CsaV3_4G008690 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G008690
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 6145178 .. 6145354 (-)
RNA-Seq Expression	CsaV3_4G008690
Synteny	CsaV3_4G008690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGTTCAGATCGAGAGGAACACAACTCGTTTGATTTGTGTTCAATGCTATTTTCCTTTTCCAACCCAAGAAATCCAAATAATTTTGGTTTGGAGTTGGAGGAACCCACCTGCACCCACAAACCCTGATGGACGAAAGCTTCTGAAGCTGGGAGCAGAATCCAGCCCCTCACAA

mRNA sequence

ATGCTCGTTCAGATCGAGAGGAACACAACTCGTTTGATTTGTGTTCAATGCTATTTTCCTTTTCCAACCCAAGAAATCCAAATAATTTTGGTTTGGAGTTGGAGGAACCCACCTGCACCCACAAACCCTGATGGACGAAAGCTTCTGAAGCTGGGAGCAGAATCCAGCCCCTCACAA

Coding sequence (CDS)

ATGCTCGTTCAGATCGAGAGGAACACAACTCGTTTGATTTGTGTTCAATGCTATTTTCCTTTTCCAACCCAAGAAATCCAAATAATTTTGGTTTGGAGTTGGAGGAACCCACCTGCACCCACAAACCCTGATGGACGAAAGCTTCTGAAGCTGGGAGCAGAATCCAGCCCCTCACAA

Protein sequence

MLVQIERNTTRLICVQCYFPFPTQEIQIILVWSWRNPPAPTNPDGRKLLKLGAESSPSQ

Homology

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BLAST of CsaV3_4G008690 vs. NCBI nr
Match: KAE8649275.1 (hypothetical protein Csa_015323, partial [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 5.0e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MLVQIERNTTRLICVQCYFPFPTQEIQIILVWSWRNPPAPTNPDGRKLLKLGAESSPSQ 60
          MLVQIERNTTRLICVQCYFPFPTQEIQIILVWSWRNPPAPTNPDGRKLLKLGAESSPSQ
Sbjct: 1  MLVQIERNTTRLICVQCYFPFPTQEIQIILVWSWRNPPAPTNPDGRKLLKLGAESSPSQ 59

The following BLAST results are available for this feature:

BLAST of CsaV3_4G008690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649275.1	5.0e-26	100.00	hypothetical protein Csa_015323, partial [Cucumis sativus]	[more]

BLAST of CsaV3_4G008690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G008690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G008690 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G008690.1	CsaV3_4G008690.1	mRNA