CsaV3_4G008610 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G008610
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 6107666 .. 6107920 (-)
RNA-Seq ExpressionCsaV3_4G008610
SyntenyCsaV3_4G008610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGTGGCCTTGTGAATGAAGAAGATAAGAAGGAGAAAAATGGAGGAAAAAGTAATTTGGAAATATAACTGTTGTAGTGTAGAAGAAAAAAAAGAAGAAGAGAAATAGGGAAAGAGAAAATAAAAATTCATATGCTTCTTTTAAAAGGGCAGATTATCCGTACAATAACCCGACTTCAGAGAAAAATCAGAAGGTGGAAGTGGAGACGACTATGACACCGTCGCTCCCTCTGCTCCGATTCAGTATTCCGG

mRNA sequence

ATGGAAGGTGGCCTTGTGAATGAAGAAGATAAGAAGGAGAAAAATGGAGGAAAAAATTATCCGTACAATAACCCGACTTCAGAGAAAAATCAGAAGGTGGAAGTGGAGACGACTATGACACCGTCGCTCCCTCTGCTCCGATTCAGTATTCCGG

Coding sequence (CDS)

ATGGAAGGTGGCCTTGTGAATGAAGAAGATAAGAAGGAGAAAAATGGAGGAAAAAATTATCCGTACAATAACCCGACTTCAGAGAAAAATCAGAAGGTGGAAGTGGAGACGACTATGACACCGTCGCTCCCTCTGCTCCGATTCAGTATTCCGG

Protein sequence

MEGGLVNEEDKKEKNGGKNYPYNNPTSEKNQKVEVETTMTPSLPLLRFSIPX
Homology
[Close]
BLAST of CsaV3_4G008610 vs. NCBI nr
Match: KAE8649271.1 (hypothetical protein Csa_015260, partial [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 8.9e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MEGGLVNEEDKKEKNGGKNYPYNNPTSEKNQKVEVETTMTPSLPLLRFSIP 52
          MEGGLVNEEDKKEKNGGKNYPYNNPTSEKNQKVEVETTMTPSLPLLRFSIP
Sbjct: 1  MEGGLVNEEDKKEKNGGKNYPYNNPTSEKNQKVEVETTMTPSLPLLRFSIP 51

The following BLAST results are available for this feature:
BLAST of CsaV3_4G008610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649271.18.9e-19100.00hypothetical protein Csa_015260, partial [Cucumis sativus][more]
BLAST of CsaV3_4G008610 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G008610 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G008610 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G008610.1CsaV3_4G008610.1mRNA