03%), Postives = 38/71 (53.52%), Query Frame = 0 

Query: 51  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLS 110
           G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLS
Sbjct: 74  GTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLS 133

Query: 111 KHKHWVVAEIL 121
           K   + V +++
Sbjct: 134 KTVRFNVLKVI 144

The following BLAST results are available for this feature:
BLAST of CsaV3_4G009740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649314.17.1e-77100.00hypothetical protein Csa_015070 [Cucumis sativus][more]
KAA0041013.16.7e-5187.7030S ribosomal protein S17-like [Cucumis melo var. makuwa][more]
TYK20371.16.7e-5187.7030S ribosomal protein S17-like [Cucumis melo var. makuwa][more]
XP_004137152.11.6e-49100.00uncharacterized protein LOC101211400 [Cucumis sativus] >XP_011653397.1 uncharact... [more]
XP_016903240.11.2e-4797.09PREDICTED: 30S ribosomal protein S17-like [Cucumis melo][more]
BLAST of CsaV3_4G009740 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B1I1J77.5e-2164.0030S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 ... [more]
A7HM434.9e-2055.4230S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5... [more]
Q8R7W39.2e-1958.1130S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis ... [more]
Q6LVA79.2e-1952.6330S ribosomal protein S17 OS=Photobacterium profundum (strain SS9) OX=298386 GN=... [more]
Q1LTC91.6e-1854.7930S ribosomal protein S17 OS=Baumannia cicadellinicola subsp. Homalodisca coagul... [more]
BLAST of CsaV3_4G009740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D9X13.2e-5187.7030S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TD013.2e-5187.7030S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S4E5I95.7e-4897.0930S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992092... [more]
A0A6J1JP015.3e-4694.1730S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1FRT91.2e-4593.2030S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of CsaV3_4G009740 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G49400.15.0e-3671.84Nucleic acid-binding, OB-fold-like protein [more]
AT3G18880.17.2e-3580.72Nucleic acid-binding, OB-fold-like protein [more]
AT1G79850.14.7e-1042.31ribosomal protein S17 [more]
AT4G30800.12.2e-0438.03Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 97..107
score: 49.27
coord: 107..114
score: 60.25
coord: 65..88
score: 37.58
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 51..118
e-value: 3.1E-32
score: 110.5
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 46..139
IPR01998430S ribosomal protein S17TIGRFAMTIGR03635TIGR03635coord: 47..116
e-value: 2.1E-30
score: 102.6
IPR01998430S ribosomal protein S17HAMAPMF_01345_BRibosomal_S17_Bcoord: 46..121
score: 22.104376
NoneNo IPR availableGENE3D2.40.50.140coord: 38..124
e-value: 7.4E-34
score: 117.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..148
NoneNo IPR availablePANTHERPTHR10744:SF137S RIBOSOMAL PROTEIN S17, MITOCHONDRIALcoord: 46..139
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 46..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G009740.1CsaV3_4G009740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome